BAC Information

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BAC

Clone NameB6Ng01-139I10
Chromosome4 (Build37)19 (Build37)
Map Location 9,755,263 - 9,755,6695,448,505 - 5,449,360
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChd7, LOC666782, LOC100039584, 4933402J24Rik, Asph
Downstream geneGdf6, 4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I10.bB6Ng01-139I10.g
ACCDH938486DH938487
length682861
definitionDH938486|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I10, 5' end.DH938487|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,755,263 - 9,755,669)(5,448,505 - 5,449,360)
sequence
gaattcttctgcaagctcgataatcatgaagctatcatttgaaatatgtc
ttgttaaagctatgctatttaacccatgcacatatgcacacacacacaca
cacacacacacacacacacacacacacacaaagctatgctattgagttat
ggttttgttttattgtttttttcccttgtttgttttaatcagagggttat
cttagatttttgtgtgtgtgtaggtgatccagatcttcaaccccaggtgg
cattcctatggaaattatccacctggtttttgaaacaggaactcttgagg
tagagttgagtccagcagctaagagagtgtactgtcctttcagaggatgt
gagttcagttcttagcacctatgctaggcagctcacactgcctgttcctc
cagctccaaggaatccaacacctctgacatcctcaggcatctgcacatac
atgggagcacacacatacacacgcgcacacacacacatacacacacacat
acacacacatacacacacacacacatacacacacacacacacacacacac
acacacacatatacacacacaggcgcgagcgcacacacacacaccacata
cacacatacacacacacacacacacacacactatacacacacatacacac
acacacgcgcgcacacacacgcacacatacac

gaattcttagcagcctgtccgaggctgtccgtgtgttgctctggttgtcc
gtgtccctttatccggtcaagtcctcatctctttgtgcgcagtatagagc
ccatgggccccaggcagtggttccgaggggttcctggagaccacgaagtg
ttgggatgtgcgcggggtcacctgcccggccacactcgcgctccacattc
tcggcacccgacgtctctcactgctggataggggcacttgagaggttgca
ggtgtccatttcctgtcgaggggccgcgagcacgtgtcgccaggggaggg
aaggagctgcgtccgtttcgccgagtcacagcgggccgagtcactgaggc
tgagtcaccctgggtgcccctcccttcctggccccaaacggcccctaagg
accgacgacctgggagcgagagatgcccctggcagtgcttctagcccaga
acgggggtcactgagatgctgggtcccccagtattgggctggggacatag
ctgtccagacttgcctaagcatgtgaggtgctttcctggactggaggggc
cccacatccttagctcacagagcttgaacccagtttttctctcccagaac
gctgagcccccacccccaccgacactcaatcccaacacatgcctcagatt
ttctgcaagaaaaggaaggaaggatgccagaccccttataggaggctttt
tactctcttcactttatttcatggacttaaaaaccccatcaattttgaac
ttttcaagtttttaagtcgacagctaggcatgcatttaatcccagcattc
aggatgcagaggcaggcagaatctctgggagtttgaaggctatttgggtc
tacaaagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_9755263_9755669
seq2: B6Ng01-139I10.b_131_727 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGCCACAATGCCAGGCGTGTGTGTGTGTGTG  50
      |||| |||||| ||||||||||      ||   |||||||||||||| ||
seq2  GTGTATGTGTGCGTGTGTGTGC------GC---GCGTGTGTGTGTGTATG  41

seq1  TGTGTGT---GTGTGTGCCACAATGCCAG-GCGTGTGTGTGTGTGT-GTG  95
      |||||||   |||||||      ||   | | || ||||||| ||| |||
seq2  TGTGTGTATAGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGGTG  91

seq1  TGTGTGTGTGCCACAATGCCAG-GCGTGTGTGTGTGTGTGTGTGTGTGTG  144
      |||||||||||      ||| | | |||| | ||||||||||||||||||
seq2  TGTGTGTGTGCGCTCGCGCCTGTGTGTGTATATGTGTGTGTGTGTGTGTG  141

seq1  TGTGTGTGTGCCACAATGCCAGGCGTGTGTGTGTGTGTGCCACAATGCCA  194
      ||||||||||     ||       ||||||||||||||      |||   
seq2  TGTGTGTGTGTGTGTAT-------GTGTGTGTGTGTGT------ATG---  175

seq1  GGCGTGTGTGTGTGTGTGCCACAATGCCAGGCGTGTGTGTGTGTGTGTGT  244
       | |||| ||||||||||     |||    | ||||||| | |||||| |
seq2  TGTGTGTATGTGTGTGTG----TATG---TGTGTGTGTGCGCGTGTGTAT  218

seq1  GTGTGTG------TGTGTGTG----TGCC--ACAATGCCAGGCGTGTGTG  282
      |||||||      ||| ||||    ||||  |  ||| |||  ||||  |
seq2  GTGTGTGCTCCCATGTATGTGCAGATGCCTGAGGATGTCAGAGGTGTTGG  268

seq1  TGTGTGTG-----------------TGTGTGTG----------TGTGTGC  305
        |   ||                  ||||| |          |  ||||
seq2  ATTCCTTGGAGCTGGAGGAACAGGCAGTGTGAGCTGCCTAGCATAGGTGC  318

seq1  -------------CAC---------AATGCCAG---------------GC  318
                   |||         || | |||               ||
seq2  TAAGAACTGAACTCACATCCTCTGAAAGGACAGTACACTCTCTTAGCTGC  368

