BAC Information

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BAC

Clone NameB6Ng01-143C19
Chromosome19 (Build37)
Map Location 53,747,490 - 53,885,658
singlet/doubletdoublet
Overlap geneRbm20
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
Downstream geneLOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C19.bB6Ng01-143C19.g
ACCDH941180DH941181
length1,0241,141
definitionDH941180|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C19, 5' end.DH941181|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,884,617 - 53,885,658)(53,747,490 - 53,748,643)
sequence
gaattcactcataggcttagacctgccagtacagaattgagcatttcagt
acatagcaatggaccaaacctccacagaatctgccactaatcctgactct
ctgagattggttccttagctcccacatagtggaaggagagaactgactct
cacagactgtcctctgacttccataagaatactatgacacatgcaaatgc
atgcctgtcccaataattaataataataataataataataataataataa
taataataatttgtagagattgtgtcctgaaccataaaaaccagcccagc
atgctaactcctcaccccatcattttagtggcatgagaaagtccatatgc
tccttgctttgaaaagtatgccagaataaactgtgtgtatatttatggca
catattttcatcctagtcctcattttaaatccaaaaacagtaaaacagct
tttacatatcagtagtatacacagcaaccaaaaaccctataagtgaaaaa
caaaatctaaattcgaggtagtaagtgccagtcaactttcacagaatctt
aggagaaatgggaggagccggtctgccacatcgctctgtggccttgtccg
ttgactgtattgtgtttctgggcaaacagagactggactgtctataaatg
agacaggctttcctggtgaatctgctataagcggtttccacagtcgaggc
ttttggctaagccatattttctgtgtcttaaggttccccttgcggggagt
gggtgtaaccaagaaatgtgttcgggatgctggtgaaatggaatcccagg
gcacctgaacgcgccagtgaaatctgaagtctggactgatggaccagcca
ggctgcacagccaatctccttataaagcagcgctgggaggaatgcacagc
tgggacacatctgtctcactgtccaggcctgtgcgataaaactcagagct
gatagctgagtgggggcgggaggccacagcagcagagaggtgaaggtttg
ggtgagagagaacaacagggtgtg
gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaca
aaaacaaaaataaatttaaaaaaacccatcttattaatgactttactttg
ttaatggctgaacagtgaaatcgttaaatttcactgctattaaaaaagca
atgttgcaaagtgaaaattcaagttgtatacatttcagtaaattttattc
caaatgtttaaataatataaaagaccacacaaggaaaaggttcttgcctc
gccccaatttgtagaggtgctcaccgctgataattacttgcttgtataat
ttccccagagatgttctatttaggacatttagtcatgacataattctctt
gagagactagcactttctttcaggaaatctctcctgagccggcagagacc
tccctgtagagagctgcgcagtcaggagcaggaaccttctttctacacac
cgtttcccactgctcacttggctgtgtctagcttttgctattatgaacaa
tactagtcaattcccttgaaagtacagctgtgattggggatatatatata
tattcctaggagagaaactgccaaatcagttttctgtgttgaaatccaaa
aatacatatttttagttagtatacaacacaatgggtttgactacagcgtt
tttcatacttgtctatcttcaccccttgcccatactcacctcctcactgc
ccttccctgtgccttccgcttcctccccaacacccttgttgcaatgttaa
tagacaattccagctcccatgcagaaactgcagcagtctgcgcttctcct
tgcagcagagaaggaggtctgtgtctcccagccttcaccggctctgagag
caccgaactttaccatctagaggtgtacacaccgggaagggccgccacac
ctgaagtgatcccttcggcagaggaatgatcacatcagcctgaaagtagg
cgaccttttgagtagaggacattgttacaatgatacagaaaagcgataca
gtgttaagaaacgatgcatgttttacagaaaaggtgctgagcccagctct
tgcagttcagttcaagcgaccttgaacttggacacgttctcagctctctg
ttccttaaataaacgattgaaacagagcctgaagccagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53884617_53885658
seq2: B6Ng01-143C19.b_48_1071 (reverse)

seq1  CACACCCTTGTTTGTCTCTCTCTCACCCCAACCCTCTCCAACCCTCTCTG  50
      ||||||||   |||| |||||||||||| |||| ||      ||||||||
seq2  CACACCCT--GTTGT-TCTCTCTCACCCAAACCTTC-----ACCTCTCTG  42

seq1  CCTGCTGTGGCCCTCCCCGCCCCCACTCAGCTTATCAGCTCTGAGTTTTT  100
       |||||||||||   |||||||||||||||| ||||||||||||| ||||
seq2  -CTGCTGTGGCC--TCCCGCCCCCACTCAGC-TATCAGCTCTGAG-TTTT  87

