BAC Information

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BAC

Clone NameB6Ng01-148P22
Chromosome19 (Build37)
Map Location 8,586,309 - 8,587,405
singlet/doubletsinglet
Overlap geneLOC666612
Upstream gene5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004
Downstream geneEG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148P22.bB6Ng01-148P22.g
ACCDH945453DH945454
length1,1651,077
definitionDH945453|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P22, 5' end.DH945454|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgtagaatagcaactctcaattctcgaagcatttgctcaaa
tcccatggtccaattctgtaacatataacgagacaaagtttttgacaaat
ttgctgctcttgtagaattttcaaactgaacagaagtaacacaaaggcca
ggcattttgtattcacagcccaattgagccaactgccaaagaatatccac
ttgctcttggactaggtcgatacgttgatttatcaacatcaaccctcctt
gtatctgtgagttggctgtggcctgtttatctaaggccattgtgactgtc
atagaaagctcattaatagtttgtgttgtttgaacagtagtagatagaac
aagtgctgaggccatgacagaggctgcaaccactgctgtggccaccagtc
caactatgatagcagaaataccaaaatctcttttccctcaaaacaaagtc
aagctattaggggcatctacaggaacaggaacaaatctaggcatgcgggt
aaccaaagcaaaaggatatttcttagcatcccagcataaggcataaaaac
atttttcttgtgagcaatctatctctatctgattctgatttaagcttgta
ttacttaccacccacaaaaacgggggccatacacataccggggtggtggt
aaaatttacctctttctgttttttatatctaacattggaggtggtccatt
taaaagaatttggactctgcttatcagaccaaccggtcttcaaggtacct
ttccaatcaaaggtcaattctcctttctcactagaatttcctccaatcat
tgccatggggggcaagatcagtacagcttccattaaccccacaaagcaac
cactgatcaaaagggttagtattagttcggagggggttcatagtacttaa
aatcatattccagcaaaagtatcatttatactctctactaattatatggg
ggaaaaggaaaaattatttcctctactgcccaagtatatttttttagctt
tggcaacctgtccaagggtaacattacattcttccattggaacctttctt
tgccaaaacgaatgccaattctttgattgttgaagtggcttaatttcagg
atttcggctaggccaccattcctcttaaaactatgatatcagcctttata
tagactgttacgccc
gaattctctttaatagggacggggtttcgttttctcgctctcttgcttct
tgctctcttgcttcttacactcctgctcctgaagatgtaagcaataaagt
tttgccgcagaagattctggtctgtggtgttcttcctggccgggcgtgag
aacgcgtctaataacaattggtgccgaaacccgggacgagaaaaaaactc
gggactggcgcaaggaagatccctcattccagaaccagaactgcgggtcg
cggtaataaaggttcccgtaaagcagactgttaagaaggattcaactgta
tgaattcagaacttttcagctggggaacgagagtaccagtgagtacagct
ttacgaggtaagtctgatcttgaactttctaaggaaattcaagacagtct
atcagaagtaaagtggaatatgtttggccttgaattttttctggtgttag
gagcccttttgttccttttcacatgttatcaagtgattaagatagggctg
aaaattctagaggaaattcaggacaagctatcagaagtaaagcggggaga
gagagtaggagcaaagagaaaatatggtacacaaaataagtatacaggcc
tttccaagggtcttgaacccgaggaaaagttaaggttaggtaggaatacc
tggagagagattagaagaaaaagaggaaaaagggaaaagaagaaagatca
attagcggaggtctctaggagatactcgtcactagatgagctcaggaagc
cagctcttagtagttctgaagcagatgaagaattctcctctgaggaaaca
gactgggaggaagaagcagcccattaccagccagctaattggtcaagaaa
aaagccaaagcggctggcgaaggccagtttgctgattggcctcaggcagt
cggcttcaaggtccgccctatgcgagtccccgccctgcgtagtgcgtcag
caatgcgcagagaggcagtgcgcagagagcagtgcgcaaactcatcatcc
cagagagacaaggaaaatacaacagcatttctgtcttgagaaccgagggt
ggggcggtccacgcccggtagaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8586309_8587405
seq2: B6Ng01-148P22.b_84_1207

seq1  TTGCTCAAATTCCATGGTCCAGTTCTGTAACATATAACGAGACAAAGTTT  50
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TTGCTCAAATCCCATGGTCCAATTCTGTAACATATAACGAGACAAAGTTT  50

seq1  TTGACAAATTTGCTGCTCTTGTAGAATTTTCAAACTGAACAGAGGTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGACAAATTTGCTGCTCTTGTAGAATTTTCAAACTGAACAGAAGTAACA  100

seq1  CAAAGGCCAGGCATCTTGTATTCACAGCCCAATTGAGCCAACTGCCAAAG  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCAGGCATTTTGTATTCACAGCCCAATTGAGCCAACTGCCAAAG  150

seq1  AATATCCACTTGCTCTTGGACTAGGTCGATGTGTTGATTTATCAACATCA  200
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AATATCCACTTGCTCTTGGACTAGGTCGATACGTTGATTTATCAACATCA  200

