BAC Information

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BAC

Clone NameB6Ng01-149L24
Chromosome19 (Build37)
Map Location 28,545,960 - 28,677,465
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneLOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L24.bB6Ng01-149L24.g
ACCDH946005DH946006
length6301,048
definitionDH946005|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L24, 5' end.DH946006|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,545,960 - 28,546,589)(28,676,435 - 28,677,465)
sequence
gaattctgctcatctctagaaggttgaattactgcacaaaacagaggcca
gatctgtcacgaaactcaggtataggtgggggagattcatgtataaaatg
tatcccatttattcataactaattgaattgagtccccctttcagaagatg
tggatctatgtaagtgacaaacgaggtacttcctcgtggatcctgaaata
aaggaccaaatcagacctccttaaactatggactaatgtttctcctcaag
gaacagtgtcaatcattatcttcctcactttattttattgctattgtaag
acatcctgaccaaggccatttatagaagagtttattgggggtttacagta
tcagatagttatatttcatgactatcatggcggggagcatgacggcaggg
aggcaggcatggcactggagcagtagctgagaacatacatcctgagacac
cagagtgaagcagagagagttaactggggatcccaatggcctggattttg
aaacctcaaacctgctcctggtgacacacctcatgcagcaaggccacacg
tcccgatccttccaaacatttccaccaactaaagacctagtgtttaaaac
atataagccttggggtggggtagggtgggg
gaattcaatgtcagcatgggatccattgtgaattctaggtttgtctgggc
ttcagaggcacagagtgaagccctgtcccaacctcagaatctgtctacct
gccttttgtgtggatgtatttacgtatgcatgcatgtatctatcatctat
agaatctgaaattttttatgagaaatgagtactataaacatcttttacta
ttaagaatcttatattgtacacaatgaaatatgataccctggactccccc
atttctccctccaactctccatgtacccccaacatgttcgtctcctcgct
tcaggtatataccttcataacccaccgagtgcagttactgcagcccacat
tgtaactgagtccaagctcatgggctgggcagtggccacattctcagcaa
agaatgatttaccttccccagcgattgattatcgctgccctagttcctga
gtaaggggtggggtttgacgagcttgatcttcatgctctctgatcctcat
tggcagtgggactagtgtagatgtcctgtttaacgctgagcacagaaact
cagtattttaaagatattatttctggtcttttacttttgttatattttaa
aatttagaaatgtcttgcctttctaaatatttatcatgagaacttctttt
gggctcatatgaaatattacagacacattatagaggcaaaaagccattac
catttacttctaacttttcttccgcaaagttgcactttgtcctgattttt
tttcttttgttttagaatcattgttttaccatttctttattttgtctgag
tcatcaatattttttcttggtggtctttaatatccttgtaccgttggcta
agaagaataggcaggacaccagttgacgtgaaccatcactaagctccaat
ttactgttttgggttataaattgactgtttaatcggtcctccattcaaca
tatattttgattaaactgtcaccttaaatgtagaaaatgaagaaaaactg
ggactctgtggcaggaacaaggtttggaaggaccagggggaaaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28545960_28546589
seq2: B6Ng01-149L24.b_43_672

seq1  GAATTCTGCTCATCTCTAGAAGGTTGAATTACTGCACAAAACAGAGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCATCTCTAGAAGGTTGAATTACTGCACAAAACAGAGGCCA  50

seq1  GATCTGTCACGAAACTCAGGTATAGGTGGGGGAGATTCATGTATAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCACGAAACTCAGGTATAGGTGGGGGAGATTCATGTATAAAATG  100

seq1  TATCCCATTTATTCATAACTAATTGAATTGAGTCCCCCTTTCAGAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATTTATTCATAACTAATTGAATTGAGTCCCCCTTTCAGAAGATG  150

seq1  TGGATCTATGTAAGTGACAAACGAGGTACTTCCTCGTGGATCCTGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTATGTAAGTGACAAACGAGGTACTTCCTCGTGGATCCTGAAATA  200

seq1  AAGGACCAAATCAGACCTCCTTAAACTATGGACTAATGTTTCTCCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCAAATCAGACCTCCTTAAACTATGGACTAATGTTTCTCCTCAAG  250

seq1  GAACAGTGTCAATCATTATCTTCCTCACTTTATTTTATTGCTATTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGTCAATCATTATCTTCCTCACTTTATTTTATTGCTATTGTAAG  300

seq1  ACATCCTGACCAAGGCCATTTATAGAAGAGTTTATTGGGGGTTTACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGACCAAGGCCATTTATAGAAGAGTTTATTGGGGGTTTACAGTA  350

seq1  TCAGATAGTTATATTTCATGACTATCATGGCGGGGAGCATGACGGCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGTTATATTTCATGACTATCATGGCGGGGAGCATGACGGCAGGG  400

seq1  AGGCAGGCATGGCACTGGAGCAGTAGCTGAGAACATACATCCTGAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCATGGCACTGGAGCAGTAGCTGAGAACATACATCCTGAGACAC  450

seq1  CAGAGTGAAGCAGAGAGAGTTAACTGGGGATCCCAATGGCCTGGATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAAGCAGAGAGAGTTAACTGGGGATCCCAATGGCCTGGATTTTG  500

seq1  AAACCTCAAACCTGCTCCTGGTGACACACCTCATGCAGCAAGGCCACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAAACCTGCTCCTGGTGACACACCTCATGCAGCAAGGCCACACG  550

seq1  TCCCGATCCTTCCAAACATTTCCACCAACTAAAGACCTAGTGTTTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATCCTTCCAAACATTTCCACCAACTAAAGACCTAGTGTTTAAAAC  600