seq1  --------------------GTGTGTGTGTGT----------GTG-----  333
                          | ||   ||| |          |||     
seq2  TGGACTCAACTCTACCTCAAGAGTTCCTGTTTCAAAAACCAGGTGGATAA  418

seq1  ------------TGC-----GTGTGTG----TGTG---------------  347
                  |||     | |  ||    | ||               
seq2  TTTCCATAGGAATGCCACCTGGGGTTGAAGATCTGGATCACCTACACACA  468

seq1  ---------------------TGTG-------------------------  351
                           | ||                         
seq2  CACAAAAATCTAAGATAACCCTCTGATTAAAACAAACAAGGGAAAAAAAC  518

seq1  ------------CCA-----CAAT------GCCAGGCGTGTGTGTGTGTG  378
                  |||     ||||      ||   | |||||||||||||
seq2  AATAAAACAAAACCATAACTCAATAGCATAGCTTTGTGTGTGTGTGTGTG  568

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGC  407
      |||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGC  597


seq1: chr19_5448505_5449360
seq2: B6Ng01-139I10.g_68_928

seq1  GAATTCTTAGCAGCCTGTCCGAGGCTGTCCGTGTGTTGCTCTGGTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGCCTGTCCGAGGCTGTCCGTGTGTTGCTCTGGTTGTCC  50

seq1  GTGTCCCTTTATCCGGTCAAGTCCTCATCTCTTTGTGCGCAGTATAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTTATCCGGTCAAGTCCTCATCTCTTTGTGCGCAGTATAGAGC  100

seq1  CCATGGGCCCCAGGCAGTGGTTCCGAGGGGTTCCTGGAGACCACGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCCCCAGGCAGTGGTTCCGAGGGGTTCCTGGAGACCACGAAGTG  150

seq1  TTGGGATGTGCGCGGGGTCACCTGCCCGGCCACACTCGCGCTCCACATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGTGCGCGGGGTCACCTGCCCGGCCACACTCGCGCTCCACATTC  200

seq1  TCGGCACCCGACGTCTCTCACTGCTGGATAGGGGCACTTGAGAGGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCACCCGACGTCTCTCACTGCTGGATAGGGGCACTTGAGAGGTTGCA  250

seq1  GGTGTCCATTTCCTGTCGAGGGGCCGCGAGCACGTGTCGCCAGGGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCATTTCCTGTCGAGGGGCCGCGAGCACGTGTCGCCAGGGGAGGG  300

seq1  AAGGAGCTGCGTCCGTTTCGCCGAGTCACAGCGGGCCGAGTCACTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTGCGTCCGTTTCGCCGAGTCACAGCGGGCCGAGTCACTGAGGC  350

seq1  TGAGTCACCCTGGGTGCCCCTCCCTTCCTGGCCCCAAACGGCCCCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACCCTGGGTGCCCCTCCCTTCCTGGCCCCAAACGGCCCCTAAGG  400

seq1  ACCGACGACCTGGGAGCGAGAGATGCCCCTGGCAGTGCTTCTAGCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACGACCTGGGAGCGAGAGATGCCCCTGGCAGTGCTTCTAGCCCAGA  450

seq1  ACGGGGGTCACTGAGATGCTGGGTCCCCCAGTATTGGGCTGGGGACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGGTCACTGAGATGCTGGGTCCCCCAGTATTGGGCTGGGGACATAG  500

seq1  CTGTCCAGACTTGCCTAAGCATGTGAGGTGC-TTCCTGGACTGGAGGGGC  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTCCAGACTTGCCTAAGCATGTGAGGTGCTTTCCTGGACTGGAGGGGC  550

seq1  CCCACATCCTTAGCTCACAGAGCTTGAACCCAG-TTTTCTCTCCCAGAAC  598
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCACATCCTTAGCTCACAGAGCTTGAACCCAGTTTTTCTCTCCCAGAAC  600

seq1  GCTGAGCCCCCACCCCCACCGACACTCAATCCCAACACATGCCTCAGA-T  647
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTGAGCCCCCACCCCCACCGACACTCAATCCCAACACATGCCTCAGATT  650

seq1  TTCTGCAAGAAAAGGAAGGAAAGGATGCCAGACCCCTTATAGGAGGC-TT  696
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  TTCTGCAAGAAAAGGAAGG-AAGGATGCCAGACCCCTTATAGGAGGCTTT  699

seq1  TTACTCTCTTCACTTTATTTCATGGACTTAAAAAACCCCATCAATTTTGA  746
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTACTCTCTTCACTTTATTTCATGGACTT-AAAAACCCCATCAATTTTGA  748

seq1  AC-TTTCAAGTTTTTAAGTCGACAGCTAGGCATGCATTTAATCCCAGCAT  795
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAGTTTTTAAGTCGACAGCTAGGCATGCATTTAATCCCAGCAT  798

seq1  TCAGGAGGCAGAGGCAGGCAG-ATCTCTGGGAGTTTGAAGCCAATTT-GG  843
      |||||| |||||||||||||| |||||||||||||||||| | |||| ||
seq2  TCAGGATGCAGAGGCAGGCAGAATCTCTGGGAGTTTGAAGGCTATTTGGG  848

seq1  TCTACAAAGTGAC  856
      |||||||||||||
seq2  TCTACAAAGTGAC  861


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