BAC Information

Click to search

BAC

Clone NameB6Ng01-140B02
Chromosome19 (Build37)
Map Location 9,953,806 - 10,094,898
singlet/doubletdoublet
Overlap geneIncenp, LOC100040215, Fth1, Best1, Rab3il1
Upstream geneAI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203
Downstream geneFads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140B02.bB6Ng01-140B02.g
ACCDH938893DH938894
length1,1601,028
definitionDH938893|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B02, 5' end.DH938894|Mus musculus domesticus DNA, BAC clone: B6Ng01-140B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,953,806 - 9,954,976)(10,093,864 - 10,094,898)
sequence
gaattcttgtatgtgggaagtgtggcacacattccaggccaggaaactgg
cagaaagcacggatcgcggagcccctaccatctcagatgtgtacctgagt
ttccaaggactctgacccactaccttaccaggttcctgataagtcgcctg
tcccacaactaaagactaagactgcaaagaaaatggcaggcagctcaaag
tgtcagctaatgttctatttggaagaacaagataaaggagcagccattta
tcactgtcaacacatgctaggagtgtgaacatgcaccactcttttatgca
catcaactcttttagaacagtagaaaaaaaggtaccatcaaatgttaaca
caggctagtgagctagatcagggatggtatgtcctgtcctttagttttca
aatatcttgtgatatactgaaagatcctgaaagaatgtaaaaggtcacag
aagccctgaaattggcaaaatagatgtcactgttagcagaactagcttca
ctgatttagataaatagaggtgcacaatgctctggccgctccttgaaccc
gtgtgtctgccaatgttctgaccgttccttgaacccaggtgtgtgtccac
tgctgcacctcactgccaggtgtttgtgatattggttgctaagatagagt
cagaaaatctccccagcaaccacagcagggccaatctggagttgctacac
ctgcaccagactctttccttgtacccctcccatacccatttcttgagaat
agacattgtttagatctggaaatcccctaatctctcccttctccttttcc
tcctgagggcctataaaaactgggacctctttcccctcgaggtcgactcc
tctacccctgtgtgggatatgagtcgtccccagagctctggctttccctc
gaataaagccacgtgggtttgcatcaagcttggtctctcttgagttcttg
ggggtctgctactgtcctgaggcctgagcgagggctcctctcggaggtct
ttcatatttgtgtatttctaaaacatcattaaagacagctgattgtacag
cagatcggtactagcatcactttctcatgcaaacccagaagctcttggaa
atggttatgctacattgcaacacgcgaatggggagacgctccaaactgct
ggccaagggt
gaattccaggtcagcctaatctatatggtaagaacctgtgtccaaaataa
agcaaaccaaaatgacgctaaggttggttacacagccccgctgcccgagt
ccttgcgcagagcacaaagctctagattccattctcagcactcctaagcc
aggcattgtggcacatgcctgtcgtgccagtacttgggagatggagagag
ggactcatccttggctaaatggggagtttgaggccaacctaggctacatg
agaccctgtacccacttcccctactccaaaaatcagactcgtgttgccat
taattcagagttcaaggtttaccctcagaaggatctctactcctggctcc
tacagggcccagtcacttctgcttatcgccatttaggactctgccataaa
caaaacaccatagctcagttcaatttacagtaggaagccaacctccagaa
accccagaatggccgggctccaagctttcctgggctaggatacatacctc
ctaggatatacctcttagagctgacatgacccggagcatggtccctctca
ccttctgcagggagtggagtgctccaaggcccctaagtccccagaacatt
ctagacactcagactcggatccctatgtccaagggctgggaagacggctc
agtgggtaagaaggctctctgtgtaagcctgaggacccaagttcagatcc
cagtgtggtcatcatatgcaccagcaagctcagcactgcgaggggacaca
gcaccgtgagaatcactggcatatactcgccaccagcttggctcaacaag
ttccaggttcagtgagagacctgggaatacagagagagacaggacacctg
acatctcctctgaccctctccctcccccaaagtgctcaagctggctccaa
cccagagaagggggtgtgttaccctgaggccatacagcaattgtctcgtt
cacccagcagaaaggctcacagcttcctcagacagctgctctcaacacac
agcctcaggcacaatgcattcctccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9953806_9954976
seq2: B6Ng01-140B02.b_48_1207

seq1  GAATTCTTGTATGTGGGAAGTGTGGCACACATTCCAGGCCAGGAAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTATGTGGGAAGTGTGGCACACATTCCAGGCCAGGAAACTGG  50

seq1  CAGAAAGCACGGATCGCGGAGCCCCTACCATCTCAGATGTGTACCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCACGGATCGCGGAGCCCCTACCATCTCAGATGTGTACCTGAGT  100

seq1  TTCCAAGGACTCTGACCCACTACCTTACCAGGTTCCTGATAAGTCGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGGACTCTGACCCACTACCTTACCAGGTTCCTGATAAGTCGCCTG  150

