BAC Information

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BAC

Clone NameB6Ng01-141F06
Chromosome19 (Build37)
Map Location 45,101,644 - 45,233,782
singlet/doubletdoublet
Overlap genePdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
Upstream geneCyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2
Downstream geneLbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F06.bB6Ng01-141F06.g
ACCDH939813DH939814
length9861,057
definitionDH939813|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F06, 5' end.DH939814|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,101,644 - 45,102,630)(45,232,720 - 45,233,782)
sequence
gaattcttaggactaatctagtagaatcctgggtcctactggaccacacc
atgagttttgaggaactagaaaagccttcccatcctgtcctctacactga
accctgcttgaggctgggggatgattgcagtgacaccctccccccacttg
aggactctcagtttacgaccctcagattatggtgagccaggtccatcgtg
aaaaacctcacactagtcacaggctccagacttgagtctgtctgtctcct
tactgggaagcagtccaggattagggaatgcacatgacatgggttgccca
ctagcacacggtgttcttggacatccagcttgtcctgaaaggccagagcc
cttttgacagccggggtggatcagagccaccagtgtggtggtgctctcag
tagtcaaatggataggatagaggtacacagaacccagaggcagcaggagg
acttgaggtcactaggaagggtcatggggatccttaagtataggggagag
tttagggatactttgagggacctttagagctgagctgagagactgctgga
gttgcctagcctcagggggaggtagctgggtgagaatccgagcatcatca
acaggtccaagggcggagggacagtcaggagcaaggctctggtccttaac
aactcgtaggtcagaggctaggggcagcaggccaggcccagggaccctga
ccacaagttccataggttcccgagccttgtttcggtagccctgcggatgg
tgtccactgctcgctggtgggtttacctgctccaggctttcgccatccac
tgccaccagctcaaagccagccttggcacagagatgggaatattcagttc
tgattcattctcacccaccatccaacctgaaagcagccggtctttcactc
cacaagccagaacctcctaccccatctgggtgcagggagtggaacaatag
gacttttgtgctgcactgttgggggcaggtggggca
gaattccctgcggagagggaaaagtaccgcgttgcttctcggcctcaagg
atccccaaacttcctgaagtctgatacccttgggaggcctcgcccagggc
ctgggaatccccaagcagtcccaggagagagcgaaatccagaggcccgga
gcaggcaggcgctgtggatagttcgtttggacttcgtgcatccgccgcgg
cgcaaggaatgaacccgggataaactatgctctagtcccagaacttagca
gaatcgaagagcagcagcggggcttaaggcttgcatctgctggtccaatt
atgagcgccaggacaaagctatgaagacggagaaagtatcaggcatgggt
gcccaattttgtcttctctctcttcaagagaaggtgagaatggctttgga
gtcatttgggggacttttatgtttgggctctgggacctctgagttcttca
gttggacagcctagagaggaaatatctatcggggccctccagtaagaaag
gactcgaccttgtccaggatatcaaaaggcacaggtcgcacacagaagac
tcttccatatttcaaaggtacaaacggaggggatgggaaacacccgggaa
gagataaaggtggcgatctaaagctgcagccccacaccgaatttagaggc
agccagtctggtccagtttagaaaaaaaaaaaaaaaaaatctcacggctc
tgggaagtcacttctggactttgcttggtactgggtgttgcgtctttgaa
tgactgctttcttagaggattacatggactcctctcctgggtctatacag
agcttgctgaagctcagtccggagagctctctgtggctcagaaagtctgt
cagggatcctgggttttctttttactcaaaacaagaggctcttccttgga
tgaggcgttctaaaagaagcaagtctctcagcttactcagccctcttttt
cttgggcttctaggtgtagactcttggtccctggataacacctgccatga
gtgccacagtcactgaacatgcctggtaaagttggtgtagcaagtctgtg
tgactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45101644_45102630
seq2: B6Ng01-141F06.b_48_1033

seq1  GAATTCTTAGGACTAATCTAGTAGAATCCTGGGTCCTACTGGACCACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGACTAATCTAGTAGAATCCTGGGTCCTACTGGACCACACC  50

seq1  ATGAGTTTTGAGGAACTAGAAAAGCCTTCCCATCCTGTCCTCTACACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTTGAGGAACTAGAAAAGCCTTCCCATCCTGTCCTCTACACTGA  100

seq1  ACCCTGCTTGAGGCTGGGGGATGATTGCAGTGACACCCTCCCCCCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTGAGGCTGGGGGATGATTGCAGTGACACCCTCCCCCCACTTG  150

seq1  AGGACTCTCAGTTTACGACCCTCAGATTATGGTGAGCCAGGTCCATCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCAGTTTACGACCCTCAGATTATGGTGAGCCAGGTCCATCGTG  200

seq1  AAAAACCTCACACTAGTCACAGGCTCCAGACTTGAGTCTGTCTGTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTCACACTAGTCACAGGCTCCAGACTTGAGTCTGTCTGTCTCCT  250