seq1  ATCGCACAGGGCCTGGGACAGTGGAGACAGATGTGTCCCAGCTGTGCATT  150
      |||||||| ||||| ||||||| |||||||||||||||||||||||||||
seq2  ATCGCACA-GGCCT-GGACAGT-GAGACAGATGTGTCCCAGCTGTGCATT  134

seq1  CCCTCCCAGCGCCTGCTTTATAAGGAGATTGGCTGTGCAGCCTGGCTGGT  200
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  -CCTCCCAGCG-CTGCTTTATAAGGAGATTGGCTGTGCAGCCTGGCTGGT  182

seq1  CCATCAGTCCAGACTTCAGATTTCACTGGCGCGTTCAGGTGCCCTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCCAGACTTCAGATTTCACTGGCGCGTTCAGGTGCCCTGGGAT  232

seq1  TCCATTTCACCAGCATCCCGAACACATTTCTTGGTTACACCCACTCCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCACCAGCATCCCGAACACATTTCTTGGTTACACCCACTCCCCG  282

seq1  CAAGGGGAACCTTAAGACACAGAAAATATGGCTTAGCCAAAAGCCTCGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAACCTTAAGACACAGAAAATATGGCTTAGCCAAAAGCCTCGAC  332

seq1  TGTGGAAACCGCTTATAGCAGATTCACCAGGAAAGCCTGTCTCATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAACCGCTTATAGCAGATTCACCAGGAAAGCCTGTCTCATTTATA  382

seq1  GACAGTCCAGTCTCTGTTTGCCCAGAAACACAATACAGTCAACGGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCAGTCTCTGTTTGCCCAGAAACACAATACAGTCAACGGACAAG  432

seq1  GCCACAGAGCGATGTGGCAGACCGGCTCCTCCCATTTCTCCTAAGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGCGATGTGGCAGACCGGCTCCTCCCATTTCTCCTAAGATTCT  482

seq1  GTGAAAGTTGACTGGCACTTACTACCTCGAATTTAGATTTTGTTTTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTGACTGGCACTTACTACCTCGAATTTAGATTTTGTTTTTCAC  532

seq1  TTATAGGGTTTTTGGTTGCTGTGTATACTACTGATATGTAAAAGCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGTTTTTGGTTGCTGTGTATACTACTGATATGTAAAAGCTGTTT  582

seq1  TACTGTTTTTGGATTTAAAATGAGGACTAGGATGAAAATATGTGCCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTTGGATTTAAAATGAGGACTAGGATGAAAATATGTGCCATAA  632

seq1  ATATACACACAGTTTATTCTGGCATACTTTTCAAAGCAAGGAGCATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACAGTTTATTCTGGCATACTTTTCAAAGCAAGGAGCATATGG  682

seq1  ACTTTCTCATGCCACTAAAATGATGGGGTGAGGAGTTAGCATGCTGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCATGCCACTAAAATGATGGGGTGAGGAGTTAGCATGCTGGGCT  732

seq1  GGTTTTTATGGTTCAGGACACAATCTCTACAAATTATTATTATTATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTATGGTTCAGGACACAATCTCTACAAATTATTATTATTATTATT  782

seq1  ATTATTATTATTATTATTATTATTAATTATTGGGACAGGCATGCATTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTAATTATTGGGACAGGCATGCATTTGC  832

seq1  ATGTGTCATAGTATTCTTATGGAAGTCAGAGGACAGTCTGTGAGAGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATAGTATTCTTATGGAAGTCAGAGGACAGTCTGTGAGAGTCAG  882

seq1  TTCTCTCCTTCCACTATGTGGGAGCTAAGGAACCAATCTCAGAGAGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTTCCACTATGTGGGAGCTAAGGAACCAATCTCAGAGAGTCAG  932

seq1  GATTAGTGGCAGATTCTGTGGAGGTTTGGTCCATTGCTATGTACTGAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGGCAGATTCTGTGGAGGTTTGGTCCATTGCTATGTACTGAAAT  982

seq1  GCTCAATTCTGTACTGGCAGGTCTAAGCCTATGAGTGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTCTGTACTGGCAGGTCTAAGCCTATGAGTGAATTC  1024

seq1: chr19_53747490_53748643
seq2: B6Ng01-143C19.g_69_1209

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAAACAAAAATAAATTTAAAAAAACCCATCTTATTAATGACTTTACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAATAAATTTAAAAAAACCCATCTTATTAATGACTTTACTTTG  100

seq1  TTAATGGCTGAACAGTGAAATCGTTAAATTTCACTGCTATTAAAAAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTGAACAGTGAAATCGTTAAATTTCACTGCTATTAAAAAAGCA  150

seq1  ATGTTGCAAAGTGAAAATTCAAGTTGTATACATTTCAGTAAATTTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAAAGTGAAAATTCAAGTTGTATACATTTCAGTAAATTTTATTC  200