seq1  TCCCACAACTAAAGACTAAGACTGCAAAGAAAATGGCAGGCAGCTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAACTAAAGACTAAGACTGCAAAGAAAATGGCAGGCAGCTCAAAG  200

seq1  TGTCAGCTAATGTTCTATTTGGAAGAACAAGATAAAGGAGCAGCCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTAATGTTCTATTTGGAAGAACAAGATAAAGGAGCAGCCATTTA  250

seq1  TCACTGTCAACACATGCTAGGAGTGTGAACATGCACCACTCTTTTATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCAACACATGCTAGGAGTGTGAACATGCACCACTCTTTTATGCA  300

seq1  CATCAACTCTTTTAGAACAGTAGAAAAAAAGGTACCATCAAATGTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTCTTTTAGAACAGTAGAAAAAAAGGTACCATCAAATGTTAACA  350

seq1  CAGGCTAGTGAGCTAGATCAGGGATGGTATGTCCTGTCCTTTAGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTGAGCTAGATCAGGGATGGTATGTCCTGTCCTTTAGTTTTCA  400

seq1  AATATCTTGTGATATACTGAAAGATCCTGAAAGAATGTAAAAGGTCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTGTGATATACTGAAAGATCCTGAAAGAATGTAAAAGGTCACAG  450

seq1  AAGCCCTGAAATTGGCAAAATAGATGTCACTGTTAGCAGAACTAGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTGAAATTGGCAAAATAGATGTCACTGTTAGCAGAACTAGCTTCA  500

seq1  CTGATTTAGATAAATAGAGGTGCACAATGCTCTGGCCGCTCCTTGAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTAGATAAATAGAGGTGCACAATGCTCTGGCCGCTCCTTGAACCC  550

seq1  GTGTGTCTGCCAATGTTCTGACCGTTCCTTGAACCCAGGTGTGTGTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGCCAATGTTCTGACCGTTCCTTGAACCCAGGTGTGTGTCCAC  600

seq1  TGCTGCACCTCACTGCCAGGTGTTTGTGATATTGGTTGCTAAGATAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACCTCACTGCCAGGTGTTTGTGATATTGGTTGCTAAGATAGAGT  650

seq1  CAGAAAATCTCCCCAGCAACCACAGCAGGGCCAATCTGGAGTTGCTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCTCCCCAGCAACCACAGCAGGGCCAATCTGGAGTTGCTACAC  700

seq1  CTGCACCAGACTCTTTCCTTGTACCCCTCCCATACCCATTTCTTGAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAGACTCTTTCCTTGTACCCCTCCCATACCCATTTCTTGAGAAT  750

seq1  AGACATTGTTTAGATCTGGAAATCCCCTAATCTCTCCCTTCTCCTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTTTAGATCTGGAAATCCCCTAATCTCTCCCTTCTCCTTTTCC  800

seq1  TCCTGAGGGCCTATAAAAACTGGGACCTCTTTCCCCTCGAGGTCGACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGGCCTATAAAAACTGGGACCTCTTTCCCCTCGAGGTCGACTCC  850

seq1  TCTACCCCTGTGTGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCC-C  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTACCCCTGTGTGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCTC  900

seq1  GAATAAAGCCACGT-GGTTTGCATCAAGCTTGGTCTCTCTTGAGTTCTTG  948
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATAAAGCCACGTGGGTTTGCATCAAGCTTGGTCTCTCTTGAGTTCTTG  950

seq1  GGGGTCTGCTACTGTCCTGAGGCCTGAGCGAGGGGCTCCTCTCGGAGGTC  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGGTCTGCTACTGTCCTGAGGCCTGAGCGA-GGGCTCCTCTCGGAGGTC  999

seq1  TTTCAATATTTGTGTTAATTTCTAAAACACCATTAAAAGACAGCTGATTG  1048
      |||| ||||||||||  |||||||||||| |||| |||||||||||||||
seq2  TTTC-ATATTTGTGT--ATTTCTAAAACATCATT-AAAGACAGCTGATTG  1045

seq1  TACAGCAGATCGGTACTAGCATCAC-TTCCCATGCAAACCCAGAAAGCCC  1097
      ||||||||||||||||||||||||| ||| ||||||||||||| |||| |
seq2  TACAGCAGATCGGTACTAGCATCACTTTCTCATGCAAACCCAG-AAGCTC  1094

seq1  CATAGGGACATGGTTATAGCTACAATGCAACAGCAGAGATGGGGAGACGC  1147
           ||| |||||||| |||||| |||||||   || ||||||||||||
seq2  ---TTGGAAATGGTTAT-GCTACATTGCAACACGCGA-ATGGGGAGACGC  1139

seq1  TCCAAACTGTGCCTGGCCAAGGGT  1171
      |||||||||   ||||||||||||
seq2  TCCAAACTG---CTGGCCAAGGGT  1160

seq1: chr19_10093864_10094898
seq2: B6Ng01-140B02.g_69_1096 (reverse)

