BAC Information

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BAC

Clone NameB6Ng01-137N09
Chromosome19 (Build37)
Map Location 39,923,290 - 40,077,644
singlet/doubletdoublet
Overlap geneLOC100043108, LOC100042523, Cyp2c37
Upstream geneTbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40
Downstream geneCyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N09.bB6Ng01-137N09.g
ACCDH937247DH937248
length1,1771,074
definitionDH937247|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N09, 5' end.DH937248|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,076,447 - 40,077,644)(39,923,290 - 39,924,382)
sequence
gaattcatttgcttacagtagttatacttagagataaaacattagtcaat
acattgattgtaactatgggtgcagaaagtaaacttggaaagaatgtcca
cacttgtataactaaaattcatgtcaaaggaagagattatagtcttattc
tgataacaactaaaaatcttaagacatcaatcgtgactatagtcttgaac
cttcaagttatactgcttgttgatcagaaataaaactggtttgccgttag
attagttgaacctcttcattcaatcatttctatcttatagcatttatatc
tacatcagctgttttctgggagggttaaatgaatcaatagcttgagttat
taatttgagttattttacatctttctattcaattatttatcatcatcatt
ggatttcaatgagtgtagaaattaaaaagcagctctgttaagtattatct
gtaatttattgactgctgcaatagtaacataagcagaaattaagaagaat
atgaaaaatacatagaaatattaactcagaaaacactttgaaatttcaca
tactcttacagataaatgaatagaagaattagttaatattgtaatggtag
ttaaagaaagaaaaaataaaataatgaaataaattgtttctacaaaccat
ttaaaaattcaaagacattagaaaaattatagtaagagagcattaactat
tcagtaaaagtccgagaagatatttcaataaaagtgtaagaaaataagct
acatcactgaaaagaaagtattacaccaaaaaataaacagtccaaataaa
ggaatgacaaaaacgtagggatgaattgaagaattcaggatataaactct
ttgtaattaattgttaatattttaataattctaacaatgtccagaggagt
ttttggaaaatcgagaaaagttgggacataaacatggaaatgtaagcacc
caagtttactaaaatatttggaaagaagagcaaatgtggagcaacactgc
tatgaccctgcttcctgtagagctgctatcccatccatgaatcagcataa
ggcactcatagcactatatgactctgtgatgagtacaatgtgacctagga
gcatcaaagcatagagatgcaaaacatagcttacctgggatgagtagtcc
tgattaatgtcctggtccttcagggga
gaattctatccagcagcacacttgttcagtgatatgtaaatctatccaaa
cgcaagtccagttatatcaggctctttgctcatctacttctatatggact
tatgcctgttggagaatttcgggtgtttttattttacattttaactttca
attttttaatatttattatatagttgagcctggaggagagtgatataaca
aaggcaaacgttcaaaatatggtttagtctttatctcactggtgaataat
caaaggctaactaccatttattctctagggtaatgtgttttgcatttcca
agatatacataaaagaaaatttcaagtgtataagcattaggattgctagg
aaggcatgaacacagtgaatccttaacatttgattctggcaagaaaatgt
gtcatcatgaccaaggacagtacatgggcactgggattaaagctacagat
catgcacaaattgcaagtctaccagcaattgggagccactggataagtcc
cacagatcctcatgtcactggagccttgggaatgactttctattacctgc
tgagaaaggcacgaagtagtcacttttcttaaagtttccattgtcatcta
gaaagtggccagggtcaaacacctctgggttggggaactccgtgctgtca
tgcagcactgatgacagtgatgtcattacctgtgttccctgcaaacaaca
cacaacaaagaaagcaatgtatgaatgtctcagggtgctgaacattgttc
tcctcctcccccgtagaggaagtacaaaaaatggtacttgggaggtgtta
ttcttgtcctttgtcacaggttattatttcctcctactttttgttgtgtt
tccacaatttctttaaagatttactcactctttaagatcttctggcttcc
tcatagtgttgtggatactgaggtctttttcttgtgctttaactgcacta
gagtattcaagctttctgcagtagcctagtctggtctaatagtgaatatg
ctttggctatggatttgtccttatctgcatctagcacatggattggaatg
atataaattagtgctatttcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40076447_40077644
seq2: B6Ng01-137N09.b_48_1224 (reverse)

seq1  TCCCCATGAAGTGACCAGTGACATTAAATTCAGGAACTACTTCATCCCCA  50
      ||||| ||||| |||||| ||||||||  ||||| ||||| |||||||  
seq2  TCCCC-TGAAG-GACCAG-GACATTAA--TCAGG-ACTAC-TCATCCC--  41

seq1  AGGTAAGCTTATGTTTTTGCATCTCTATGCTTTTGATGCTCCTAGGTTCA  100
      |||||||| |||| |||||||||||||||| ||||||||||||||| |||
seq2  AGGTAAGC-TATG-TTTTGCATCTCTATGC-TTTGATGCTCCTAGG-TCA  87

