BAC Information

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BAC

Clone NameB6Ng01-145F24
Chromosome19 (Build37)
Map Location 17,824,571 - 17,965,038
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145F24.bB6Ng01-145F24.g
ACCDH942795DH942796
length914754
definitionDH942795|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F24, 5' end.DH942796|Mus musculus domesticus DNA, BAC clone: B6Ng01-145F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,824,571 - 17,825,487)(17,964,285 - 17,965,038)
sequence
gaattccatgacgctgaagtggtagctctcatcttccccagtgctcattc
tctctcactagaacagtgagaagaagagggagtgtggtgtcctactctta
tccagggaggcaagcaaaggtagcagtgtgtctttcctgggagaggaagt
gtgacaaggcagagacaatcccctcacctggctttataaacactcagtca
tatggaggcacttttccctttccacctcgtttctaaagttcttaaataca
ctccagtgttatcagaacagacaaagccccatagctcctgcgaacactca
ttctgacatccctcctctgtggttcatcccttctctctcagatctagcaa
gctgccatgtgtctctgtcccctcagatgacccttgtaaaatcactactt
gattcctggtccctttgacgttcacatgggggggggggatcctttctttt
ctctttaagcataacagagctctaatgtaagattctgctgggattctaaa
tatttctacaaccttctgtctctagataagtccaagaaaatgagtgtcgg
gagccataccagtcacatttctccacctccaaacaagcatgaatctccag
cactgcaacagcccgagttcttaaaaggatacaaatcaagatccaagtgt
agtgcctgcacttagctaaccctcagtacaacagaacaatcttatcatca
acattaaaggccagagtgcaaaatggctggtgaagcgtcccacaattgtg
gtggtttgaatgatagataatcccctttagtttgtgtatttgaacacaag
gttccagttggtggcgctgtttggggtatgtaatgggtcctttaggaggt
acagcctggctaagggaggtgccactgggagactttgaaagcttaattca
ttcaccctctgctg
gaattcatccttcagctattttcaaataagagctgggaattttagagaat
tgtttaacctgaggtcatataagcaaaaggcattctaatttcttggacaa
ttggttttcacatctcctttgtttcttcatggattatatataacatttca
cccagtttttgcttatgttagaagacagtcttaagtgattgacatgtaca
aaattgcctgtgggcttctgatgtttatcatttacccatgttaaaactat
atctcatgatgctgtctctcaaccatccattcatccatacatccatacat
ccatccagcaaactcataattgtccagtagattcaaaccaaatgccaatg
aaacatgatgtttccttgaagatgaagatttggtcatgatctttcttttc
ttttctcttcttttctcttcttttctcttcttttcttctcttctcttctc
ttctcttctcttctcttttctcttcttttcttttcttcttcttttttttt
ttttaagacagggttcctctgtgtagccatggctgttctggaactcactt
tgtagaccaggctggccttgaaatcagaaatctgcctgcctctgtctccc
aagtgttgggattaaagacgtgagccaccaccacctggcactttcgctct
ctctctctctctctctctctctctctctctctctctctctctttatgggc
tagtttctttattattttggaaatgttatcgcctttccagtatcctctct
gaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17824571_17825487
seq2: B6Ng01-145F24.b_45_957

seq1  GAATTCCATGACGCTGAAGTGGTAGCTCTCATCTTCCCCAGTGCTCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACGCTGAAGTGGTAGCTCTCATCTTCCCCAGTGCTCATTC  50

seq1  TCTCTCACTAGAACAGTGAGAAGAAGAGGGAGTGTGGTGTCCTACTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTAGAACAGTGAGAAGAAGAGGGAGTGTGGTGTCCTACTCTTA  100

seq1  TCCAGGGAGGCAAGCAAAGGTAGCAGTGTGTCTTTCCTGGGAGAGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAGGCAAGCAAAGGTAGCAGTGTGTCTTTCCTGGGAGAGGAAGT  150

seq1  GTGACAAGGCAGAGACAATCCCCTCACCTGGCTTTATAAACACTCAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGGCAGAGACAATCCCCTCACCTGGCTTTATAAACACTCAGTCA  200

seq1  TATGGAGGCACTTTTCCCTTTCCACCTCGTTTCTAAAGTTCTTAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCACTTTTCCCTTTCCACCTCGTTTCTAAAGTTCTTAAATACA  250

seq1  CTCCAGTGTTATCAGAACAGACAAAGCCCCATAGCTCCTGCGAACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGTTATCAGAACAGACAAAGCCCCATAGCTCCTGCGAACACTCA  300

seq1  TTCTGACATCCCTCCTCTGTGGTTCATCCCTTCTCTCTCAGATCTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACATCCCTCCTCTGTGGTTCATCCCTTCTCTCTCAGATCTAGCAA  350

seq1  GCTGCCATGTGTCTCTGTCCCCTCAGATGACCCTTGTAAAATCACTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGTGTCTCTGTCCCCTCAGATGACCCTTGTAAAATCACTACTT  400

seq1  GATTCCTGGTCCCTTTGACGTTCACATGGGGGGGGGGGATCCTTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGGTCCCTTTGACGTTCACATGGGGGGGGGGGATCCTTTCTTTT  450

seq1  CTCTTTAAGCATAACAGAGCTCTAATGTAAGATTCTGCTGGGATTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAGCATAACAGAGCTCTAATGTAAGATTCTGCTGGGATTCTAAA  500

