BAC Information

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BAC

Clone NameB6Ng01-145C12
Chromosome19 (Build37)
Map Location 11,160,219 - 11,161,393
singlet/doubletsinglet
Overlap genenone
Upstream geneFads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a
Downstream geneGm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145C12.bB6Ng01-145C12.g
ACCDH942641DH942642
length1,1461,176
definitionDH942641|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C12, 5' end.DH942642|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgagtcttccattagtgttctgcagccacagctacgtctccc
taactaccaataactcatagacacgaaatgctggaaaatactagagctta
tgtttcttctaatgatttattatatgaacttatatacatgagtatggacc
cctgctttggatatttaaatatgcattctattcaaaatctgcttctcaaa
ggacacgtggttcatatacctagtactgataggaccaatactcaaattat
atttggctttacgttttaagagatatgattcatactattactatgcatgg
atctgcttctaaagaatctttgctcctaaacttactttggattaaaccaa
ggctttgcagaacagtcacaggggaacataagagaaaaacagcccatctc
gaggactcacatgtgttacttaaacatccgaaagtttactcccaaatact
gcagtcattcttgaaggacagcagaaataaatattttaaaattagaaagt
tagacagagctctccaacttcagtctaataggatgaagggatggctacag
gaagaccagcagcttcaactaatccagacctcccagagactaagccacca
accaaagagcatacagggactgatccaaggtccccagaacatatttagca
gagggctgccttgtctggctttagtaggaaaagatgtgcctaatcctgca
gagacttgaggccccagggacaggagggatgcctggtgggaaagagggga
gcaccctctcagaggcaaaggggagaaagggcaacatccatgatgtaatt
aataaggtaatgtaaaaaacacaaggaaatataaaataacaaaccttcaa
ttaaataaataacatctaaaaaaagttagaaaagatctaattaaaatggc
atctatgcccaaagatttcttcatactacatatgcaaaggaaagaacttt
atttgtttacctctgaaatgataaatcagtttgacattttatttaaggtt
ctgatttctgagcaactataaactaaacagcatattcaatatgaaaattc
aagcgaagctgttataatatctatgtggtccatataaatgtccttagttg
ctttaattcatataaagccttgaggttcattgagtgccattaaaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagttgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaaa
catagaagtggatgctcacagtcggctattggatggatcacatggcccca
atgaaggagctagagaaagtaccaaagaagctaagggatctgcaactctt
atagtgaacaacattattgaactaaccagtacctcggagctcttgactct
agctgcatatgcatcaaagatgctagtcggcatcacttgcaagagaggtc
cttggaaccgctacctttatatgcccagttacaggatcccaggccataaa
aggggaattgggtgggttgaggatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11160219_11161393
seq2: B6Ng01-145C12.b_47_1192

seq1  GAATTCTCTGAGTCTTCCATTAGTGTTCTGCAGCCACAGCTACGTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTCTTCCATTAGTGTTCTGCAGCCACAGCTACGTCTCCC  50

seq1  TAACTACCAATAACTCATAGACACGAAATGCTGGAAAATACTAGAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACCAATAACTCATAGACACGAAATGCTGGAAAATACTAGAGCTTA  100

seq1  TGTTTCTTCTAATGATTTATTATATGAACTTATATACATGAGTATGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTAATGATTTATTATATGAACTTATATACATGAGTATGGACC  150

seq1  CCTGCTTTGGATATTTAAATATGCATTCTATTCAAAATCTGCTTCTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGGATATTTAAATATGCATTCTATTCAAAATCTGCTTCTCAAA  200

seq1  GGACACGTGGTTCATATACCTAGTACTGATAGGACCAATACTCAAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGTGGTTCATATACCTAGTACTGATAGGACCAATACTCAAATTAT  250

seq1  ATTTGGCTTTACGTTTTAAGAGATATGATTCATACTATTACTATGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTTACGTTTTAAGAGATATGATTCATACTATTACTATGCATGG  300

seq1  ATCTGCTTCTAAAGAATCTTTGCTCCTAAACTTACTTTGGATTAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTCTAAAGAATCTTTGCTCCTAAACTTACTTTGGATTAAACCAA  350

