BAC Information

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BAC

Clone NameB6Ng01-142A16
Chromosome19 (Build37)
Map Location 10,647,268 - 10,798,213
singlet/doubletdoublet
Overlap geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5
Upstream geneStxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik
Downstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A16.bB6Ng01-142A16.g
ACCDH940340DH940341
length1,0361,112
definitionDH940340|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A16, 5' end.DH940341|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,797,165 - 10,798,213)(10,647,268 - 10,648,415)
sequence
gaattcctctctagatacctggcatcatggccaaaagcctataatccaca
gggttaggggctggggcggcggaattcctgggttctgtcccaccagtgaa
gcacaccagctctttccagtccccaggccttagtttcctcttctaaaaag
ccctccctcatcctaagcaagagagtaaaaaggcatggcatggccacgct
gcctgctcctttgccactgttgtcttgagatagctgccaagctcctttgc
cactgttttcttgaaatagctgccaccagccacccagaggccccagggac
aagacagagcttggtcggagaagtgctagagaggatgtgccgtgctcgac
attgccaagcccccacctcaccagcccttcctttctgcagatttccagcc
caaggttcagagccgcctggtcgggggcagcagtgtgtgtgagggcatcg
ctgaagtgcgccagagatcacagtgggaggccctgtgtgacagttctgca
gccaggggccggggacggtgggaagagctatgtcgggagcagcagtgtgg
cgacctcatctccttccacacggtggatgctgacaaaacctcccccgggt
tcctctgtgcccaggagaagctgtctcagtgttaccatctccagaaaaaa
aaacactgcaacaagagggtattcgtcacatgtgagttgactgcagaggg
cagtgaaagacttttcctctggaacctagtcagtgaacatagctctaaag
agcagatctggaaggcagaaaaggcttctgggaaaaggagagtaaatggg
attctgggagcaaaatcagcaatgatgagtagagcaggcaaggctcacgt
ggacctctgtcaagctactgagacatgccaggactctcccttcccttcta
tctcctgctttcccgagatgcaagctagaaaattagggaggggtgggtga
aacatacttaatatttgatgtaactgatatatctagagaattgtacatga
tggtgacatgatgaaggtggatgataggtacatgga
gaattccatgaaaataagcatataagagacacatgagttatccaaagaga
tggaagaatttgtaaagcagaagaaatggaaaaccataaaggcctgcaag
acctccccagaacagctaaaagcatttgctgctctttagaaaaacagagt
tcactagtgtccacaaagtgcgtttcacactccctgcaacttcagctaca
gatctaagacccagagtaccccccctctccccgcatgatcgcgcacacac
aaacaaacacacacacacacacacacatacactttcaaatctttttttgg
aggggagatggtgttgagacaggattttactatgtagccttagctgtcct
ggaacttgctctgtaggccggctgacttcaaactcacagagactctcctt
cctctgcctctgggattaaaggcaggcaccaacatagcttcaaattatat
tcttaaaaaggcaggctgaaaccccgaggactggatctgatctggggcct
ataggaaaactaaagagaagcatgggaggctgagtttccaatgtaaagat
ggagactctactcagggcatacaagaaggcaacactcttgcatggctgtt
tcccagaaacacccgacgtctgtaatattaaccacgggacactaacacct
aaacataccctctgtcgacacccacataaactgatggcaaaacctgactt
cctgtttcaacgctggtaggcttatttgaggcaaaggtaactgttacaaa
tagaaaagtccctggatccctgaacacagataggtaggcaaaagtgccct
atgattcgtcacagcccagaacaccttcatcttacctacttctctccaag
gattctgaaccatgtcgaagaatacagcgcttccagaggatagaaacttc
tagttgattttcttttaatagacagagtttgatcaatgcaggcacagagc
tgtcaagtatgcctgctgggctgtatcccagcctacactatctctgtgtt
gctttgcttttgtgttttcgtcaacttatgcaggtagattaatcggacac
agcttgatatagctcttattcccataggcccagatcagcctgactttcat
gctgctgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10797165_10798213
seq2: B6Ng01-142A16.b_44_1079 (reverse)

seq1  TCCATGTCCCTATCCATCCACCCTCCATTCATGTCACCCATCCATGTACC  50
      ||||||| ||||| |||||||| ||   |||||||| |||| ||||||| 
seq2  TCCATGTACCTAT-CATCCACCTTC--ATCATGTCA-CCAT-CATGTAC-  44

seq1  AATTTCTCTTAGATATTATTCAGTTACCATTCAAATATTAAGTATGTTTC  100
       | ||||| |||||||   ||||||||   ||||||||||||||||||||
seq2  -AATTCTC-TAGATAT--ATCAGTTAC--ATCAAATATTAAGTATGTTTC  88

seq1  ACCCACCCCTCCCTAATTTTCTAGCTTGCATCTCGGGAAAGCAGGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCTCCCTAATTTTCTAGCTTGCATCTCGGGAAAGCAGGAGATA  138

