BAC Information

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BAC

Clone NameB6Ng01-145E13
Chromosome19 (Build37)
Map Location 59,624,195 - 59,765,531
singlet/doubletdoublet
Overlap genenone
Upstream gene1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
Downstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145E13.bB6Ng01-145E13.g
ACCDH942729DH942730
length4681,031
definitionDH942729|Mus musculus domesticus DNA, BAC clone: B6Ng01-145E13, 5' end.DH942730|Mus musculus domesticus DNA, BAC clone: B6Ng01-145E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,624,195 - 59,624,668)(59,764,493 - 59,765,531)
sequence
tccatggatgccactagagaaggtagaaatgataaatctgtgtccagaag
gacacctgaatttctatttctggggctgagagtggagctgggtgattcaa
ccccaggaaatctgtgctttgtcaccagggtggggtgacttggttgggag
gaggacggggactgggcacttcagagggagggactccttgcgctgtcttg
agtcacagaatagagaactacatgctggtgtttgtctttcttcttcgtgg
tgtccacggagctgctctcctcctcagcctccactgttgcctgaatcaca
gtgacctttaactatacaggttgatggaaaggctgatgtgacccgtaatg
acctagcagctcccaggcactgagtacaatccaaggcaaggctcgtagct
tgccctcaagtagtaagagaagtagatcacacggcagggacgagagagag
agagagagagagagaggg
gaattcattgttgttgttgttgaaataaaaacatgaattttcaagtttgt
gtgggactttctgacaatctaagtttggagtatactttgagaatcaacct
aagaggaacctggagtgaagaggtcactcagtacaggccaagagagccca
cagggacagcttaagccctgttcctgtcactcatctttctcctcagggaa
ggaacacctggccagagcatctatggccaccccccagactttggatggca
acttggggctgatacctgtagttctaaatctacctcccacgtttggcagg
ccaagacctgtcctctctgtcacttggaggcaggtaaagtctttgtgttc
atttcctgtctcctgcagaacaaatgccatccataggtcaagaccttcat
gttagcagcttaatcaataaactggatgctttcaaaaaatacccagtgta
ctagaaatcataaagttggtgatatttacaaataacagatcttctgaaaa
tatgggcttctaaatctatgtttctacatctcctaaaataagtcacacct
gaccaaaccctctgtgctgtgtgaggatgggcaaccaccagccatgtggc
accaacaacctcagaaagacccagaagcaaattgggccccaactcgcact
gagattcagtacagggtgagctccaccctgaacctctggattctattcgg
accactcgagttatcttaggaggtacggggggagggacagtgctccttaa
aatcttcaaggtgccaagcaaaggaccagcacagagttgagactcaatgt
cctctctctgttcccccggattggctctacaggcagaatggggtctttat
atgtccatttagtgggaagagtagtccatctagacatacaccatccaaga
gatgctaaatgccaatttcgtggaacttgtgtctagggatttgacttttg
acagctgagtagtaagccccacgttccctgtcttgtctcttacaagtaga
gtgctatgagctctagcctctgttcttatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59624195_59624668
seq2: B6Ng01-145E13.b_46_519

seq1  GAATTCTCCATGGATGCCACTAGAGAAGGTAGAAATGATAAATCTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGGATGCCACTAGAGAAGGTAGAAATGATAAATCTGTGTC  50

seq1  CAGAAGGACACCTGAATTTCTATTTCTGGGGCTGAGAGTGGAGCTGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGACACCTGAATTTCTATTTCTGGGGCTGAGAGTGGAGCTGGGTG  100

seq1  ATTCAACCCCAGGAAATCTGTGCTTTGTCACCAGGGTGGGGTGACTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACCCCAGGAAATCTGTGCTTTGTCACCAGGGTGGGGTGACTTGGT  150

seq1  TGGGAGGAGGACGGGGACTGGGCACTTCAGAGGGAGGGACTCCTTGCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGGACGGGGACTGGGCACTTCAGAGGGAGGGACTCCTTGCGCT  200

seq1  GTCTTGAGTCACAGAATAGAGAACTACATGCTGGTGTTTGTCTTTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGTCACAGAATAGAGAACTACATGCTGGTGTTTGTCTTTCTTCT  250

seq1  TCGTGGTGTCCACGGAGCTGCTCTCCTCCTCAGCCTCCACTGTTGCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTGTCCACGGAGCTGCTCTCCTCCTCAGCCTCCACTGTTGCCTGA  300

seq1  ATCACAGTGACCTTTAACTATACAGGTTGATGGAAAGGCTGATGTGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTGACCTTTAACTATACAGGTTGATGGAAAGGCTGATGTGACCC  350

seq1  GTAATGACCTAGCAGCTCCCAGGCACTGAGTACAATCCAAGGCAAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGACCTAGCAGCTCCCAGGCACTGAGTACAATCCAAGGCAAGGCTC  400

seq1  GTAGCTTGCCCTCAAGTAGTAAGAGAAGTAGATCACACGGCAGGGACGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGCCCTCAAGTAGTAAGAGAAGTAGATCACACGGCAGGGACGAG  450