seq1  TATTTCTACAACCTTCTGTCTCTAGATAAGTCCAAGAAAATGAGTGTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACAACCTTCTGTCTCTAGATAAGTCCAAGAAAATGAGTGTCGG  550

seq1  GAGCCATACCAGTCACATTTCTCCACCTCCAAACAAGCATGAATCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATACCAGTCACATTTCTCCACCTCCAAACAAGCATGAATCTCCAG  600

seq1  CACTGCAACAGCCCGAGTTCTTAAAAGGATACAAATCAAGATCCAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAACAGCCCGAGTTCTTAAAAGGATACAAATCAAGATCCAAGTGT  650

seq1  AGTGCCTGCACTTAGCTAACCCTCAGTACAACAGAACAATCTTATCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCACTTAGCTAACCCTCAGTACAACAGAACAATCTTATCATCA  700

seq1  ACATTAAAGGCCAGAGTGCAAAATGGCTGGTGAAGCGTCCCACAATTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAGGCCAGAGTGCAAAATGGCTGGTGAAGCGTCCCACAATTGTG  750

seq1  GTGGTTTGAATGATAGATAATCCCCTTAGGTTTGTGTATTTGAACACAAG  800
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GTGGTTTGAATGATAGATAATCCCCTTTAGTTTGTGTATTTGAACACAAG  800

seq1  GTTCCAGTTGGTGGCGCTGTTTGGGGTATGTTATGGGTCCTTTAGGAGGT  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTCCAGTTGGTGGCGCTGTTTGGGGTATGTAATGGGTCCTTTAGGAGGT  850

seq1  ACAGCCTGGCTAAAGGGAGGGTGCCACTGGGAGACTTTTGAAAGCTTAGT  900
      ||||||||||| |||||| |||||||||||||||| ||||||||||||  
seq2  ACAGCCTGGCT-AAGGGA-GGTGCCACTGGGAGAC-TTTGAAAGCTTA-A  896

seq1  TTCATTCACCCTCTGCT  917
      |||||||||||||||||
seq2  TTCATTCACCCTCTGCT  913

seq1: chr19_17964285_17965038
seq2: B6Ng01-145F24.g_67_820 (reverse)

seq1  TTTCAGAGAGGATACCTGGAAAGGCGATAACATTTCCAATGTAAATAAAG  50
      |||||||||||||| ||||||||||||||||||||||||  | |||||||
seq2  TTTCAGAGAGGATA-CTGGAAAGGCGATAACATTTCCAAAAT-AATAAAG  48

seq1  AAAATAGCCAATAA--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  98
      ||| ||||| ||||  ||||||||||||||||||||||||||||||||||
seq2  AAACTAGCCCATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  98

seq1  AGAGAGAGAGCGAAAGTGCCAGGTGGTGGTGGCTCACGTCTTTAATCCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGCGAAAGTGCCAGGTGGTGGTGGCTCACGTCTTTAATCCCA  148

seq1  ACACTTGGGAGACAGAGGCAGGCAGATTTCTGATTTCAAGGCCAGCCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGGAGACAGAGGCAGGCAGATTTCTGATTTCAAGGCCAGCCTGG  198

seq1  TCTACAAAGTGAGTTCCAGAACAGCCATGGCTACACAGAGGAACCCTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGAACAGCCATGGCTACACAGAGGAACCCTGTC  248

seq1  TTAAAAAAAAAAAAAGAAGAAGAAAAGAAAAGAAGAGAAAAGAGAAGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAGAAGAAGAAAAGAAAAGAAGAGAAAAGAGAAGAGA  298

seq1  AGAGAAGAGAAGAGAAGAGAAGAAAAGAAGAGAAAAGAAGAGAAAAGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGAAGAGAAGAGAAGAAAAGAAGAGAAAAGAAGAGAAAAGAAG  348

seq1  AGAAAAGAAAAGAAAGATCATGACCAAATCTTCATCTTCAAGGAAACATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAGATCATGACCAAATCTTCATCTTCAAGGAAACATC  398

seq1  ATGTTTCATTGGCATTTGGTTTGAATCTACTGGACAATTATGAGTTTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATTGGCATTTGGTTTGAATCTACTGGACAATTATGAGTTTGCT  448

seq1  GGATGGATGTATGGATGTATGGATGAATGGATGGTTGAGAGACAGCATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGTATGGATGTATGGATGAATGGATGGTTGAGAGACAGCATCA  498

seq1  TGAGATATAGTTTTAACATGGGTAAATGATAAACATCAGAAGCCCACAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATATAGTTTTAACATGGGTAAATGATAAACATCAGAAGCCCACAGG  548

seq1  CAATTTTGTACATGTCAATCACTTAAGACTGTCTTCTAACATAAGCAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTACATGTCAATCACTTAAGACTGTCTTCTAACATAAGCAAAA  598

seq1  ACTGGGTGAAATGTTATATATAATCCATGAAGAAACAAAGGAGATGTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGAAATGTTATATATAATCCATGAAGAAACAAAGGAGATGTGAA  648

seq1  AACCAATTGTCCAAGAAATTAGAATGCCTTTTGCTTATATGACCTCAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTGTCCAAGAAATTAGAATGCCTTTTGCTTATATGACCTCAGGT  698

seq1  TAAACAATTCTCTAAAATTCCCAGCTCTTATTTGAAAATAGCTGAAGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATTCTCTAAAATTCCCAGCTCTTATTTGAAAATAGCTGAAGGAT  748

seq1  GAATTC  754
      ||||||
seq2  GAATTC  754