BAC Information

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BAC

Clone NameB6Ng01-143D08
Chromosome19 (Build37)
Map Location 27,733,662 - 27,894,376
singlet/doubletdoublet
Overlap geneLOC100042612, Rfx3
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC666997, LOC433235, Glis3, EG434460, EG627788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D08.bB6Ng01-143D08.g
ACCDH941206DH941207
length1,090927
definitionDH941206|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D08, 5' end.DH941207|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,893,253 - 27,894,376)(27,733,662 - 27,734,599)
sequence
gaattcagacttgcctctttcagcattacctcctcagcacctcctgagca
cattcgctaaagaatgagcggtccacatcagtcactcgcagttgagacaa
cagccacatgtgaactttgtttaattttcttgcatcactgcaaatgtaaa
ctagtaaatagccaaatattctgagttactaagaagaatacaaatgaaat
tctacccttagtcagcaaggttgatattatgagtcactttgatatttaat
atgatatcgcagactcacttactattcataagtaatggaccttctcaggg
tactattttcttctgattcatctgtgttatgtcacttggctcatttccaa
tatcaatttagggcgctaaagagaattacaagacaccagtaaagtagaaa
attctagcctcttgttattaataagtgagcatttttatttgtttatgcaa
attagttttgtactttcatgaatcataagtacaaatactacctgcctata
tagttgtcttgcctttcacttgggcattttccagctgctttgaaagaaat
cttccagatgttttgtttggtgtgttgaagactctttccagtaatggtga
ctatgtaatgctttttgccttccactggacttctgcagtgtctgcttgtg
agattattgacagaatactgtttctacaggagaacacagctgttcaagtt
ctaaataacagctacagctaacctcatggtgagagattcctaacagtctt
ccagattttcttgttagtgacaggtttcaaatgtacactcagttattaag
acatcagagtgtctttcatttcttaatcattaacagtgttcactctgatt
tcccatggagttgcaagctgttaaaatgatcatttgctccttgctaattt
gaaaccaagagcttatgcctcctttaataaaattcaggtctctctatgac
atgcatactcacagctctaggcccgtgacagaacttacctagagatattt
gggagtaatgagtacatgaggttagtctcatactgagagtcattattcca
gatgatacacagttggtggtagtgggtttcagtctcctac
gaattcttcccccagagctcagaaaactccctacaattgtaaataatcca
atcttatcccagatgaagtttactctgtctagaacacaggataggctatt
ttagagccctgtcactgtgagcattgttttacattgttgagtgttgtaaa
ccctgggaagtacactggtttagatttttctttcccttaaagattttaga
atcacattttttttcctgataggaagagggaggagaaacaagatgaagag
gaggaggaggaggacgaggacgaggaggaggaggacaaggaggaggacga
ggaggaggacttacatgctttggttttgaaaaacctaggaatctaaagga
ggatccttgccatctttgaagctggcagaccaaccaagttgaagttgtcg
atgggccatggtgggaaaaccaaggtatagagaggaaacatcttggtatt
tgcacatagaaagcagacaaggatccatttttttttttttttttttgagt
ttgcttaagactgtttctattggatacttttcaaagcagatgttgtcagt
catggggaatgtaactgcccattgaacaccctaacacactagttgtgaaa
ttaactcttctgcaagttcttgacttgacctttataaacttatgaagcag
gagccaattaaacagtatagagtctctgctaaaaaataatcacctgggct
aaggagtaattgattgcagccatagtctagtctaatggaattagatacct
agaggtccagctgtcaattaactctagtccttctggggtaaaaaaccatt
tatcgaatctttttctctacacttagaaggtatgatctaaaatggcatct
taaaatcaagttaagagcttagatgtagctcagtgacaggttgcttctaa
cccacagagtctttggagttcagtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27893253_27894376
seq2: B6Ng01-143D08.b_48_1137 (reverse)

seq1  GTAGGAGAAACTGAAAACACACTACCACCAAACCTGTGTATCAAATCCTG  50
      |||||||  |||| |||| ||||||||||||  ||||||||||     | 
seq2  GTAGGAG--ACTG-AAACCCACTACCACCAA--CTGTGTATCA-----TC  40

seq1  TGAAAATAATGGACTCTTCAGTATTGAGAACTATACCCTCCATGTACTTC  100
      ||  |||||| ||||| |||||| |||||    || ||| ||||||||  
seq2  TG-GAATAAT-GACTC-TCAGTA-TGAGA---CTAACCT-CATGTACT--  80

