BAC Information

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BAC

Clone NameB6Ng01-138A16
Chromosome19 (Build37)
Map Location 17,505,310 - 17,720,027
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A16.bB6Ng01-138A16.g
ACCDH937404DH937405
length1,080995
definitionDH937404|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A16, 5' end.DH937405|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,505,310 - 17,506,399)(17,719,211 - 17,720,027)
sequence
gaattcaaaggcagtttgagaagaacgcattacgtctacacagacaggag
gctgggtcttaatcacatgggcacacagtgtctttctctgtgaatcacaa
agagtaacgacacatttttttttcttctttttttcttttgtatttcagat
cagcttgggagactgtacatcatcataagcacagatctttttcttgggaa
aatggctttgtagcctactgagagcagctcggcctgcttctacattctca
aggaagacaaatggcatatgcagccagaattacttgtttctatagctgga
ctctggaattacatagcaagggatagattcttccatcgacctgaaggtga
ttctttaaagctatgttaagtgaacaatcaaatggattttggagagttca
ttttaaatgatcaaaaatttgggaacttatcccatgtttatgtgactcat
ataatgtctgaagtgtttggggccacctgttgctagattcaggggtctct
ctctctctctctctctcttttttagcagccatcaaaggatgttatttcat
gatatgtgacaacgacttgaagttcagatattactgttcatatgaaaagt
gttgctggagcactgctcactcatttattttgtactgggctccatgtgtg
ctctatggtaggtctgagcaatcctgacaaaggccgttgagttcagaaag
cctgaaaaggaaactggatattggtagaaactgttttgtggtctgtgtcc
taagggcttttctctaaagaaacacactgggctgaaaaaagcactggact
ttcctattagtaaatgttatttacattcacagatgttactatagcaccta
ggataactgtcatagagtaaagtaacagacatagctttattgcatttagg
atgtaataactttcagtggcacacagttattaagaatgcatgctttaagt
gcatctattccttgaatctgatcagtgtctcaatctgagctaagtggctc
attcttttggaggtgtcagatttctatgaaaataagggatggatggcagc
atttgctggtcgtaagtatgaagtgggtaa
gaattccacacagcactgacaaaattgatattatttgatgttttcatctc
tatgtgacagttctaagtagctcttcatgttgtaagcacatgatatgggt
gtgtgcctggtacctatcaaaggatgaggcatatttgtgctattgatctg
acatcaaaaactgttccttgcccatgtttggccagagctggttggttgta
atgttcaaaagtgctgcccacacttggcatgtctattctggacctgcact
gaaagttgtcttggacaactaaagagtaaggagggaaatgtcatggaaag
gcttgaatccaggcacaatttatgggaaaaaattaacaacttgcacaaat
gaatgagatgatagatggggtaaaatacccaattttcatctctcaagacc
atgtctcaaaaacaaggagacctataaataagccatttctgatgtattca
tggttggactcagagactagtaccttagaaagtaactgtagagaatcccc
tgtggtttcaagtgaggaagaaatgccttcttagattgactgtgggatgg
caaccccattcctcagttgatgctcactttctcctggaggtgggctctac
aagttccctctccccactgtatggcatttcatctaaggtccctccctttg
agtcctaagagtcttaccttcaaggtctctggtacattttggagtgtgcc
cccaacctcctatctcctgagggttgtctgtttccattctttctgctgac
cctcagggcttctgtccttttcccccacccaataccagatcttgttcctc
tctttctcccctgctccccccgaaagagttgttttttgtggtgggcatat
gatgtttgagattggaacagctctctttccacctttacacatgttaacgg
atcaaactcagctcaccatgcctgcccagttagtgttttacccagtgaga
catcttaccaccccagaaatcccctgaagctataatctagcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17505310_17506399
seq2: B6Ng01-138A16.b_40_1119

seq1  GAATTCAAAGGCAGTTTGAGAAGAACGCATTACGTCTACACAGACAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCAGTTTGAGAAGAACGCATTACGTCTACACAGACAGGAG  50