seq1  CAATGTGACTCCAATCCACAGAGTCATATAGTGCTATGAGTGCCTTATGC  150
      || ||| ||||  || ||||||||||||||||||||||||||||||||||
seq2  CATTGT-ACTC--AT-CACAGAGTCATATAGTGCTATGAGTGCCTTATGC  133

seq1  TGATTCATGGATGGGATAGCAGCTCTACAGGAAGCAGGGTCATAGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATGGATGGGATAGCAGCTCTACAGGAAGCAGGGTCATAGCAGTG  183

seq1  TTGCTTCCACATTTGCTCTTCTTTCCAAATATTTTAGTAAACCTTGGGTG  250
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGC-TCCACATTTGCTCTTCTTTCCAAATATTTTAGTAAA-CTTGGGTG  231

seq1  CTTACATTTCCATGTTTATGTCCCAACTTTTTCTCGATTTTTCCAAAAAC  300
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CTTACATTTCCATGTTTATGTCCCAAC-TTTTCTCGA-TTTTCCAAAAAC  279

seq1  TCCTCTGGACATTGTTAGAATTATTAAAATATTAACAATTAATTACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGACATTGTTAGAATTATTAAAATATTAACAATTAATTACAAAG  329

seq1  AGTTTATATCCTGAATTCTTCAATTCATCCCTACGTTTTTGTCATTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATATCCTGAATTCTTCAATTCATCCCTACGTTTTTGTCATTCCTT  379

seq1  TATTTGGACTGTTTATTTTTTGGTGTAATACTTTCTTTTCAGTGATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGACTGTTTATTTTTTGGTGTAATACTTTCTTTTCAGTGATGTAG  429

seq1  CTTATTTTCTTACACTTTTATTGAAATATCTTCTCGGACTTTTACTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTTACACTTTTATTGAAATATCTTCTCGGACTTTTACTGAAT  479

seq1  AGTTAATGCTCTCTTACTATAATTTTTCTAATGTCTTTGAATTTTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGCTCTCTTACTATAATTTTTCTAATGTCTTTGAATTTTTAAAT  529

seq1  GGTTTGTAGAAACAATTTATTTCATTATTTTATTTTTTCTTTCTTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGAAACAATTTATTTCATTATTTTATTTTTTCTTTCTTTAACT  579

seq1  ACCATTACAATATTAACTAATTCTTCTATTCATTTATCTGTAAGAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACAATATTAACTAATTCTTCTATTCATTTATCTGTAAGAGTATG  629

seq1  TGAAATTTCAAAGTGTTTTCTGAGTTAATATTTCTATGTATTTTTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTCAAAGTGTTTTCTGAGTTAATATTTCTATGTATTTTTCATAT  679

seq1  TCTTCTTAATTTCTGCTTATGTTACTATTGCAGCAGTCAATAAATTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAATTTCTGCTTATGTTACTATTGCAGCAGTCAATAAATTACAG  729

seq1  ATAATACTTAACAGAGCTGCTTTTTAATTTCTACACTCATTGAAATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTAACAGAGCTGCTTTTTAATTTCTACACTCATTGAAATCCAA  779

seq1  TGATGATGATAAATAATTGAATAGAAAGATGTAAAATAACTCAAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGATAAATAATTGAATAGAAAGATGTAAAATAACTCAAATTAAT  829

seq1  AACTCAAGCTATTGATTCATTTAACCCTCCCAGAAAACAGCTGATGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGCTATTGATTCATTTAACCCTCCCAGAAAACAGCTGATGTAGA  879

seq1  TATAAATGCTATAAGATAGAAATGATTGAATGAAGAGGTTCAACTAATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGCTATAAGATAGAAATGATTGAATGAAGAGGTTCAACTAATCT  929

seq1  AACGGCAAACCAGTTTTATTTCTGATCAACAAGCAGTATAACTTGAAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCAAACCAGTTTTATTTCTGATCAACAAGCAGTATAACTTGAAGGT  979

seq1  TCAAGACTATAGTCACGATTGATGTCTTAAGATTTTTAGTTGTTATCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACTATAGTCACGATTGATGTCTTAAGATTTTTAGTTGTTATCAGA  1029

seq1  ATAAGACTATAATCTCTTCCTTTGACATGAATTTTAGTTATACAAGTGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTATAATCTCTTCCTTTGACATGAATTTTAGTTATACAAGTGTG  1079

seq1  GACATTCTTTCCAAGTTTACTTTCTGCACCCATAGTTACAATCAATGTAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTTCCAAGTTTACTTTCTGCACCCATAGTTACAATCAATGTAT  1129

seq1  TGACTAATGTTTTATCTCTAAGTATAACTACTGTAAGCAAATGAATTC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATGTTTTATCTCTAAGTATAACTACTGTAAGCAAATGAATTC  1177

seq1: chr19_39923290_39924382
seq2: B6Ng01-137N09.g_69_1142

seq1  GAATTCTATCCAGCAGCACACTTGTTCAGTGATATGTAAATCTATCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAGCAGCACACTTGTTCAGTGATATGTAAATCTATCCAAA  50