seq1  GAAGGGAAGGGAGAGTCCTGGCATGTCTCAGTAGCTTGACAGAGGTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGGGAGAGTCCTGGCATGTCTCAGTAGCTTGACAGAGGTCCAC  188

seq1  GTGAGCCTTGCCTGCTCTACTCATCATTGCTGATTTTTGCTCCCAGAATC  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGAGCCTTGCCTGCTCTACTCATCATTGCTGA-TTTTGCTCCCAGAATC  237

seq1  CCATTTACTCTCCTTTTCCCAGAAGCCTTTTCTGCCTTCCAGATCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACTCTCCTTTTCCCAGAAGCCTTTTCTGCCTTCCAGATCTGCTC  287

seq1  TTTAGAGCTATGTTCACTGACTAGGTTCCAGAGGAAAAGTCTTTCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTATGTTCACTGACTAGGTTCCAGAGGAAAAGTCTTTCACTGC  337

seq1  CCTCTGCAGTCAACTCACATGTGACGAATACCCTCTTGTTGCAGTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAGTCAACTCACATGTGACGAATACCCTCTTGTTGCAGTGTTTT  387

seq1  TTTTTCTGGAGATGGTAACACTGAGACAGCTTCTCCTGGGCACAGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGAGATGGTAACACTGAGACAGCTTCTCCTGGGCACAGAGGAA  437

seq1  CCCGGGGGAGGTTTTGTCAGCATCCACCGTGTGGAAGGAGATGAGGTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGGAGGTTTTGTCAGCATCCACCGTGTGGAAGGAGATGAGGTCGC  487

seq1  CACACTGCTGCTCCCGACATAGCTCTTCCCACCGTCCCCGGCCCCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCTGCTCCCGACATAGCTCTTCCCACCGTCCCCGGCCCCTGGCT  537

seq1  GCAGAACTGTCACACAGGGCCTCCCACTGTGATCTCTGGCGCACTTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTGTCACACAGGGCCTCCCACTGTGATCTCTGGCGCACTTCAGC  587

seq1  GATGCCCTCACACACACTGCTGCCCCCGACCAGGCGGCTCTGAACCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCACACACACTGCTGCCCCCGACCAGGCGGCTCTGAACCTTGG  637

seq1  GCTGGAAATCTGCAGAAAGGAAGGGCTGGTGAGGTGGGGGCTTGGCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAATCTGCAGAAAGGAAGGGCTGGTGAGGTGGGGGCTTGGCAATG  687

seq1  TCGAGCACGGCACATCCTCTCTAGCACTTCTCCGACCAAGCTCTGTCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCACGGCACATCCTCTCTAGCACTTCTCCGACCAAGCTCTGTCTTG  737

seq1  TCCCTGGGGCCTCTGGGTGGCTGGTGGCAGCTATTTCAAGAAAACAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGCCTCTGGGTGGCTGGTGGCAGCTATTTCAAGAAAACAGTGG  787

seq1  CAAAGGAGCTTGGCAGCTATCTCAAGACAACAGTGGCAAAGGAGCAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTTGGCAGCTATCTCAAGACAACAGTGGCAAAGGAGCAGGCA  837

seq1  GCGTGGCCATGCCATGCCTTTTTACTCTCTTGCTTAGGATGAGGGAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCCATGCCATGCCTTTTTACTCTCTTGCTTAGGATGAGGGAGGGC  887

seq1  TTTTTAGAAGAGGAAACTAAGGCCTGGGGACTGGAAAGAGCTGGTGTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAGAGGAAACTAAGGCCTGGGGACTGGAAAGAGCTGGTGTGCT  937

seq1  TCACTGGTGGGACAGAACCCAGGAATTCCGCCGCCCCAGCCCCTAACCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTGGGACAGAACCCAGGAATTCCGCCGCCCCAGCCCCTAACCCT  987

seq1  GTGGATTATAGGCTTTTGGCCATGATGCCAGGTATCTAGAGAGGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTATAGGCTTTTGGCCATGATGCCAGGTATCTAGAGAGGAATTC  1036

seq1: chr19_10647268_10648415
seq2: B6Ng01-142A16.g_68_1179

seq1  GAATTCCATGAAAATAAGCATATAAGAGACACATGAGTTATCCAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAAATAAGCATATAAGAGACACATGAGTTATCCAAAGAGA  50

seq1  TGGAAGAATTTGTAAAGCAGAAGAAATGGAAAACCATAAAGGCCTGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATTTGTAAAGCAGAAGAAATGGAAAACCATAAAGGCCTGCAAG  100

seq1  ACCTCCCCAGAACAGCTAAAAGCATTTGCTGCTCTTTAGAAAAACAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCAGAACAGCTAAAAGCATTTGCTGCTCTTTAGAAAAACAGAGT  150