seq1  CATTTACTTCCCAAATTATCTCTAGGTTAAGTTTTCCTGTCACGGGCCCT  150
      || |||| ||||||| |||||||||| ||||||   ||||||||||||  
seq2  CA-TTAC-TCCCAAA-TATCTCTAGG-TAAGTT---CTGTCACGGGCC--  121

seq1  TAGAGCTGTTGAGTTATGCATGTTCATAGGAGAGACCTGAATTTTATTAA  200
      |||||||| |||| |||||||| ||||| |||||||||||||||||||||
seq2  TAGAGCTG-TGAG-TATGCATG-TCATA-GAGAGACCTGAATTTTATTAA  167

seq1  AGGAGGCATAAGCTCTTGGTTTCAAAATTAGCAAGGAGCAAATGATCATT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAGGCATAAGCTCTTGGTTTC-AAATTAGCAAGGAGCAAATGATCATT  216

seq1  TTAACAGCTTGCAACTCCATGGGAAATCAGAGTGAACACTGTTAATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTTGCAACTCCATGGGAAATCAGAGTGAACACTGTTAATGATT  266

seq1  AAGAAATGAAAGACACTCTGATGTCTTAATAACTGAGTGTACATTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAAGACACTCTGATGTCTTAATAACTGAGTGTACATTTGAAA  316

seq1  CCTGTCACTAACAAGAAAATCTGGAAGACTGTTAGGAATCTCTCACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTAACAAGAAAATCTGGAAGACTGTTAGGAATCTCTCACCATG  366

seq1  AGGTTAGCTGTAGCTGTTATTTAGAACTTGAACAGCTGTGTTCTCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCTGTAGCTGTTATTTAGAACTTGAACAGCTGTGTTCTCCTGTA  416

seq1  GAAACAGTATTCTGTCAATAATCTCACAAGCAGACACTGCAGAAGTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTATTCTGTCAATAATCTCACAAGCAGACACTGCAGAAGTCCAG  466

seq1  TGGAAGGCAAAAAGCATTACATAGTCACCATTACTGGAAAGAGTCTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCAAAAAGCATTACATAGTCACCATTACTGGAAAGAGTCTTCAA  516

seq1  CACACCAAACAAAACATCTGGAAGATTTCTTTCAAAGCAGCTGGAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAACAAAACATCTGGAAGATTTCTTTCAAAGCAGCTGGAAAATG  566

seq1  CCCAAGTGAAAGGCAAGACAACTATATAGGCAGGTAGTATTTGTACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGAAAGGCAAGACAACTATATAGGCAGGTAGTATTTGTACTTAT  616

seq1  GATTCATGAAAGTACAAAACTAATTTGCATAAACAAATAAAAATGCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGAAAGTACAAAACTAATTTGCATAAACAAATAAAAATGCTCAC  666

seq1  TTATTAATAACAAGAGGCTAGAATTTTCTACTTTACTGGTGTCTTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAACAAGAGGCTAGAATTTTCTACTTTACTGGTGTCTTGTAAT  716

seq1  TCTCTTTAGCGCCCTAAATTGATATTGGAAATGAGCCAAGTGACATAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAGCGCCCTAAATTGATATTGGAAATGAGCCAAGTGACATAACA  766

seq1  CAGATGAATCAGAAGAAAATAGTACCCTGAGAAGGTCCATTACTTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAATCAGAAGAAAATAGTACCCTGAGAAGGTCCATTACTTATGAA  816

seq1  TAGTAAGTGAGTCTGCGATATCATATTAAATATCAAAGTGACTCATAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTGAGTCTGCGATATCATATTAAATATCAAAGTGACTCATAATA  866

seq1  TCAACCTTGCTGACTAAGGGTAGAATTTCATTTGTATTCTTCTTAGTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTGCTGACTAAGGGTAGAATTTCATTTGTATTCTTCTTAGTAAC  916

seq1  TCAGAATATTTGGCTATTTACTAGTTTACATTTGCAGTGATGCAAGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATTTGGCTATTTACTAGTTTACATTTGCAGTGATGCAAGAAAA  966

seq1  TTAAACAAAGTTCACATGTGGCTGTTGTCTCAACTGCGAGTGACTGATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAGTTCACATGTGGCTGTTGTCTCAACTGCGAGTGACTGATGT  1016

seq1  GGACCGCTCATTCTTTAGCGAATGTGCTCAGGAGGTGCTGAGGAGGTAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGCTCATTCTTTAGCGAATGTGCTCAGGAGGTGCTGAGGAGGTAAT  1066

