BAC Information

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BAC

Clone NameB6Ng01-146A04
Chromosome19 (Build37)
Map Location 58,702,404 - 58,703,565
singlet/doubletsinglet
Overlap genenone
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik
Downstream genePnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A04.bB6Ng01-146A04.g
ACCDH943262DH943263
length1,139817
definitionDH943262|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A04, 5' end.DH943263|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtgctgcccagtgacggagacctcaatcccctgttgaaata
gggcttgacagaaaccttgaaacgtaaaattcgcatctataatcatgtct
attttttggcgtatgtgtggaggccagaccctgacactgggccctgtcct
ctctcactttccgtcttgttttttgactgcgtttctcactgctcattaac
tgcgtctgtttcgctggactggttcagtaaggttctgagatcctcaactc
tgtccctcagtacgcggattgcagaccagacctccacggcgaaccttcat
gtgggtgttgaaaatctgaactcaggaaggcccaaggtttacagcccttt
cctgctttttgggtgtgttcccagtacacatttagcacagcggcaggacc
tatgtgacagaaaagaggactgactgtgtagcagaagtatacttgccaca
cagaatgagcagatatgggggcagaaagggtacacactgaggctcggtca
ccagttatataggacgcgctgtcatactcacctatggccacaggcttgct
gctggcatggcaatcaataaagacatttctctacagactttgcgtgagca
gaaactgagcatgtgtcagagcagcgtttgggctatgacttcaagccaat
ttaacactatcaactggtcaattttgctttttaaaagcaacagaagtagt
taagcaacatctgaagctgacatctgaagacaaaatcttactgatcattg
atttcaattttaacacatcagtacatgctctgtcaaatgcaacacattgg
catagacacaggacatgctgcagagtgagcagggaaccagaaaacaatgt
tggcactctaatccctgagactgactgatttttttttgataaatacttta
aatgacaactttgacatggtaagtctctctctctctctctctctctctct
ttctctctctctctcttttaccatttattttgttataggtgtgcatgtat
ttgccactggtaagaggccaaagagagcatcggtgtcacaagctggagtt
acaggtggttgcagctgcgggtgggaactctaaagaagagcagagtctta
ttcttagctggaccatcacgcgtgtcctgacggtaagtt
gaattctggggacttctcagagggtatatatacatatatacatacataca
tacatacatacatatatacatatatacatatatgcacatatacacatata
cacatatacacatatacacatatacacatatacacatatacacatataca
catatacacatatacacatatacacatatacacatatacacatatacaca
tatacacatatacacatatacacatatacacatatacacatatacacata
tacacatatacacatatacacatatacacatatatacatatatatatgct
agtagggtgagttagttgctgttagttgcagtttgttaagcagtcgtgca
caaggaagaaagaagaaagaagaaattagatattctgacagcaaagatca
aatgtgcccccaaggaactcgatgcccctaatcaacaggaaggagtctaa
cgataatactgcccctttctatccttttttctctctgctctggtgttaag
ggtcaagggtagaaaaggatggagaacagtggaagacagaagacctacag
tagcaagactcgagtgcggtaatgacaggacagagatggtggatggtggt
gaggatcgaagtatgcatagacagagagtacataatacatcagacatgga
agaatgtcagatacgtactcttccgtcttacgcgtagcactggattgtga
agctccatagtaggccgaagagatttatcaccttgtgtacagagtatata
acatctgaatgtcccacgtgacgtccacacagtgttagaatatactgctc
tggatgaggatctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58702404_58703565
seq2: B6Ng01-146A04.b_49_1187

seq1  GAATTCATTGTGCTGCCCAGTGACGGAGACCTCAATCCCCTGTTGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCTGCCCAGTGACGGAGACCTCAATCCCCTGTTGAAATA  50

seq1  GGGCTTGACAGAAACCTTGAAACGTAAAATTCGCATCTATAATCATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGACAGAAACCTTGAAACGTAAAATTCGCATCTATAATCATGTCT  100

seq1  ATTTTTTGGCGTATGTGTGGAGGCCAGACCCTGACACTGGGCCCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGCGTATGTGTGGAGGCCAGACCCTGACACTGGGCCCTGTCCT  150

seq1  CTCTCACTTTCCGTCTTGTTTTTTGACTGCGTTTCTCACTGCTCATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTTCCGTCTTGTTTTTTGACTGCGTTTCTCACTGCTCATTAAC  200

seq1  TGCGTCTGTTTCGCTGGACTGGTTCAGTAAGGTTCTGAGATCCTCAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTGTTTCGCTGGACTGGTTCAGTAAGGTTCTGAGATCCTCAACTC  250