seq1  GCTGGGTCTTAATCACATGGGCACACAGTGTCTTTCTCTGTGAATCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCTTAATCACATGGGCACACAGTGTCTTTCTCTGTGAATCACAA  100

seq1  AGAGTAACGACACATTTTTTTTTCTTCTTTTTTTCTTTTGTATTTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACGACACATTTTTTTTTCTTCTTTTTTTCTTTTGTATTTCAGAT  150

seq1  CAGCTTGGGAGACTGTACATCATCATAAGCACAGATCTTTTTCTTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGGAGACTGTACATCATCATAAGCACAGATCTTTTTCTTGGGAA  200

seq1  AATGGCTTTGTAGCCTACTGAGAGCAGCTCGGCCTGCTTCTACATTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTGTAGCCTACTGAGAGCAGCTCGGCCTGCTTCTACATTCTCA  250

seq1  AGGAAGACAAATGGCATATGCAGCCAGAATTACTTGTTTCTATAGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAATGGCATATGCAGCCAGAATTACTTGTTTCTATAGCTGGA  300

seq1  CTCTGGAATTACATAGCAAGGGATAGATTCTTCCATCGACCTGAAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATTACATAGCAAGGGATAGATTCTTCCATCGACCTGAAGGTGA  350

seq1  TTCTTTAAAGCTATGTTAAGTGAACAATCAAATGGATTTTGGAGAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAGCTATGTTAAGTGAACAATCAAATGGATTTTGGAGAGTTCA  400

seq1  TTTTAAATGATCAAAAATTTGGGAACTTATCCCATGTTTATGTGACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGATCAAAAATTTGGGAACTTATCCCATGTTTATGTGACTCAT  450

seq1  ATAATGTCTGAAGTGTTTGGGGCCACCTGTTGCTAGATTCAGGGGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCTGAAGTGTTTGGGGCCACCTGTTGCTAGATTCAGGGGTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTTTTTTAGCAGCCATCAAAGGATGTTATTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTTTTTTAGCAGCCATCAAAGGATGTTATTTCAT  550

seq1  GATATGTGACAACGACTTGAAGTTCAGATATTACTGTTCATATGAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGACAACGACTTGAAGTTCAGATATTACTGTTCATATGAAAAGT  600

seq1  GTTGCTGGAGCACTGCTCACTCATTTATTTTGTACTGGGCTCCATGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGAGCACTGCTCACTCATTTATTTTGTACTGGGCTCCATGTGTG  650

seq1  CTCTATGGTAGGTCTGAGCAATCCTGACAAAGGCCGTTGAGTTCAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGTAGGTCTGAGCAATCCTGACAAAGGCCGTTGAGTTCAGAAAG  700

seq1  CCTGAAAAGGAAACTGGATATTGGTAGAAACTGTTTTGTGGTCTGTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGGAAACTGGATATTGGTAGAAACTGTTTTGTGGTCTGTGTCC  750

seq1  TAAGGGCTTTTCTCTAAAGAAACACACTGGGCTGAAAAAAGCACTGGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTTTTCTCTAAAGAAACACACTGGGCTGAAAAAAGCACTGGACT  800

seq1  TTCCTATTAGTAAATGTTATTTACATTCACAGATGTTACTATAGCACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTAGTAAATGTTATTTACATTCACAGATGTTACTATAGCACCTA  850

seq1  GGATAACTGTCATAGAGTAAAGTAACAGACATAGCTTTATTGCATTTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTGTCATAGAGTAAAGTAACAGACATAGCTTTATTGCATTTAGG  900

seq1  ATGTAATAACTTTCAGTGGCACACAGTTATTAAGAATGCATGCTTTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAACTTTCAGTGGCACACAGTTATTAAGAATGCATGCTTTAAGT  950

seq1  GCATTCTTATTCCTTGAATCTTGATCAGTTGTCCTCAATCTTGAGCTAAG  1000
      ||||   ||||||||||||| ||||||| ||| ||||||| |||||||||
seq2  GCAT--CTATTCCTTGAATC-TGATCAG-TGT-CTCAATC-TGAGCTAAG  994