seq1  TCACTAGTGTCCACAAAGTGCGTTTCACACTCCCTGCAACTTCAGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTGTCCACAAAGTGCGTTTCACACTCCCTGCAACTTCAGCTACA  200

seq1  GATCTAAGACCCAGAGTACCCCCCCTCTCCCCGCATGATCGCGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGACCCAGAGTACCCCCCCTCTCCCCGCATGATCGCGCACACAC  250

seq1  AAACAAACACACACACACACACACACATACACTTTCAAATCTTTTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACACACACACACACACACATACACTTTCAAATCTTTTTTTGG  300

seq1  AGGGGAGATGGTGTTGAGACAGGATTTTACTATGTAGCCTTAGCTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATGGTGTTGAGACAGGATTTTACTATGTAGCCTTAGCTGTCCT  350

seq1  GGAACTTGCTCTGTAGGCCGGCTGACTTCAAACTCACAGAGACTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGCTCTGTAGGCCGGCTGACTTCAAACTCACAGAGACTCTCCTT  400

seq1  CCTCTGCCTCTGGGATTAAAGGCAGGCACCAACATAGCTTCAAATTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTGGGATTAAAGGCAGGCACCAACATAGCTTCAAATTATAT  450

seq1  TCTTAAAAAGGCAGGCTGAAACCCCGAGGACTGGATCTGATCTGGGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAGGCAGGCTGAAACCCCGAGGACTGGATCTGATCTGGGGCCT  500

seq1  ATAGGAAAACTAAAGAGAAGCATGGGAGGCTGAGTTTCCAATGTAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAACTAAAGAGAAGCATGGGAGGCTGAGTTTCCAATGTAAAGAT  550

seq1  GGAGACTCTACTCAGGGCATACAAGAAGGCAACACTCTTGCATGGCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTACTCAGGGCATACAAGAAGGCAACACTCTTGCATGGCTGTT  600

seq1  TCCCAGAAACACCCGACGTCTGTAATATTAACCACGGGACACTAACACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAACACCCGACGTCTGTAATATTAACCACGGGACACTAACACCT  650

seq1  AAACATACCCTCTGTCGACACCCACAT-AACTGATGGCAAAACCTGACTT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAACATACCCTCTGTCGACACCCACATAAACTGATGGCAAAACCTGACTT  700

seq1  CCTGTTTCAACGCTGGTAGGCTTATTTGAGGCAAAGGTAACTGTTACAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCAACGCTGGTAGGCTTATTTGAGGCAAAGGTAACTGTTACAAA  750

seq1  TAGAAAAGTCCCTGGATCCCTGAACACAGATAGGTAGGCAAAAGTGCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTCCCTGGATCCCTGAACACAGATAGGTAGGCAAAAGTGCCCT  800

seq1  ATGATTCGTCACAGCCCAGAACACCTTCATCTTACCTACTTCTCTCCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCGTCACAGCCCAGAACACCTTCATCTTACCTACTTCTCTCCAAG  850

seq1  GATTCTGAACCATGTCGAAGAATAACAGCGCTTCCAGAGGATAGAAACTT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATTCTGAACCATGTCGAAGAAT-ACAGCGCTTCCAGAGGATAGAAACTT  899

seq1  CTAGTTGGATTTTCTTTTAATAGGACAGAGTTTGATCAAATGCAGGGCAC  949
      |||||| ||||||||||||||| |||||||||||||| |||||| |||||
seq2  CTAGTT-GATTTTCTTTTAATA-GACAGAGTTTGATC-AATGCA-GGCAC  945

seq1  AGAGCCTGTCAGGTTAATGCCCTGCTGGGCTGTATTCCCCAGCCCTTACC  999
      |||| |||||| ||  ||| |||||||||||||||  |||||||  || |
seq2  AGAG-CTGTCAAGT--ATG-CCTGCTGGGCTGTAT--CCCAGCC--TA-C  986

seq1  ACTATCTTTCTGGTGTTTTGCTTTGGCTTTTTGTTGTTTTTCTGTCAAAC  1049
      ||||||| | || || |||||||          |||| |||  |||||  
seq2  ACTATCTCTGTGTTGCTTTGCTT----------TTGTGTTTTCGTCAA--  1024

seq1  CTTTATGCAGGTAGGATGTAATCAGACCAACAGCTTGAATATAAAGCATC  1099
        ||||||||||| ||| ||||| |||  ||||||||   ||| ||| ||
seq2  -CTTATGCAGGTA-GAT-TAATCGGAC--ACAGCTTG---ATATAGC-TC  1065

seq1  TATCTCACATAGGCCCAGATCAGGTCTGACTTTCATGGCTGCTGACTTC  1148
      |   || ||||||||||||||| | ||||||||||| ||||||||||||
seq2  TTATTCCCATAGGCCCAGATCA-GCCTGACTTTCAT-GCTGCTGACTTC  1112