seq1  CAAATGTTTAAATAATATAAAAGACCACACAAGGAAAAGGTTCTTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTAAATAATATAAAAGACCACACAAGGAAAAGGTTCTTGCCTC  250

seq1  GCCCCAATTTGTAGAGGTGCTCACCGCTGATAATTACTTGCTTGTATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATTTGTAGAGGTGCTCACCGCTGATAATTACTTGCTTGTATAAT  300

seq1  TTCCCCAGAGATGTTCTATTTAGGACATTTAGTCATGACATAATTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGAGATGTTCTATTTAGGACATTTAGTCATGACATAATTCTCTT  350

seq1  GAGAGACTAGCACTTTCTTTCAGGAAATCTCTCCTGAGCCGGCAGAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTAGCACTTTCTTTCAGGAAATCTCTCCTGAGCCGGCAGAGACC  400

seq1  TCCCTGTAGAGAGCTGCGCAGTCAGGAGCAGGAACCTTCTTTCTACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAGAGAGCTGCGCAGTCAGGAGCAGGAACCTTCTTTCTACACAC  450

seq1  CGTTTCCCACTGCTCACTTGGCTGTGTCTAGCTTTTGCTATTATGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCACTGCTCACTTGGCTGTGTCTAGCTTTTGCTATTATGAACAA  500

seq1  TACTAGTCAATTCCCTTGAAAGTACAGCTGTGATTGGGGATATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTCAATTCCCTTGAAAGTACAGCTGTGATTGGGGATATATATATA  550

seq1  TATTCCTAGGAGAGAAACTGCCAAATCAGTTTTCTGTGTTGAAATCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGGAGAGAAACTGCCAAATCAGTTTTCTGTGTTGAAATCCAAA  600

seq1  AATACATATTTTTAGTTAGTATACAACACAATGGGTTTGACTACAGCG-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATACATATTTTTAGTTAGTATACAACACAATGGGTTTGACTACAGCGTT  650

seq1  TTTCATACTTGTCTATCTTCACCCCTTGCCCATACTCACCTCCTCACTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACTTGTCTATCTTCACCCCTTGCCCATACTCACCTCCTCACTGC  700

seq1  CCTTCCCTGTGCCTTCCGCTTCCTCCCCAACACCCTTGTTGCAATGTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGTGCCTTCCGCTTCCTCCCCAACACCCTTGTTGCAATGTTAA  750

seq1  TAGACAATTCCAGCTCCCATGCAGAAACTGCAGCAGTCTGCGCTTCTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTCCAGCTCCCATGCAGAAACTGCAGCAGTCTGCGCTTCTCCT  800

seq1  TGCAGCAGAGAAGGAGGTCTGTGTCTCCCAGCC-TCACCGGCTCTGAGAG  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCAGCAGAGAAGGAGGTCTGTGTCTCCCAGCCTTCACCGGCTCTGAGAG  850

seq1  CACCGAACTTTACCATCTAGAGGTGTACACACCGGGAAGGG-CGGCACAC  897
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  CACCGAACTTTACCATCTAGAGGTGTACACACCGGGAAGGGCCGCCACAC  900

seq1  CTGAAGTGATCCCTTCGGCAGAGGAATGATCACATCAGCCTGAAAGGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAAGTGATCCCTTCGGCAGAGGAATGATCACATCAGCCTGAAA-GTAG  949

seq1  GCGACCCTTTGAGTAGAGGACAGTGTTACAATGATACAGAACAGCGATAC  997
      |||||| ||||||||||||||| |||||||||||||||||| ||||||||
seq2  GCGACCTTTTGAGTAGAGGACATTGTTACAATGATACAGAAAAGCGATAC  999

seq1  AGTGTTACAGAAGAGCGATGCA-GTGTTACAGAAAAGGTGCTGAGCCCCA  1046
      ||||||| |||  | ||||||| || ||||||||||||||||||| ||||
seq2  AGTGTTA-AGA--AACGATGCATGTTTTACAGAAAAGGTGCTGAG-CCCA  1045

seq1  GCTC-TGCAGTTCAGTATCCCAGCGACCTTGACCTTGGACACGTTCTTCA  1095
      |||| ||||||||||  | | ||||||||||| ||||||||||||| |||
seq2  GCTCTTGCAGTTCAG--TTCAAGCGACCTTGAACTTGGACACGTTC-TCA  1092

seq1  GGCTTCTCTGTCTGCATTAAATAAACAGGTATGAGAACACAGAGCCTGAA  1145
      |    |||| | | | ||||||||||  |  ||   | |||||||||| |
seq2  G----CTCTCTGTTCCTTAAATAAAC--GATTG---AAACAGAGCCTG-A  1132

seq1  AGCCAGTAA  1154
      |||||||||
seq2  AGCCAGTAA  1141