seq1  TGGCTCATCCTTTTTGGAGGTGTCAGATTTTCTATGAAAATAAGGGATGG  1050
      |||||||| | |||||||||||||||| ||||||||||||||||||||||
seq2  TGGCTCATTC-TTTTGGAGGTGTCAGA-TTTCTATGAAAATAAGGGATGG  1042

seq1  ATGGCAGCATTTGGCTGGTCGTTAGGTATGAAGTGGGTAA  1090
      |||||||||||| |||||||| || |||||||||||||||
seq2  ATGGCAGCATTT-GCTGGTCG-TAAGTATGAAGTGGGTAA  1080

seq1: chr19_17719211_17720027
seq2: B6Ng01-138A16.g_69_885 (reverse)

seq1  GGAGCAGGGGAGAAAGAGAGGAACAAGATCTGGTATTGGGTGGGGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGGAGAAAGAGAGGAACAAGATCTGGTATTGGGTGGGGGAAAA  50

seq1  GGACAGAAGCCCTGAGGGTCAGCAGAAAGAATGGAAACAGACAACCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGCCCTGAGGGTCAGCAGAAAGAATGGAAACAGACAACCCTCA  100

seq1  GGAGATAGGAGGTTGGGGGCACACTCCAAAATGTACCAGAGACCTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGGAGGTTGGGGGCACACTCCAAAATGTACCAGAGACCTTGAAG  150

seq1  GTAAGACTCTTAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTCTTAGGACTCAAAGGGAGGGACCTTAGATGAAATGCCATACA  200

seq1  GTGGGGAGAGGGAACTTGTAGAGCCCACCTCCAGGAGAAAGTGAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGAGGGAACTTGTAGAGCCCACCTCCAGGAGAAAGTGAGCATCA  250

seq1  ACTGAGGAATGGGGTTGCCATCCCACAGTCAATCTAAGAAGGCATTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAATGGGGTTGCCATCCCACAGTCAATCTAAGAAGGCATTTCTT  300

seq1  CCTCACTTGAAACCACAGGGGATTCTCTACAGTTACTTTCTAAGGTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTGAAACCACAGGGGATTCTCTACAGTTACTTTCTAAGGTACTA  350

seq1  GTCTCTGAGTCCAACCATGAATACATCAGAAATGGCTTATTTATAGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAGTCCAACCATGAATACATCAGAAATGGCTTATTTATAGGTCT  400

seq1  CCTTGTTTTTGAGACATGGTCTTGAGAGATGAAAATTGGGTATTTTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTTGAGACATGGTCTTGAGAGATGAAAATTGGGTATTTTACCC  450

seq1  CATCTATCATCTCATTCATTTGTGCAAGTTGTTAATTTTTTCCCATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCATCTCATTCATTTGTGCAAGTTGTTAATTTTTTCCCATAAAT  500

seq1  TGTGCCTGGATTCAAGCCTTTCCATGACATTTCCCTCCTTACTCTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGGATTCAAGCCTTTCCATGACATTTCCCTCCTTACTCTTTAGT  550

seq1  TGTCCAAGACAACTTTCAGTGCAGGTCCAGAATAGACATGCCAAGTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGACAACTTTCAGTGCAGGTCCAGAATAGACATGCCAAGTGTGG  600

seq1  GCAGCACTTTTGAACATTACAACCAACCAGCTCTGGCCAAACATGGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTTTTGAACATTACAACCAACCAGCTCTGGCCAAACATGGGCAA  650

seq1  GGAACAGTTTTTGATGTCAGATCAATAGCACAAATATGCCTCATCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTTTTTGATGTCAGATCAATAGCACAAATATGCCTCATCCTTTG  700

seq1  ATAGGTACCAGGCACACACCCATATCATGTGCTTACAACATGAAGAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACCAGGCACACACCCATATCATGTGCTTACAACATGAAGAGCTA  750

seq1  CTTAGAACTGTCACATAGAGATGAAAACATCAAATAATATCAATTTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACTGTCACATAGAGATGAAAACATCAAATAATATCAATTTTGTC  800

seq1  AGTGCTGTGTGGAATTC  817
      |||||||||||||||||
seq2  AGTGCTGTGTGGAATTC  817