BAC Information

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BAC

Clone NameB6Ng01-143L02
Chromosome19 (Build37)
Map Location 52,349,841 - 52,350,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
Downstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L02.g
ACCDH941563
length933
definitionDH941563|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttatcaacattgggactttgctttatgtatgttaaccaatagt
tgggcttaacactttcgaacatttgtatggctctaaccttgaataagttc
caataaaatgtttggttatttaatcatttattgaactatccctttgctgg
ttatttgcaagtaaataaaaataaaatccttctaaatttaataaatgtat
ttctatcttgattgcaaatgtggatgtctacctgcacatatattcaacat
acaacttccctggccataggtgatgaaaatagacaagccatacttactag
ttaatgtatacatggactattagcattgcataataggcattagagtgaac
aaattccaaagatgaaatgttggatggatggacaaggtattgatgaaaca
tctagcaagagacaaaatttgataagaagccatgacaagcaggattcatt
tgatattatcaagtgcaagtgacagaagctgaatgttgtgttcagtaggc
atcaagattgtactctggttatgggtcagtatcccacccgtgtgtaatga
tgactgttatggatggggaaagaacacagtgagatttatttgttactccc
tctctggagcgagcttgtgctccactgcactcttcatgagtggatcatga
actttctctgtgagagaaaatagtttaacttgctagaaagcagtgaactg
agtgagattagtgaatgatgctgattctcatgcacccgacatttacacag
ctctatataaatcctaggcaatggactttggttctagttgaattgtatca
tgagcaaagaagagtgctctgcagtttaccaaagtctatggtcaagagta
gtccagatccctctaatatttgtactcatattcgtattcggatacaagtc
gtatcgtatactgattcgtattcgtattcgtat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52349841_52350809
seq2: B6Ng01-143L02.g_65_997 (reverse)

seq1  ATACGAATACGAATACGAATACGAATAGAATACGAATACGAATACGAATA  50
                                   |||||||||||||||||||| 
seq2  -----------------------------ATACGAATACGAATACGAATC  21

seq1  CGAATACGAATACGAATACGAATACGAATACGAATATGAATACAAATATG  100
       | ||||| |||||| |  | || ||||||||||||||| ||||||||| 
seq2  AGTATACG-ATACGACT-TGTATCCGAATACGAATATGAGTACAAATAT-  68

seq1  TAGAAGGCTTTTGGACAACTCTTTGACCATAGACTTTGGTAAAATTGCAG  150
      ||| |||  | ||||| |||| |||||||||||||||||| ||| |||||
seq2  TAG-AGGGATCTGGACTACTC-TTGACCATAGACTTTGGT-AAACTGCAG  115

seq1  AGGACTCTTTCTTTGCTCTTGATACAATTCAACTAGAACCAAAGTCCATT  200
      || |||| |||||||||| |||||||||||||||||||||||||||||||
seq2  AGCACTC-TTCTTTGCTCATGATACAATTCAACTAGAACCAAAGTCCATT  164

seq1  GACTAGGATTTCTATAGAGCTGTGTAAATGTCGGCTGCATGAGAATCAGC  250
      | ||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  GCCTAGGATTTATATAGAGCTGTGTAAATGTCGGGTGCATGAGAATCAGC  214

seq1  ATCCTTCACTAATCTCACTCATTTCACTGCCTTATAGCAAGTTAAACTAT  300
      ||| ||||||||||||||||| |||||||| || ||||||||||||||||
seq2  ATCATTCACTAATCTCACTCAGTTCACTGCTTTCTAGCAAGTTAAACTAT  264

seq1  TTTCTCCCACAGAGAAAGTTCATGATCCACTCATGAAGAGTGCAGTGGAG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCACAGAGAAAGTTCATGATCCACTCATGAAGAGTGCAGTGGAG  314

seq1  CACAAGCTCGCTCCAGAGAGGGAGTAACAAATAAATCTCACTGTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTCGCTCCAGAGAGGGAGTAACAAATAAATCTCACTGTGTTCTT  364

seq1  TCCCCATCCATAACAGTCATCATTACACACGGGTGGGATACTGACCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCATAACAGTCATCATTACACACGGGTGGGATACTGACCCATA  414

seq1  ACCAGAGTACAATCTTGATGCCTACTGAACACAACATTCAGCTTCTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTACAATCTTGATGCCTACTGAACACAACATTCAGCTTCTGTCA  464

seq1  CTTGCACTTGATAATATCAAATGAATCCTGCTTGTCATGGCTTCTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTTGATAATATCAAATGAATCCTGCTTGTCATGGCTTCTTATCA  514

seq1  AATTTTGTCTCTTGCTAGATGTTTCATCAATACCTTGTCCATCCATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTCTTGCTAGATGTTTCATCAATACCTTGTCCATCCATCCAA  564

seq1  CATTTCATCTTTGGAATTTGTTCACTCTAATGCCTATTATGCAATGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATCTTTGGAATTTGTTCACTCTAATGCCTATTATGCAATGCTAA  614

seq1  TAGTCCATGTATACATTAACTAGTAAGTATGGCTTGTCTATTTTCATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATGTATACATTAACTAGTAAGTATGGCTTGTCTATTTTCATCAC  664

seq1  CTATGGCCAGGGAAGTTGTATGTTGAATATATGTGCAGGTAGACATCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCAGGGAAGTTGTATGTTGAATATATGTGCAGGTAGACATCCAC  714

seq1  ATTTGCAATCAAGATAGAAATACATTTATTAAATTTAGAAGGATTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATCAAGATAGAAATACATTTATTAAATTTAGAAGGATTTTATT  764

seq1  TTTATTTACTTGCAAATAACCAGCAAAGGGATAGTTCAATAAATGATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACTTGCAAATAACCAGCAAAGGGATAGTTCAATAAATGATTAA  814

seq1  ATAACCAAACATTTTATTGGAACTTATTCAAGGTTAGAGCTATACAAATG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATAACCAAACATTTTATTGGAACTTATTCAAGGTTAGAGCCATACAAATG  864

seq1  TTCGAAAGTGTTAAGCCCAACTATTGGTTAACATACATAAAGCAAAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAAGTGTTAAGCCCAACTATTGGTTAACATACATAAAGCAAAGTCC  914

seq1  CAATGTTGTTAAGGAATTC  969
      |||||||| ||||||||||
seq2  CAATGTTGATAAGGAATTC  933