seq1  ACCCTCCTTGTATCTGTGAGTTGGCTGTGGCCTGTTTATCTAAGGCCGAT  250
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ACCCTCCTTGTATCTGTGAGTTGGCTGTGGCCTGTTTATCTAAGGCCATT  250

seq1  GTGGCCGTCATAGAAAGCTCGTTAATAGTTTGTGTTGTTTGAACAGTAGT  300
      ||| | |||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGACTGTCATAGAAAGCTCATTAATAGTTTGTGTTGTTTGAACAGTAGT  300

seq1  AGATAGAGTGAGTGCCGAGGCCGTGACAGAGGCTGCAACCACTGCTGTGG  350
      |||||||   ||||| |||||| |||||||||||||||||||||||||||
seq2  AGATAGAACAAGTGCTGAGGCCATGACAGAGGCTGCAACCACTGCTGTGG  350

seq1  CCACCAGTCCAACTATGATAGCAGAAATACCAAAATCTCTTTTCCCTCGA  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCACCAGTCCAACTATGATAGCAGAAATACCAAAATCTCTTTTCCCTCAA  400

seq1  AACAAAGTCAAGCTATTAGGGGCATCTACAGGAACAGGAACAAATCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTCAAGCTATTAGGGGCATCTACAGGAACAGGAACAAATCTAGG  450

seq1  CATGCGGGTAACCAAAGCAAAAGGATATTTCTTAGCATCCCAGCATAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGGGTAACCAAAGCAAAAGGATATTTCTTAGCATCCCAGCATAAGG  500

seq1  CATAAAAACATTTTTCTTGTGAGCAATCTATCTCTATCTAATTCTGATTT  550
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATAAAAACATTTTTCTTGTGAGCAATCTATCTCTATCTGATTCTGATTT  550

seq1  AAGCTTTTGCTACTTACCACCCACAAAAACGGGGGCCATACACATACCAG  600
      |||||| |  |||||||||||||||||||||||||||||||||||||| |
seq2  AAGCTTGTATTACTTACCACCCACAAAAACGGGGGCCATACACATACCGG  600

seq1  GATGGTGGTAAAATTTACCTCTTTCTGGTTTTTATATCTAACATTGGAGG  650
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGGTGGTAAAATTTACCTCTTTCTGTTTTTTATATCTAACATTGGAGG  650

seq1  CGGTCCATTTAAAAAAATTTGGACTCTGCTTATCAGACCGACCGGTCTTC  700
       ||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TGGTCCATTTAAAAGAATTTGGACTCTGCTTATCAGACCAACCGGTCTTC  700

seq1  AAGGTACCTTTCCAATCAAAGGTCAATTCTCCTTTCTCACTAGAACCTCC  750
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AAGGTACCTTTCCAATCAAAGGTCAATTCTCCTTTCTCACTAGAATTTCC  750

seq1  TCCAATCATTGCCAT-GGAGGTGAGATCAGTACAGCTTCCATTAAACCC-  798
      ||||||||||||||| || ||  |||||||||||||||||||||| ||| 
seq2  TCCAATCATTGCCATGGGGGGCAAGATCAGTACAGCTTCCATTAACCCCA  800

seq1  -------ACCACTGATCAAAAGGATTAGTATTAGTTCGGAGGGGGTCCAT  841
             |||||||||||||||| |||||||||||||||||||||| |||
seq2  CAAAGCAACCACTGATCAAAAGGGTTAGTATTAGTTCGGAGGGGGTTCAT  850

seq1  AGTAC-TAAAATCATA-TCCAGCAAAAGTATCA-TTATACTCTCTACTAA  888
      ||||| |||||||||| |||||||||||||||| ||||||||||||||||
seq2  AGTACTTAAAATCATATTCCAGCAAAAGTATCATTTATACTCTCTACTAA  900

seq1  -TATAT-GGGGAAAAGGAAAAA-TATTT-CTCTACTGCCCAAGTATA-TT  933
       ||||| ||||||||||||||| ||||| |||||||||||||||||| ||
seq2  TTATATGGGGGAAAAGGAAAAATTATTTCCTCTACTGCCCAAGTATATTT  950

seq1  TTTTAGC-TTGGCAACCTGTCCAA-GGTAACATTACATT-TTCCATAG--  978
      ||||||| |||||||||||||||| |||||||||||||| |||||| |  
seq2  TTTTAGCTTTGGCAACCTGTCCAAGGGTAACATTACATTCTTCCATTGGA  1000

seq1  ACCCTTCCTTGCAAAAGGGTA---CCATTC-TTGGTTGTGAAGGCGGCTT  1024
      ||| ||| |||| |||  | |   | |||| ||| ||||  | | |||||
seq2  ACCTTTCTTTGCCAAAACGAATGCCAATTCTTTGATTGTTGAAGTGGCTT  1050

seq1  ATTTCCAGGTTTTCGGCTAGGCCACCA-TCCTCTAATAACTATGGCATCA  1073
      | || |||| ||||||||||||||||| |||||| | |||||||  ||||
seq2  AATTTCAGGATTTCGGCTAGGCCACCATTCCTCTTAAAACTATGATATCA  1100

seq1  GCCTTTATATCAGTC-ATTACGCCC  1097
      |||||||||| || |  ||||||||
seq2  GCCTTTATAT-AGACTGTTACGCCC  1124