seq1  TACTGGGAAGCAGTCCAGGATTAGGGAATGCACATGACATGGGTTGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAAGCAGTCCAGGATTAGGGAATGCACATGACATGGGTTGCCCA  300

seq1  CTAGCACACGGTGTTCTTGGACATCCAGCTTGTCCTGAAAGGCCAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACACGGTGTTCTTGGACATCCAGCTTGTCCTGAAAGGCCAGAGCC  350

seq1  CTTTTGACAGCCGGGGTGGATCAGAGCCACCAGTGTGGTGGTGCTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACAGCCGGGGTGGATCAGAGCCACCAGTGTGGTGGTGCTCTCAG  400

seq1  TAGTCAAATGGATAGGATAGAGGTACACAGAACCCAGAGGCAGCAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAATGGATAGGATAGAGGTACACAGAACCCAGAGGCAGCAGGAGG  450

seq1  ACTTGAGGTCACTAGGAAGGGTCATGGGGATCCTTAAGTATAGGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGTCACTAGGAAGGGTCATGGGGATCCTTAAGTATAGGGGAGAG  500

seq1  TTTAGGGATACTTTGAGGGACCTTTAGAGCTGAGCTGAGAGACTGCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGATACTTTGAGGGACCTTTAGAGCTGAGCTGAGAGACTGCTGGA  550

seq1  GTTGCCTAGCCTCAGGGGGAGGTAGCTGGGTGAGAATCCGAGCATCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTAGCCTCAGGGGGAGGTAGCTGGGTGAGAATCCGAGCATCATCA  600

seq1  ACAGGTCCAAGGGCGGAGGGACAGTCAGGAGCAAGGCTCTGGTCCTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCCAAGGGCGGAGGGACAGTCAGGAGCAAGGCTCTGGTCCTTAAC  650

seq1  AACTCGTAGGTCAGAGGCTAGGGGCAGCAGGCCAGGCCCAGGGACCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGTAGGTCAGAGGCTAGGGGCAGCAGGCCAGGCCCAGGGACCCTGA  700

seq1  CCACAAGTTCCATAGGTTCCCGAGCCTTGTTTCGGTAAGCCCTGCGGATG  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCACAAGTTCCATAGGTTCCCGAGCCTTGTTTCGGT-AGCCCTGCGGATG  749

seq1  GTGTCCACTGCTCGCTGGTGGG-TTACCTGCTCCAGGCTTTCGCCATCCA  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGTCCACTGCTCGCTGGTGGGTTTACCTGCTCCAGGCTTTCGCCATCCA  799

seq1  CTGCCACCAGCTCAAAGCCAGCC-TGGCACAGAGAT-GGAATATTCAGTT  847
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  CTGCCACCAGCTCAAAGCCAGCCTTGGCACAGAGATGGGAATATTCAGTT  849

seq1  CTGAGTCATTCCCACCCACCACCCAACCTGAAGGCAG-CGGCCTTTCACC  896
      |||| |||||| ||||||||| |||||||||| |||| ||| |||||| |
seq2  CTGATTCATTCTCACCCACCATCCAACCTGAAAGCAGCCGGTCTTTCA-C  898

seq1  TCCACCAGCCAGGACACTCCTACCCCATCTGGGTGCAGGGAGTGG-ACAA  945
      ||||| |||||| || ||||||||||||||||||||||||||||| ||||
seq2  TCCACAAGCCAGAAC-CTCCTACCCCATCTGGGTGCAGGGAGTGGAACAA  947

seq1  TAGGACTTTTGTGCCTGCAGCTGTTGGGGGCAGGGTGGGGCA  987
      ||||||||||||| ||||| |||||||||||| |||||||||
seq2  TAGGACTTTTGTG-CTGCA-CTGTTGGGGGCA-GGTGGGGCA  986

seq1: chr19_45232720_45233782
seq2: B6Ng01-141F06.g_68_1124 (reverse)

seq1  ACAGTCACACAGAACTGCCTACACCAACTTTACCCAAGCCACTGTTCAGT  50
      |||||||||||| |||  ||||||||||||||||  || || ||||||||
seq2  ACAGTCACACAG-ACTTGCTACACCAACTTTACC--AGGCA-TGTTCAGT  46

seq1  GGCTGTTGGCACTCATGGCAGGTTGTAATACAGGGACCAAGAGTCTACCA  100
      | ||| |||||||||||||||| ||| || ||||||||||||||||| ||
seq2  GACTG-TGGCACTCATGGCAGG-TGTTATCCAGGGACCAAGAGTCTA-CA  93

seq1  CCTAGAAAGCCCAAGGAAAAAGA-GGCTGGGTAGGCTG-GGGGCTTGCTT  148
      ||||| |||||||| |||||||| ||||| ||| |||| | | |||||||
seq2  CCTAG-AAGCCCAA-GAAAAAGAGGGCTGAGTAAGCTGAGAGACTTGCTT  141

