BAC Information

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BAC

Clone NameB6Ng01-144P04
Chromosome19 (Build37)
Map Location 29,357,076 - 29,488,490
singlet/doubletdoublet
Overlap geneJak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238
Downstream geneC030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144P04.bB6Ng01-144P04.g
ACCDH942490DH942491
length9681,081
definitionDH942490|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P04, 5' end.DH942491|Mus musculus domesticus DNA, BAC clone: B6Ng01-144P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,487,523 - 29,488,490)(29,357,076 - 29,358,177)
sequence
gaattctgaagaagtaggccctaatgctagtgaagaaatagaattgctag
gaaaacttccttcttccatgtccttatataggttgccagtagaggtgaga
gcaagcaggcaaagagcaaaagctttcttcttcatgtcttgtataggctt
ctaatagaagagaaggcatggcccaggtttgatgagaattaaaatctgga
ttaaaggtgtgtcttcctacctcaaagatccagattagaagtagatcttc
ccacttcaaagtaagcaaaaatccctccattttaaggttttagttaacgc
cagatgggagtcaagttgacaaacaagaatggctactgcagccaggcact
atccagtgcactcagggctcagagaatcttcaagcattccaagccaatgg
aatgacttgcagatggagacagaagagaagacactcagaagcatcagaca
aggaagagagtctgttgatgaaaagagctcaggtaataaaggtaagtaga
gcaagttttccattgcaagagcaatgttcattgttaatgggccctcatac
ttggaaggggagaaaatggagcagaaagatcacaaaagccagatgaccag
ggtgtttgctgtgagactgtatttcctagtaatgtcagaatttacaccca
taaagtctcagtagcataactgccaaaatgtgagctgaagaaagacaata
acaagagacaaaggagaaaggagaaaaccctcagggcttcatccctacac
catgaactatacgcaactacggaaagctgggactgtgccaactggttatc
caataccaaatggccagctcggaaaacgtacacatgagtaaaactataca
cacacacagcacgttgtatttagaaatatatataaccatagctaatgaaa
aaatgcctcaaatttgaaagagagcgaggcagaagatgtacaggattttg
gggaaggggggggggaaa
gaattcagtggtcaagagggaaacataaggaaagtgagacactgacagaa
caggtaatcctaatgatacattcttgctctttcttctttatgtagaatgc
ccataaaagcaaagtaaatgtggttatttgagtaaagtcttgccattctc
tgctggtagaagttttatttatgtaaaaatgtaactatagtttgtatcac
aatgttcttaaatgttttgttaatttttgtggcaaaataattagtaatga
ctttcttccagtttcagagaaagattgaattctttaagtaatttaaagtt
aacattgtttcctttactctttaacttctgaaatttaagtacaatcataa
gactaattgattttgataatataattaattctattatatttgcattggaa
cactgaaactgttcacatgtatcattcgtatatgatttcagcaatttagt
attatattaatttttaaaatagttaataattctctacttttctgacaatc
attctttttaatattaactgggttaagttctgtatcacactgtcatactt
taatgctctcactttttttagtatgtttttttttaagatttatttatttt
atatatgtaagtacactgtcactctattcagacacaccagaagagggcat
ctgatcccattacagatggttgtgagccaccatgtggttgctgggaattg
aactcaggacctctggaagaacaagcagccagtgctcttaatcgctgagc
cctctctccagcccctagtgctctcattttgaagtcaatacaagaaacat
aaacttcgtcttcaggttcaatatttaggagaagtaatctcatccgatgc
ctatacattgttgtcagtgtccctttagagaactttaagtggctatcagc
accttctaagcttcgttgatgtcactgtgccttcctaaatgtctgataca
ggacgtacagtatattgtgatttcctgatattattgatgtcagtatagca
gcaacaggaatgctcaaatgaaagtagattgtactgttcataacaagatg
gtaaggttggtaggttgtattatatagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29487523_29488490
seq2: B6Ng01-144P04.b_47_1014 (reverse)

seq1  -TTTCCCCCCCCCTTCCCCAAAATCCTGTACATCTTCTGCCTCGCTCTCT  49
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCCCCCCTTCCCCAAAATCCTGTACATCTTCTGCCTCGCTCTCT  50

seq1  TTCAAATTTGAGGCATTTTTTTCATTAGCTATGGTTATATATATTTCTAA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTGAGGCA-TTTTTTCATTAGCTATGGTTATATATATTTCTAA  99