seq1  GCTGAAAGAGGCAAGTCTGAATTC  1124
      ||||||||||||||||||||||||
seq2  GCTGAAAGAGGCAAGTCTGAATTC  1090

seq1: chr19_27733662_27734599
seq2: B6Ng01-143D08.g_68_994

seq1  GAATTCTTCCCCCAGAGCTCAGAAAACTCCCTACAATTGTAAATAATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCCAGAGCTCAGAAAACTCCCTACAATTGTAAATAATCCA  50

seq1  ATCTTATCCCAGATGAAGTTTACTCTGTCTAGAACACAGGATAGGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCCCAGATGAAGTTTACTCTGTCTAGAACACAGGATAGGCTATT  100

seq1  TTAGAGCCCTGTCACTGTGAGCATTGTTTTACATTGTTGAGTGTTGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCTGTCACTGTGAGCATTGTTTTACATTGTTGAGTGTTGTAAA  150

seq1  CCCTGGGAAGTACACTGGTTTAGATTTTTCTTTCCCTTAAAGATTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGTACACTGGTTTAGATTTTTCTTTCCCTTAAAGATTTTAGA  200

seq1  ATCACATTTTTTTTCCTGATAGGAAGAGGGAGGAGAAACAAGATGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTTTTTTTCCTGATAGGAAGAGGGAGGAGAAACAAGATGAAGAG  250

seq1  GAGGAGGAGGAGGACGAGGACGAGGAGGAGGAGGACAAGGAGGAGGACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGAGGACGAGGACGAGGAGGAGGAGGACAAGGAGGAGGACGA  300

seq1  GGAGGAGGACTTACATGCTTTGGTTTTGAAAAACCTAGGAATCTAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGACTTACATGCTTTGGTTTTGAAAAACCTAGGAATCTAAAGGA  350

seq1  GGATCCTTGCCATCTTTGAAGCTGGCAGACCAACCAAGTTGAAGTTGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTGCCATCTTTGAAGCTGGCAGACCAACCAAGTTGAAGTTGTCG  400

seq1  ATGGGCCATGGTGGGAAAACCAAGGTATAGAGAGGAAACATCTTGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATGGTGGGAAAACCAAGGTATAGAGAGGAAACATCTTGGTATT  450

seq1  TGCACATAGAAAGCAGACAAGGATCCATTTTTTTTTTTTTTTTTTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAGAAAGCAGACAAGGATCCATTTTTTTTTTTTTTTTTTTGAGT  500

seq1  TTGCTTAAGACTGTTTCTATTGGATACTTTTCAAAGCAGATGTTGTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAGACTGTTTCTATTGGATACTTTTCAAAGCAGATGTTGTCAGT  550

seq1  CATGGGGAATGTAACTGCCCATTGAACACCCTAACACACTAGTTGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGAATGTAACTGCCCATTGAACACCCTAACACACTAGTTGTGAAA  600

seq1  TTAACTCTTCTGCAAGTTCTTGACTTGACCTTTATAAACTTATGAAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTCTGCAAGTTCTTGACTTGACCTTTATAAACTTATGAAGCAG  650

seq1  GAGCCAATTAAACAGTATAGAGTCTCTGCT-AAAAATAATCACCTGGGCT  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGCCAATTAAACAGTATAGAGTCTCTGCTAAAAAATAATCACCTGGGCT  700

seq1  AAGGAGTAATTGATTGCAGCCATAGTCTAGTCTAATGGTAATTAGATACC  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGAGTAATTGATTGCAGCCATAGTCTAGTCTAATGG-AATTAGATACC  749

seq1  TAGAGGTCCAGCTGTCAATTAACTCTAGTCCTTCCTGGTGGTAATAAAAC  799
      ||||||||||||||||||||||||||||||||| |||| ||||| |||||
seq2  TAGAGGTCCAGCTGTCAATTAACTCTAGTCCTT-CTGG-GGTAA-AAAAC  796

seq1  CATTTATCGTATCTTTTTCTCTACTACTTAAGAAGGTATGATCTAAAAAT  849
      ||||||||| |||||||||||||| |||| |||||||||||||| |||||
seq2  CATTTATCGAATCTTTTTCTCTAC-ACTT-AGAAGGTATGATCT-AAAAT  843

seq1  GGCATCTTTAAAATCAAGTTAAGGAGCTTAGAGTGTAGCTCAGTGACAGA  899
      |||||| ||||||||||||||| ||||||||| |||||||||||||||| 
seq2  GGCATC-TTAAAATCAAGTTAA-GAGCTTAGA-TGTAGCTCAGTGACAGG  890

seq1  GTGCTTCCTAGCACACAAGAGTCTTT-GAGTTCAAGTACT  938
       ||||| ||| | ||| ||||||||| |||||| ||||||
seq2  TTGCTT-CTAACCCAC-AGAGTCTTTGGAGTTC-AGTACT  927