seq1  ATATAAGCCTTGGGGTGGGGTAGGGTGGGG  630
      ||||||||||||||||||||||||||||||
seq2  ATATAAGCCTTGGGGTGGGGTAGGGTGGGG  630

seq1: chr19_28676435_28677465
seq2: B6Ng01-149L24.g_70_1117 (reverse)

seq1  ACTCC-TTCCCCCTTGTCCTTCCAAACCCTGTTCCTGCCACAGAGT-CCA  48
      ||||| |||||||| ||||||||||||| ||||||||||||||||| |||
seq2  ACTCCTTTCCCCCTGGTCCTTCCAAACCTTGTTCCTGCCACAGAGTCCCA  50

seq1  G-TTTTCTTCATTTCTTACATTTAAGGT-ACAGTTTAATC-AAATATATG  95
      | ||||||||||||  |||||||||||| ||||||||||| |||||||||
seq2  GTTTTTCTTCATTTTCTACATTTAAGGTGACAGTTTAATCAAAATATATG  100

seq1  TTGAATGGAGGACCGATTAAACAGTCAATTAATAA-CCAAAACAGTAAAT  144
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TTGAATGGAGGACCGATTAAACAGTCAATTTATAACCCAAAACAGTAAAT  150

seq1  TGGAGCTTAGTGATGGTTCACGTC-ACTGGTGT-CTGCCTATTC-TCTTA  191
      |||||||||||||||||||||||| |||||||| |||||||||| |||||
seq2  TGGAGCTTAGTGATGGTTCACGTCAACTGGTGTCCTGCCTATTCTTCTTA  200

seq1  GCC-ACGGTACAAGGATATTAAAGACCACCA--GAAAAATATTGATGACT  238
      ||| |||||||||||||||||||||||||||   ||||||||||||||||
seq2  GCCAACGGTACAAGGATATTAAAGACCACCAAGAAAAAATATTGATGACT  250

seq1  CAGAC-AAATAAAG-AATGGT-AAACAATGATTCTAAAACAAAAG-AAAA  284
      ||||| |||||||| |||||| ||||||||||||||||||||||| ||||
seq2  CAGACAAAATAAAGAAATGGTAAAACAATGATTCTAAAACAAAAGAAAAA  300

seq1  AAATCAGGACAAAGTGCAACTTTGCGGAAG-AAAGTTAGAAGTAAATGGT  333
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATCAGGACAAAGTGCAACTTTGCGGAAGAAAAGTTAGAAGTAAATGGT  350

seq1  AATGGCTTTTTGCCTCTATAATGTGTCTGTAATATTTCATATGAGCCCAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTTTGCCTCTATAATGTGTCTGTAATATTTCATATGAGCCCAA  400

seq1  AAGAAGTTCTCATGATAAATATTTAGAAAGGCAAGACATTTCTAAATTTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTCATGATAAATATTTAGAAAGGCAAGACATTTCTAAATTTT  450

seq1  AAAATATAACAAAAGTAAAAGACCAGAAATAATATCTTTAAAATACTGAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACAAAAGTAAAAGACCAGAAATAATATCTTTAAAATACTGAG  500

seq1  TTTCTGTGCTCAGCGTTAAACAGGACATCTACACTAGTCCCACTGCCAAT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCTCAGCGTTAAACAGGACATCTACACTAGTCCCACTGCCAAT  550

seq1  GAGGATCAGAGAGCATGAAGATCAAGCTCGTCAAACCCCACCCCTTACTC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCAGAGAGCATGAAGATCAAGCTCGTCAAACCCCACCCCTTACTC  600

seq1  AGGAACTAGGGCAGCGATAATCAATCGCTGGGGAAGGTAAATCATTCTTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAGGGCAGCGATAATCAATCGCTGGGGAAGGTAAATCATTCTTT  650

seq1  GCTGAGAATGTGGCCACTGCCCAGCCCATGAGCTTGGACTCAGTTACAAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATGTGGCCACTGCCCAGCCCATGAGCTTGGACTCAGTTACAAT  700

seq1  GTGGGCTGCAGTAACTGCACTCGGTGGGTTATGAAGGTATATACCTGAAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGCAGTAACTGCACTCGGTGGGTTATGAAGGTATATACCTGAAG  750

seq1  CGAGGAGACGAACATGTTGGGGGTACATGGAGAGTTGGAGGGAGAAATGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAGACGAACATGTTGGGGGTACATGGAGAGTTGGAGGGAGAAATGG  800

seq1  GGGAGTCCAGGGTATCATATTTCATTGTGTACAATATAAGATTCTTAATA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCCAGGGTATCATATTTCATTGTGTACAATATAAGATTCTTAATA  850

seq1  GTAAAAGATGTTTATAGTACTCATTTCTCATAAAAAATTTCAGATTCTAT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGATGTTTATAGTACTCATTTCTCATAAAAAATTTCAGATTCTAT  900

seq1  AGATGATAGATACATGCATGCATACGTAAATACATCCACACAAAAGGCAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAGATACATGCATGCATACGTAAATACATCCACACAAAAGGCAG  950

seq1  GTAGACAGATTCTGAGGTTGGGACAGGGCTTCACTCTGTGCCTCTGAAGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGATTCTGAGGTTGGGACAGGGCTTCACTCTGTGCCTCTGAAGC  1000

seq1  CCAGACAAACCTAGAATTCACAATGGATCCCATGCTGACATTGAATTC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAACCTAGAATTCACAATGGATCCCATGCTGACATTGAATTC  1048