seq1  CGCAAGTCCAGTTATATCAGGCTCTTTGCTCATCTACTTCTATATGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGTCCAGTTATATCAGGCTCTTTGCTCATCTACTTCTATATGGACT  100

seq1  TATGCCTGTTGGAGAATTTCGGGTGTTTTTATTTTACATTTTAACTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGTTGGAGAATTTCGGGTGTTTTTATTTTACATTTTAACTTTCA  150

seq1  ATTTTTTAATATTTATTATATAGTTGAGCCTGGAGGAGAGTGATATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATATTTATTATATAGTTGAGCCTGGAGGAGAGTGATATAACA  200

seq1  AAGGCAAACGTTCAAAATATGGTTTAGTCTTTATCTCACTGGTGAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACGTTCAAAATATGGTTTAGTCTTTATCTCACTGGTGAATAAT  250

seq1  CAAAGGCTAACTACCATTTATTCTCTAGGGTAATGTGTTTTGCATTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTAACTACCATTTATTCTCTAGGGTAATGTGTTTTGCATTTCCA  300

seq1  AGATATACATAAAAGAAAATTTCAAGTGTATAAGCATTAGGATTGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACATAAAAGAAAATTTCAAGTGTATAAGCATTAGGATTGCTAGG  350

seq1  AAGGCATGAACACAGTGAATCCTTAACATTTGATTCTGGCAAGAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGAACACAGTGAATCCTTAACATTTGATTCTGGCAAGAAAATGT  400

seq1  GTCATCATGACCAAGGACAGTACATGGGCACTGGGATTAAAGCTACAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCATGACCAAGGACAGTACATGGGCACTGGGATTAAAGCTACAGAT  450

seq1  CATGCACAAATTGCAAGTCTACCAGCAATTGGGAGCCACTGGATAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAATTGCAAGTCTACCAGCAATTGGGAGCCACTGGATAAGTCC  500

seq1  CACAGATCCTCATGTCACTGGAGCCTTGGGAATGACTTTCTATTACCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCCTCATGTCACTGGAGCCTTGGGAATGACTTTCTATTACCTGC  550

seq1  TGAGAAAGGCACGAAGTAGTCACTTTTCTTAAAGTTTCCATTGTCATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGCACGAAGTAGTCACTTTTCTTAAAGTTTCCATTGTCATCTA  600

seq1  GAAAGTGGCCAGGGTCAAACACCTCTGGGTTGGGGAACTCCGTGCTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGCCAGGGTCAAACACCTCTGGGTTGGGGAACTCCGTGCTGTCA  650

seq1  TGCAGCACTGATGACAGTGATGTCATTACCTGTGTTCCCTGCAAACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCACTGATGACAGTGATGTCATTACCTGTGTTCCCTGCAAACAACA  700

seq1  CACAACAAAGAAAGCAATGTATGAATGTCTCAGGGTGCTGAACATTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAGAAAGCAATGTATGAATGTCTCAGGGTGCTGAACATTGTTC  750

seq1  TCCTCCTCCCCCGTAGAGGAAGTACAAAAAATGGTACTTGGGAGGTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCCCCGTAGAGGAAGTACAAAAAATGGTACTTGGGAGGTGTTA  800

seq1  TTCTTGTCCTTTGTCACAGGTTATTTATTTCCTCCTACTTTTTGTTTGTG  850
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TTCTTGTCCTTTGTCACAGGTTA-TTATTTCCTCCTACTTTTTG-TTGTG  848

seq1  TTTTCCACAATTTCTTTAAAGAATTTACTCACTTCTTTAAGATCTTCTGC  900
       |||||||||||||||||||| |||||||||| |||||||||||||||| 
seq2  -TTTCCACAATTTCTTTAAAG-ATTTACTCAC-TCTTTAAGATCTTCTGG  895

seq1  CTTCCTCATAGTGTTGTGGATACTGAGGTCTTTTTCTTGTGCTTTAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATAGTGTTGTGGATACTGAGGTCTTTTTCTTGTGCTTTAACTG  945

seq1  CACTAGAGTATTCCAAGCTTTCTGCAGTAGCCTAGTTCTGGTCTAATAGT  1000
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CACTAGAGTATT-CAAGCTTTCTGCAGTAGCCTAG-TCTGGTCTAATAGT  993

seq1  GAAATAATGCTTTGGCTATTGATTTTGTTCTTATCCTGGCATCTAGGCAC  1050
      |||   ||||||||||||| || ||||| ||||||   ||||||| ||||
seq2  GAA--TATGCTTTGGCTATGGA-TTTGTCCTTATC--TGCATCTA-GCAC  1037

seq1  ATGGATTTGGAATGATTATATATTTAGGTGCTATTTTTCAGGT  1093
      ||||| ||||||||| |||| |||   ||||||  ||||||||
seq2  ATGGA-TTGGAATGA-TATAAATT--AGTGCTA--TTTCAGGT  1074