seq1  ATACAACCTGCTGTGTGTGTGTATAGTTTTACTCATGTGTACGTTTTCCG  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACGTGCTGTGTGTGTGTATAGTTTTACTCATGTGTACGTTTTCCG  149

seq1  AGCTGGCCATTTGGTATTGGATAACCAGTTGGCACAGTCCCAGCTTTCCG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCATTTGGTATTGGATAACCAGTTGGCACAGTCCCAGCTTTCCG  199

seq1  TAGTTGCGTATAGTTCATGGTGTAGGGATGAAGCCCTGAGGGTTTTCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCGTATAGTTCATGGTGTAGGGATGAAGCCCTGAGGGTTTTCTCC  249

seq1  TTTCTCCTTTGTCTCTTGTTATTGTCTTTCTTCAGCTCACATTTTGGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTGTCTCTTGTTATTGTCTTTCTTCAGCTCACATTTTGGCAG  299

seq1  TTATGCTACTGAGACTTTATGGGTGTAAATTCTGACATTACTAGGAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTACTGAGACTTTATGGGTGTAAATTCTGACATTACTAGGAAATA  349

seq1  CAGTCTCACAGCAAACACCCTGGTCATCTGGCTTTTGTGATCTTTCTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCACAGCAAACACCCTGGTCATCTGGCTTTTGTGATCTTTCTGCT  399

seq1  CCATTTTCTCCCCTTCCAAGTATGAGGGCCCATTAACAATGAACATTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTCCCCTTCCAAGTATGAGGGCCCATTAACAATGAACATTGCT  449

seq1  CTTGCAATGGAAAACTTGCTCTACTTACCTTTATTACCTGAGCTCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATGGAAAACTTGCTCTACTTACCTTTATTACCTGAGCTCTTTTC  499

seq1  ATCAACAGACTCTCTTCCTTGTCTGATGCTTCTGAGTGTCTTCTCTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGACTCTCTTCCTTGTCTGATGCTTCTGAGTGTCTTCTCTTCTG  549

seq1  TCTCCATCTGCAAGTCATTCCATTGGCTTGGAATGCTTGAAGATTCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTGCAAGTCATTCCATTGGCTTGGAATGCTTGAAGATTCTCTG  599

seq1  AGCCCTGAGTGCACTGGATAGTGCCTGGCTGCAGTAGCCATTCTTGTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGTGCACTGGATAGTGCCTGGCTGCAGTAGCCATTCTTGTTTG  649

seq1  TCAACTTGACTCCCATCTGGCGTTAACTAAAACCTTAAAATGGAGGGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGACTCCCATCTGGCGTTAACTAAAACCTTAAAATGGAGGGATT  699

seq1  TTTGCTTACTTTGAAGTGGGAAGATCTACTTCTAATCTGGATCTTTGAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACTTTGAAGTGGGAAGATCTACTTCTAATCTGGATCTTTGAGG  749

seq1  TAGGAAGACACACCTTTAATCCAGATTTTAATTCTCATCAAACCTGGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACACACCTTTAATCCAGATTTTAATTCTCATCAAACCTGGGCC  799

seq1  ATGCCTTCTCTTCTATTAGAAGCCTATACAAGACATGAAGAAGAAAGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTCTTCTATTAGAAGCCTATACAAGACATGAAGAAGAAAGCTT  849

seq1  TTGCTCTTTGCCTGCTTGCTCTCACCTCTACTGGCAACCTATATAAGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTGCCTGCTTGCTCTCACCTCTACTGGCAACCTATATAAGGAC  899

seq1  ATGGAAGAAGGAAGTTTTCCTAGCAATTCTATTTCTTCACTAGCATTAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAGGAAGTTTTCCTAGCAATTCTATTTCTTCACTAGCATTAGG  949

seq1  GCCTACTTCTTCAGAATTC  968
      |||||||||||||||||||
seq2  GCCTACTTCTTCAGAATTC  968

seq1: chr19_29357076_29358177
seq2: B6Ng01-144P04.g_68_1148

seq1  GAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTCAAGAGGGAAACATAAGGAAAGTGAGACACTGACAGAA  50

seq1  CAGGTAATCCTAATGATACATTCTTGCTCTTTCTTCTTTATGTAGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATCCTAATGATACATTCTTGCTCTTTCTTCTTTATGTAGAATGC  100

seq1  CCATAAAAGCAAAGTAAATGTGGTTATTTGAGTAAAGTCTTGCCATTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGCAAAGTAAATGTGGTTATTTGAGTAAAGTCTTGCCATTCTC  150