seq1  GGCTTTGCAGAACAGTCACAGGGGAACATAAGAGAAAAACAGCCCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCAGAACAGTCACAGGGGAACATAAGAGAAAAACAGCCCATCTC  400

seq1  GAGGACTCACATGTGTTACTTAAACATCCGAAAGTTTACTCCCAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCACATGTGTTACTTAAACATCCGAAAGTTTACTCCCAAATACT  450

seq1  GCAGTCATTCTTGAAGGACAGCAGAAATAAATATTTTAAAATTAGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATTCTTGAAGGACAGCAGAAATAAATATTTTAAAATTAGAAAGT  500

seq1  TAGACAGAGCTCTCCAACTTCAGTCTAATAGGATGAAGGGATGGCTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAGCTCTCCAACTTCAGTCTAATAGGATGAAGGGATGGCTACAG  550

seq1  GAAGACCAGCAGCTTCAACTAATCCAGACCTCCCAGAGACTAAGCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGCAGCTTCAACTAATCCAGACCTCCCAGAGACTAAGCCACCA  600

seq1  ACCAAAGAGCATACAGGGACTGATCCAAGGTCCCCAGAACATATTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAGCATACAGGGACTGATCCAAGGTCCCCAGAACATATTTAGCA  650

seq1  GAGGGCTGCCTTGTCTGGCTTTAGTAGGAAAAGATGTGCCTAATCCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTGCCTTGTCTGGCTTTAGTAGGAAAAGATGTGCCTAATCCTGCA  700

seq1  GAGACTTGAGGCCCCAGGGACAGGAGGGATGCCTGGTGGGAAAGAGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGAGGCCCCAGGGACAGGAGGGATGCCTGGTGGGAAAGAGGGGA  750

seq1  GCACCCTCTCAGAGGCAAAGGGGAGAAAGGGCAACATCCATGATGTAAAT  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCACCCTCTCAGAGGCAAAGGGGAGAAAGGGCAACATCCATGATGT-AAT  799

seq1  TAATAAGGTAATGTAAAAAAACACAAGGAAATATAAAAATAACAAAACCT  850
      |||||||||||||| ||||||||||||||||||| |||||||| ||||||
seq2  TAATAAGGTAATGT-AAAAAACACAAGGAAATAT-AAAATAAC-AAACCT  846

seq1  TCAATTAAATAAATAACATCTAAAAAAAAGTTAGAAAAAGAATCTAATTA  900
      ||||||||||||||||||||| ||||||||||||||||   |||||||| 
seq2  TCAATTAAATAAATAACATCT-AAAAAAAGTTAGAAAA--GATCTAATT-  892

seq1  AAAATGGCATCTATGCCCAAAGATTTCTCCATACTACATAATGCAAAAAG  950
      |||||||||||||||||||||||||||| |||||||||| ||||  ||||
seq2  AAAATGGCATCTATGCCCAAAGATTTCTTCATACTACAT-ATGC--AAAG  939

seq1  GAAAGAACTTTATTTGTTTACCTCTGAAATGATAAATCAGTTTTGACATT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAGAACTTTATTTGTTTACCTCTGAAATGATAAATCAG-TTTGACATT  988

seq1  TTATTTAAGGGTTCTGATTTTCTGAGCAACATATAAAAACTAAAACAGCA  1050
      |||||||| |||||||| ||||||||||||   || ||||| ||||||||
seq2  TTATTTAA-GGTTCTGA-TTTCTGAGCAAC---TATAAACT-AAACAGCA  1032

seq1  TATTCAAAATATGAAAAATTCAAAGCGAAGCTGTTATAATACTAATGTGT  1100
      |||||  |||||| ||||||| |||||||||||||||||||   ||||| 
seq2  TATTC--AATATG-AAAATTC-AAGCGAAGCTGTTATAATATCTATGTGG  1078

seq1  TCAAATATAAAAATGTCTTTAAGTTGCTTTAAATCATATAAAAACCCTTG  1150
      ||    ||| ||||||| || ||||||||||| ||||||  ||| |||||
seq2  TC---CATATAAATGTCCTT-AGTTGCTTTAATTCATAT--AAAGCCTTG  1122

seq1  ATGTATCATTGA-TGCACATTAAAAA  1175
      | || ||||||| ||| |||||||||
seq2  AGGT-TCATTGAGTGC-CATTAAAAA  1146