seq1  CTCTGAGACGCCCTCATCCAAGGAAGGGCCTCTTGGTTCTGAGTAAAAAG  198
      || | |||   ||||||||||||||| ||||||| ||| |||||||||||
seq2  CTTTTAGAACGCCTCATCCAAGGAAGAGCCTCTT-GTTTTGAGTAAAAAG  190

seq1  AAAACCCAGGATCCCTGGCAGGCTTTCTTGGCCACAG-GTGCTCT-CGGA  246
      ||||||||||||||||| ||| ||||||  ||||||| | ||||| ||||
seq2  AAAACCCAGGATCCCTGACAGACTTTCTGAGCCACAGAGAGCTCTCCGGA  240

seq1  CTG-GCTTCAGCAAGCTCTGTATTAGACCCAGGAGAGG-GTCCATGTAAT  294
      ||| |||||||||||||||||| ||||||||||||||| |||||||||||
seq2  CTGAGCTTCAGCAAGCTCTGTA-TAGACCCAGGAGAGGAGTCCATGTAAT  289

seq1  -CTCTAAG-GAGCAGTCATTCAAAGACGCAACACCCAGTACCAAGCAAAG  342
       |||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGAAAGCAGTCATTCAAAGACGCAACACCCAGTACCAAGCAAAG  339

seq1  TCCAGAAGTGACTTCCCAGAGCCGTGAGTTTTTTTTTTTTTTTTTTTTTT  392
      ||||||||||||||||||||||||||||    ||||||||||||||||||
seq2  TCCAGAAGTGACTTCCCAGAGCCGTGAG---ATTTTTTTTTTTTTTTTTT  386

seq1  CTAAACTGGACCAGACTGGCTGCCTCTAAATTCGGTGTGGGGCTGCAGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGGACCAGACTGGCTGCCTCTAAATTCGGTGTGGGGCTGCAGCT  436

seq1  TTAGATCGCCACCTTTATCTCTTCCCGGGTGTTTCCCATCCCCTCCGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCGCCACCTTTATCTCTTCCCGGGTGTTTCCCATCCCCTCCGTTT  486

seq1  GTACCTTTGAAATATGGAAGAGTCTTCTGTGTGCGACCTGTGCCTTTTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTTGAAATATGGAAGAGTCTTCTGTGTGCGACCTGTGCCTTTTGA  536

seq1  TATCCTGGACAAGGTCGAGTCCTTTCTTACTGGAGGGCCCCGATAGATAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGACAAGGTCGAGTCCTTTCTTACTGGAGGGCCCCGATAGATAT  586

seq1  TTCCTCTCTAGGCTGTCCAACTGAGGAACTCAGAGGTCCCAGAGCCCAAA  642
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCCTCTCTAGGCTGTCCAACTGAAGAACTCAGAGGTCCCAGAGCCCAAA  636

seq1  CATAAAAGTCCCCCAAATGACTCCAAAGCCATTCTCACCTTCTCTTGAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTCCCCCAAATGACTCCAAAGCCATTCTCACCTTCTCTTGAAG  686

seq1  AGAGAGAAGACAAAATTGGGCACCCATGCCTGATACTTTCTCCGTCTTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGACAAAATTGGGCACCCATGCCTGATACTTTCTCCGTCTTCA  736

seq1  TAGCTTTGTCCTGGCGCTCATAATTGGACCAGCAGATGCAAGCCTTAAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGTCCTGGCGCTCATAATTGGACCAGCAGATGCAAGCCTTAAGC  786

seq1  CCCGCTGCTGCTCTTCGATTCTGCTAAGTTCTGGGACTAGAGCATAGTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGCTGCTCTTCGATTCTGCTAAGTTCTGGGACTAGAGCATAGTTT  836

seq1  ATCCCGGGTTCATTCCTTGCGCCGCGGCGGATGCACGAAGTCCAAACGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGGGTTCATTCCTTGCGCCGCGGCGGATGCACGAAGTCCAAACGAA  886

seq1  CTATCCACAGCGCCTGCCTGCTCCGGGCCTCTGGATTTCGCTCTCTCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACAGCGCCTGCCTGCTCCGGGCCTCTGGATTTCGCTCTCTCCTG  936

seq1  GGACTGCTTGGGGATTCCCAGGCCCTGGGCGAGGCCTCCCAAGGGTATCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTGGGGATTCCCAGGCCCTGGGCGAGGCCTCCCAAGGGTATCA  986

seq1  GACTTCAGGAAGTTTGGGGATCCTTGAGGCCGAGAAGCAACGCGGTACTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGAAGTTTGGGGATCCTTGAGGCCGAGAAGCAACGCGGTACTT  1036

seq1  TTCCCTCTCCGCAGGGAATTC  1063
      |||||||||||||||||||||
seq2  TTCCCTCTCCGCAGGGAATTC  1057