seq1  AGAGAGAGAGAGAGAGAGAGAGGG  474
      ||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGGG  474

seq1: chr19_59764493_59765531
seq2: B6Ng01-145E13.g_69_1099 (reverse)

seq1  CCATAAGAACAGGTGCTAGAGCTCATAGCAATTCTGACTTGTAAGAGACC  50
      ||||||||||||  ||||||||||||||| | ||| |||||||||||| |
seq2  CCATAAGAACAGAGGCTAGAGCTCATAGC-ACTCT-ACTTGTAAGAGA-C  47

seq1  AAGACAGGGAACGTGGGGCTTACTACTCAGCTGTCAAAAGTCAAAATCCC  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGACAGGGAACGTGGGGCTTACTACTCAGCTGTCAAAAGTC-AAATCCC  96

seq1  TAGACACAAGTTCCACGAAATTGGCATTTAGCATTCTCTTGGATGGTGTA  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGACACAAGTTCCACGAAATTGGCATTTAGCA-TCTCTTGGATGGTGTA  145

seq1  TTGTCTAGATGGACTACTCTTCCCACTTAAATGGACATATAAAGACCCCA  200
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -TGTCTAGATGGACTACTCTTCCCAC-TAAATGGACATATAAAGACCCCA  193

seq1  TTCTGCCTGTAGAGCCAATTCCGGGGGAACAGAGAGAGGACATTGAGTCT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGCCTGTAGAGCCAA-TCCGGGGGAACAGAGAGAGGACATTGAGTCT  242

seq1  CAACTCTGTGCTGGTCCTTTGCTTGGCACCTTGAAGATTTTAAGGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGTGCTGGTCCTTTGCTTGGCACCTTGAAGATTTTAAGGAGCAC  292

seq1  TGTCCCTCCCCCCGTACCTCCTAAGATAACTCGAGTGGTCCGAATAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCCCCCCGTACCTCCTAAGATAACTCGAGTGGTCCGAATAGAAT  342

seq1  CCAGAGGTTCAGGGTGGAGCTCACCCTGTACTGAATCTCAGTGCGAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTCAGGGTGGAGCTCACCCTGTACTGAATCTCAGTGCGAGTTG  392

seq1  GGGCCCAATTTGCTTCTGGGTCTTTCTGAGGTTGTTGGTGCCACATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAATTTGCTTCTGGGTCTTTCTGAGGTTGTTGGTGCCACATGGCT  442

seq1  GGTGGTTGCCCATCCTCACACAGCACAGAGGGTTTGGTCAGGTGTGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGCCCATCCTCACACAGCACAGAGGGTTTGGTCAGGTGTGACTT  492

seq1  ATTTTAGGAGATGTAGAAACATAGATTTAGAAGCCCATATTTTCAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGAGATGTAGAAACATAGATTTAGAAGCCCATATTTTCAGAAGA  542

seq1  TCTGTTATTTGTAAATATCACCAACTTTATGATTTCTAGTACACTGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTTGTAAATATCACCAACTTTATGATTTCTAGTACACTGGGTA  592

seq1  TTTTTTGAAAGCATCCAGTTTATTGATTAAGCTGCTAACATGAAGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAAGCATCCAGTTTATTGATTAAGCTGCTAACATGAAGGTCTT  642

seq1  GACCTATGGATGGCATTTGTTCTGCAGGAGACAGGAAATGAACACAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGGATGGCATTTGTTCTGCAGGAGACAGGAAATGAACACAAAGA  692

seq1  CTTTACCTGCCTCCAAGTGACAGAGAGGACAGGTCTTGGCCTGCCAAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTGCCTCCAAGTGACAGAGAGGACAGGTCTTGGCCTGCCAAACG  742

seq1  TGGGAGGTAGATTTAGAACTACAGGTATCAGCCCCAAGTTGCCATCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTAGATTTAGAACTACAGGTATCAGCCCCAAGTTGCCATCCAAA  792

seq1  GTCTGGGGGGTGGCCATAGATGCTCTGGCCAGGTGTTCCTTCCCTGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGGGTGGCCATAGATGCTCTGGCCAGGTGTTCCTTCCCTGAGGA  842

seq1  GAAAGATGAGTGACAGGAACAGGGCTTAAGCTGTCCCTGTGGGCTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAGTGACAGGAACAGGGCTTAAGCTGTCCCTGTGGGCTCTCTT  892

seq1  GGCCTGTACTGAGTGACCTCTTCACTCCAGGTTCCTCTTAGGTTGATTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTACTGAGTGACCTCTTCACTCCAGGTTCCTCTTAGGTTGATTCT  942

seq1  CAAAGTATACTCCAAACTTAGATTGTCAGAAAGTCCCACACAAACTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATACTCCAAACTTAGATTGTCAGAAAGTCCCACACAAACTTGAA  992

seq1  AATTCATGTTTTTATTTCAACAACAACAACAATGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTTTTTATTTCAACAACAACAACAATGAATTC  1031