seq1  CTTGGAGGAATGCA-TGTGCCTGGGGCTGTGTGTTTGAGGAGCAGCCTGG  49
      |||||||||||||| |||||||| ||||||||| |||| |||||||   |
seq2  CTTGGAGGAATGCATTGTGCCTGAGGCTGTGTG-TTGA-GAGCAGC--TG  46

seq1  TCTGAAGGAAGCTGTGAGCCTTTCTGCTGGGTGGACCGAGACAATTGCTG  99
      |||| ||||||||||||||||||||||||||| || ||||||||||||||
seq2  TCTG-AGGAAGCTGTGAGCCTTTCTGCTGGGT-GAACGAGACAATTGCTG  94

seq1  TATGGCCCTCAGGGTAACAACACCCCCTTCTCTGGGTTGGAGCCAGCTTG  149
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TATGG-CCTCAGGGTAAC-ACACCCCCTTCTCTGGGTTGGAGCCAGCTTG  142

seq1  AGCACTTTGGGGGAGGAGGAGGGTCAGAGGAGATGTCAGGTGTCCTGTCT  199
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AGCACTTTGGGGGAGGGAGAGGGTCAGAGGAGATGTCAGGTGTCCTGTCT  192

seq1  CTCTCTGTATTCCCAGGTCTCTCACTGAACCTGGAACTTGTTGAGCCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTATTCCCAGGTCTCTCACTGAACCTGGAACTTGTTGAGCCAAG  242

seq1  CTGGTGGCGAGTATATGCCAGTGATTCTCACGGTGCTGTGTCCCCTCGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCGAGTATATGCCAGTGATTCTCACGGTGCTGTGTCCCCTCGCA  292

seq1  GTGCTGAGCTTGCTGGTGCATATGATGACCACACTGGGATCTGAACTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGCTTGCTGGTGCATATGATGACCACACTGGGATCTGAACTTGG  342

seq1  GTCCTCAGGCTTACACAGAGAGCCTTCTTACCCACTGAGCCGTCTTCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGGCTTACACAGAGAGCCTTCTTACCCACTGAGCCGTCTTCCCA  392

seq1  GCCCTTGGACATAGGGATCCGAGTCTGAGTGTCTAGAATGTTCTGGGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGACATAGGGATCCGAGTCTGAGTGTCTAGAATGTTCTGGGGAC  442

seq1  TTAGGGGCCTTGGAGCACTCCACTCCCTGCAGAAGGTGAGAGGGACCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCCTTGGAGCACTCCACTCCCTGCAGAAGGTGAGAGGGACCATG  492

seq1  CTCCGGGTCATGTCAGCTCTAAGAGGTATATCCTAGGAGGTATGTATCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGTCATGTCAGCTCTAAGAGGTATATCCTAGGAGGTATGTATCCT  542

seq1  AGCCCAGGAAAGCTTGGAGCCCGGCCATTCTGGGGTTTCTGGAGGTTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAAGCTTGGAGCCCGGCCATTCTGGGGTTTCTGGAGGTTGGC  592

seq1  TTCCTACTGTAAATTGAACTGAGCTATGGTGTTTTGTTTATGGCAGAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTAAATTGAACTGAGCTATGGTGTTTTGTTTATGGCAGAGTC  642

seq1  CTAAATGGCGATAAGCAGAAGTGACTGGGCCCTGTAGGAGCCAGGAGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGCGATAAGCAGAAGTGACTGGGCCCTGTAGGAGCCAGGAGTAG  692

seq1  AGATCCTTCTGAGGGTAAACCTTGAACTCTGAATTAATGGCAACACGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTCTGAGGGTAAACCTTGAACTCTGAATTAATGGCAACACGAGT  742

seq1  CTGATTTTTGGAGTAGGGGAAGTGGGTACAGGGTCTCATGTAGCCTAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTTGGAGTAGGGGAAGTGGGTACAGGGTCTCATGTAGCCTAGGT  792

seq1  TGGCCTCAAACTCCCCATTTAGCCAAGGATGAGTCCCTCTCTCCATCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAACTCCCCATTTAGCCAAGGATGAGTCCCTCTCTCCATCTCC  842

seq1  CAAGTACTGGCACGACAGGCATGTGCCACAATGCCTGGCTTAGGAGTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTGGCACGACAGGCATGTGCCACAATGCCTGGCTTAGGAGTGCT  892

seq1  GAGAATGGAATCTAGAGCTTTGTGCTCTGCGCAAGGACTCGGGCAGCGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGAATCTAGAGCTTTGTGCTCTGCGCAAGGACTCGGGCAGCGGG  942

seq1  GCTGTGTAACCAACCTTAGCGTCATTTTGGTTTGCTTTATTTTGGACACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAACCAACCTTAGCGTCATTTTGGTTTGCTTTATTTTGGACACA  992

seq1  GGTTCTTACCATATAGATTAGGCTGACCTGGAATTC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTACCATATAGATTAGGCTGACCTGGAATTC  1028