seq1  TGCTGGTAGAAGTTTTATTTATGTAAAAATGTAACTATAGTTTGTATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAGAAGTTTTATTTATGTAAAAATGTAACTATAGTTTGTATCAC  200

seq1  AATGTTCTTAAATGTTTTGTTAATTTTTGTGGCAAAATAATTAGTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTAAATGTTTTGTTAATTTTTGTGGCAAAATAATTAGTAATGA  250

seq1  CTTTCTTCCAGTTTCAGAGAAAGATTGAATTCTTTAAGTAATTTAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCAGTTTCAGAGAAAGATTGAATTCTTTAAGTAATTTAAAGTT  300

seq1  AACATTGTTTCCTTTACTCTTTAACTTCTGAAATTTAAGTACAATCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTTTCCTTTACTCTTTAACTTCTGAAATTTAAGTACAATCATAA  350

seq1  GACTAATTGATTTTGATAATATAATTAATTCTATTATATTTGCATTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTGATTTTGATAATATAATTAATTCTATTATATTTGCATTGGAA  400

seq1  CACTGAAACTGTTCACATGTATCATTCGTATATGATTTCAGCAATTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACTGTTCACATGTATCATTCGTATATGATTTCAGCAATTTAGT  450

seq1  ATTATATTAATTTTTAAAATAGTTAATAATTCTCTACTTTTCTGACAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTAATTTTTAAAATAGTTAATAATTCTCTACTTTTCTGACAATC  500

seq1  ATTCTTTTTAATATTAACTGGGTTAAGTTCTGTATCACACTGTCATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAATATTAACTGGGTTAAGTTCTGTATCACACTGTCATACTT  550

seq1  TAATGCTCTCACTTTTTTTAGTATGTTTTTTTTTAAGATTTATTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTCTCACTTTTTTTAGTATGTTTTTTTTTAAGATTTATTTATTTT  600

seq1  ATATATGTAAGTACACTGTCACTCTATTCAGACACACCAGAAGAGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAAGTACACTGTCACTCTATTCAGACACACCAGAAGAGGGCAT  650

seq1  CTGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  700

seq1  AACTCAGGACCTCTGGAAGAACAAGCAGCCAGTGCTCTTAATCGCTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACCTCTGGAAGAACAAGCAGCCAGTGCTCTTAATCGCTGAGC  750

seq1  CCTCTCTCCAGCCCCTAGTGCTCTCATTTTGAAGTCAATACAAGAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCAGCCCCTAGTGCTCTCATTTTGAAGTCAATACAAGAAACAT  800

seq1  AAACTTCGTCTTCAGGTTCAATATTTAGGAGAAGTAATCTCATCCGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCGTCTTCAGGTTCAATATTTAGGAGAAGTAATCTCATCCGATGC  850

seq1  CTATACATTGTTGTCAGTGTCCCTTTAGAGAACTTTAAGTGGCTATCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATTGTTGTCAGTGTCCCTTTAGAGAACTTTAAGTGGCTATCAGC  900

seq1  ACCTTCTTAAGCTTCGTTTGATGTCACTGTGCCTTCCTAAATGTTCTTGA  950
      |||||| ||||||||| |||||||||||||||||||||||||||   |||
seq2  ACCTTC-TAAGCTTCG-TTGATGTCACTGTGCCTTCCTAAATGT--CTGA  946

seq1  TTACAGGACGTACAGTTATATTGTGATTTCCCTGATATTATTGATGTCAG  1000
       |||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  -TACAGGACGTACAG-TATATTGTGATTT-CCTGATATTATTGATGTCAG  993

seq1  TATTAAGCAAGCAAACCAGGAATGCTCAAATGAAAGTAGAATTGTAACTG  1050
      |||  ||| |||||  ||||||||||||||||||||||| ||||| ||||
seq2  TAT--AGC-AGCAA--CAGGAATGCTCAAATGAAAGTAG-ATTGT-ACTG  1036

seq1  TCCATAAACAAGATGGTAAAGTTTTGGTAAGTTTGTATTATACATTAGTA  1100
      | ||| ||||||||||||| |  ||||| || ||||||||||   |||||
seq2  TTCAT-AACAAGATGGTAAGG--TTGGT-AGGTTGTATTATA---TAGTA  1079

seq1  AT  1102
      ||
seq2  AT  1081