seq1  TGTCCCTCAGTACGCGGATTGCAGACCAGACCTCCACGGCGAACCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAGTACGCGGATTGCAGACCAGACCTCCACGGCGAACCTTCAT  300

seq1  GTGGGTGTTGAAAATCTGAACTCAGGAAGGCCCAAGGTTTACAGCCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTTGAAAATCTGAACTCAGGAAGGCCCAAGGTTTACAGCCCTTT  350

seq1  CCTGCTTTTTGGGTGTGTTCCCAGTACACATTTAGCACAGCGGCAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTTGGGTGTGTTCCCAGTACACATTTAGCACAGCGGCAGGACC  400

seq1  TATGTGACAGAAAAGAGGACTGACTGTGTAGCAGAAGTATACTTGCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACAGAAAAGAGGACTGACTGTGTAGCAGAAGTATACTTGCCACA  450

seq1  CAGAATGAGCAGATATGGGGGCAGAAAGGGTACACACTGAGGCTCGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGCAGATATGGGGGCAGAAAGGGTACACACTGAGGCTCGGTCA  500

seq1  CCAGTTATATAGGACGCGCTGTCATACTCACCTATGGCCACAGGCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATATAGGACGCGCTGTCATACTCACCTATGGCCACAGGCTTGCT  550

seq1  GCTGGCATGGCAATCAATAAAGACATTTCTCTACAGACTTTGCGTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATGGCAATCAATAAAGACATTTCTCTACAGACTTTGCGTGAGCA  600

seq1  GAAACTGAGCATGTGTCAGAGCAGCGTTTGGGCTATGACTTCAAGCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGCATGTGTCAGAGCAGCGTTTGGGCTATGACTTCAAGCCAAT  650

seq1  TTAACACTATCAACTGGTCAATTTTGCTTTTTAAAAGCAACAGAAGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTATCAACTGGTCAATTTTGCTTTTTAAAAGCAACAGAAGTAGT  700

seq1  TAAGCAACATCTGAAGCTGACATCTGAAGACAAAATCTTACTGATCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACATCTGAAGCTGACATCTGAAGACAAAATCTTACTGATCATTG  750

seq1  ATTTCAATTTTAACACATCAGTACATGCTCTGTCAAATGCAACACATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATTTTAACACATCAGTACATGCTCTGTCAAATGCAACACATTGG  800

seq1  CATAGACACAGGACATGCTGCAGAGTGAGCAGGGAACCAGAAAACAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACACAGGACATGCTGCAGAGTGAGCAGGGAACCAGAAAACAATGT  850

seq1  TGGCAACTCTAATCCCTGAGACTGACTGATTTTTTTTTGATAAATACTTT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGC-ACTCTAATCCCTGAGACTGACTGATTTTTTTTTGATAAATACTTT  899

seq1  AAATGACAACTTTGACATGGTAAGTCTCTCTCTCTCTCTCTCTCTCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAACTTTGACATGGTAAGTCTCTCTCTCTCTCTCTCTCTCTCTC  949

seq1  TTTCTCTCTCTCTCTCTTTTTACCATTTATTTTTGTTTATAGGTGTGCAT  1000
      |||||||||||||||| ||||||||||||||||   ||||||||||||||
seq2  TTTCTCTCTCTCTCTC-TTTTACCATTTATTTT--GTTATAGGTGTGCAT  996

seq1  GTATTTGCCACTTGGGTACAGAGGCCAAAAGAGAGCATCGGGTGTCACAA  1050
      ||||||||||||  |||| ||||||| |||||||||||| |||||||| |
seq2  GTATTTGCCACT--GGTA-AGAGGCC-AAAGAGAGCATC-GGTGTCAC-A  1040

seq1  AGCTGGAGTTACAGGTGGTTGCAAGCTGCCGGGTGGGGACTTCTAAAAGA  1100
      |||||||||||||||||||||| ||||| |||||||| || ||| |||||
seq2  AGCTGGAGTTACAGGTGGTTGC-AGCTG-CGGGTGGGAAC-TCT-AAAGA  1086

seq1  GAAGCAAGAGTTCTTAATTCTTAAGCCTTGAGCCATCACGCTGAGTCCCT  1150
        ||| |||| |||| |||||| |||  ||  ||||||||| | || |||
seq2  AGAGC-AGAG-TCTT-ATTCTT-AGC--TGGACCATCACGC-GTGT-CCT  1128

seq1  GACGTGTAAGTT  1162
      |||| |||||||
seq2  GACG-GTAAGTT  1139