BAC Information

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BAC

Clone NameB6Ng01-145M11
Chromosome19 (Build37)
Map Location 4,321,101 - 4,322,127
singlet/doubletsinglet
Overlap geneFbxl11
Upstream geneLOC665826, Cpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M11.bB6Ng01-145M11.g
ACCDH943092DH943093
length6431,016
definitionDH943092|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M11, 5' end.DH943093|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtgtagaccaggctagcaaaccaggctaaccttaaactcac
agagatcctcctactcctgcctcccaatggtattaaagctctgtgccacc
atatctggcttagttacttttaaataaatgcctatttggctcattttgaa
agatagccaaagaagtccttaccttgctggtgacagagggagaagaagct
ggactctgagccccacctactgggctcaaatccctccatttccaattgag
tgaccaatgatacgttataaaatcctctatgtcttactgactgcatctat
aatggactcaactacagaatctgctgatagggtatgaaaatacacaggag
gcttgagagacggctccgaggttgagagcattggctgctcttctactggg
tttgactcccaacacccacatagcagctcacagatgcctgcaactccaat
cccagggcatcagaagcccactttgacctccaagggaaccaggcacagat
gctgcacagatatgcatgttgacaaaaggctcattacacatcgatcttgt
tttaaaaatagaaaattatagccaggcatggtgtcaaacactttgttgga
ggttttttgtttgtttgttttgggggttttgttttgttttgtt
gaattcaaatcctcagttaccagctgttctgagcaacacaaatgggtctc
tagtctactgggagagactatgttctaatctagtaaccaagtctaaagat
tttcatggtgtcaaggcatcaaagttataacgtttactttggtgttaaaa
ccaatagctggaacgccagatggcactgtcccacatctttaattccagca
ctcaggaggcagagacaggcagaaaacctagtctgtaaagtgagttccca
gacagacaaacacacaaacaaaacaaaaaatccaaatgctggaattgggt
gtgatggcacatattccattccagcattcagaaagaataggaaggctgat
ctttttgatttctaaagagttcaaggccacaaagtggccatttcaagaca
aagtacacatgcaggcacgtacaacaactgctgggcactttagggagata
gcttaagaaattaaaaaaaaaaaaaaaaaaaaaaagccggcgtggtggcg
catgcctttaatcccaacacttgggaggcagaggcaggtggatttctgag
ttcgaggccagcctgatctacaaagtgagttccaggacagccagagctat
acagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaagtatttacattc
attgaaaagaccagaattcatatccccagaaaccacataatgccaggtgg
acatggcatcctgccagtaattacagcactgaaaggaagagcaggggacc
tcaacaagctggacagcaagactagccacatcagatacaagctctgtggt
gtctgacagaccctgcctcaacttttaaagtagatgaatgacccaagggt
tcctaataatcacatatccatcaatgcacacttgcctacatcacactcat
gaaaaggatgaaataagacccaggcactaatttctgcacagcactagatg
ctgtgtagcttgtctttctggacttgaatgctgaggctacaagagctgat
ggaagcaaatctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4321101_4322127
seq2: B6Ng01-145M11.g_68_1083

seq1  GAATTCAAATCCTCAGTTACCAGCTGTTCTGAGCAACACAAATGGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCTCAGTTACCAGCTGTTCTGAGCAACACAAATGGGTCTC  50

seq1  TAGTCTACTGGGAGAGACTATGTTCTAATCTAGTAACCAAGTCTAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACTGGGAGAGACTATGTTCTAATCTAGTAACCAAGTCTAAAGAT  100

seq1  TTTCATGGTGTCAAGGCATCAAAGTTATAACGTTTACTTTGGTGTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTGTCAAGGCATCAAAGTTATAACGTTTACTTTGGTGTTAAAA  150

seq1  CCAATAGCTGGAACGCCAGATGGCACTGTCCCACATCTTTAATTCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGCTGGAACGCCAGATGGCACTGTCCCACATCTTTAATTCCAGCA  200

seq1  CTCAGGAGGCAGAGACAGGCAGAAAACCTAGTCTGTAAAGTGAGTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGAGACAGGCAGAAAACCTAGTCTGTAAAGTGAGTTCCCA  250

seq1  GACAGACAAACACACAAACAAAACAAAAAATCCAAATGCTGGAATTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAAACACACAAACAAAACAAAAAATCCAAATGCTGGAATTGGGT  300

seq1  GTGATGGCACATATTCCATTCCAGCATTCAGAAAGAATAGGAAGGCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCACATATTCCATTCCAGCATTCAGAAAGAATAGGAAGGCTGAT  350

seq1  CTTTTTGATTTCTAAAGAGTTCAAGGCCACAAAGTGGCCATTTCAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGATTTCTAAAGAGTTCAAGGCCACAAAGTGGCCATTTCAAGACA  400

seq1  AAGTACACATGCAGGCACGTACAACAACTGCTGGGCACTTTAGGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACATGCAGGCACGTACAACAACTGCTGGGCACTTTAGGGAGATA  450

seq1  GCTTAAGAAATTAAAAAAAAAAAAAAAAAAAAAAAGCCGGCGTGGTGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGAAATTAAAAAAAAAAAAAAAAAAAAAAAGCCGGCGTGGTGGCG  500

seq1  CATGCCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGTGGATTTCTGAG  550

seq1  TTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGAGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGAGCTAT  600

seq1  ACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAGTATTTACATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAGTATTTACATTC  650

seq1  ATTGAAAAGACCAGAATTCATATCCCCAGAAACCACATAATGCCAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGACCAGAATTCATATCCCCAGAAACCACATAATGCCAGGTGG  700

seq1  ACATGGCATCCTGCCAGTAATTACAGCACTGAAAGGAAGAGCAGGGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCATCCTGCCAGTAATTACAGCACTGAAAGGAAGAGCAGGGGACC  750

seq1  TCAACAAGCTGGACAGCAAGACTAGCCACATCAGATACAAGCTCTGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGCTGGACAGCAAGACTAGCCACATCAGATACAAGCTCTGTGGT  800

seq1  GTCTGACAGACCCTGCCTCAACTTTTAAAGTAGATGAATGACCCAA-GGT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTGACAGACCCTGCCTCAACTTTTAAAGTAGATGAATGACCCAAGGGT  850

seq1  TCCTAATAATCACATATCCATCAATGCACACTTGCCTACATTCACACTCA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCTAATAATCACATATCCATCAATGCACACTTGCCTACA-TCACACTCA  899

seq1  TGAAAAGAAGGAAAATAAAGACCCAGGCACTAAATTTCTGCCACAGCACT  949
      ||||||| | ||||   |||||||||||||| |||||||| |||||||||
seq2  TGAAAAGGATGAAA--TAAGACCCAGGCACT-AATTTCTG-CACAGCACT  945

seq1  AGATGCTGTGTAGCTTGTCTTTCTGGGACCTTGAATGCTGAAGGGCTAAC  999
      ||||||||||||||||||||||||||   ||||||||||||  |||||  
seq2  AGATGCTGTGTAGCTTGTCTTTCTGG--ACTTGAATGCTGA--GGCTA--  989

seq1  AAAGAGCTGATGGAAGCAAAATCTGACT  1027
       |||||||||||||||| ||||||||||
seq2  CAAGAGCTGATGGAAGC-AAATCTGACT  1016