BAC Information

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BAC

Clone NameB6Ng01-150I04
Chromosome19 (Build37)
Map Location 58,164,632 - 58,248,134
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I04.bB6Ng01-150I04.g
ACCDH946571DH946572
length1,0701,028
definitionDH946571|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I04, 5' end.DH946572|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,164,632 - 58,165,726)(58,247,103 - 58,248,134)
sequence
gaattctcataaaccttgaggaaataaacttgcctgtgtggattaaagtg
tttcacagcataaaggaaccaagctgttctgagacaagtgcaagacaagt
gtacatcaacctagcagagctggcatgggaaagatgcctggaaaaacggc
catcagtttatttaagacaacgaaacaaaagaaaaaaaatctagtaaaaa
tcctgggaaatcataatgaaaaaattttgaaagggaataatcattctagg
tattaatccattaaactatagcaattaaagcaacatgaagtcagaacaaa
ttaatcagtaaagaatacaaaaataggcacaaataattatggtaatttag
cgcaataataaagtctataaataaatgggctaaggatgactgttccaaaa
tagtatgaagaccagcagctagatgatgttcaaaaattaccacttgaaat
cacagcttaaattaacttctggatggctcaaatagcatattataaaagga
catgcatacggatactagaacaagataaaacagaggctataaaagtggct
cagtcggtaaagtgctcacagggacttgcgcccagtcccaaggacccacc
ttgaaaaaaaaaatcagatgtgatggtggcattcataatccaagcttgag
gggtggagagggggggttccagggttcagtcagcaggctccaagccacca
agaaattctgcctcaaaaagcaagaaagagcaagagataattaaattata
ccctcgaaaattaaaggaaacacaaggtggtcaacccctgaggaacagta
cccaagacccacatgcatgggcctgcacgatgaacacacgggcacatgac
aatacaggaatattttttgtagacttttcatgaggaaactcacaaagtaa
aagctagtgttggtggctgtcaccgtgacagatgcatctatatttggcaa
ctgggttgttaatattataacagaatcatactccaactgaagagtcctgg
ttaatgtcagaccgtgaccctcagactaaactcggagtgacagcatgctc
cagcatgtctgctagaaata
gaattctttccatatatcctataattaatctctgtctcattgggagaaaa
gcccggtacggttagcaacaatgcagtccatgagcagtaggcagcagata
ctgcacctatcaggagtgcatacagcaatttcgtcctccctttattaact
cccctaggtgtctaaatagactggaaggagagcagataaatgagcctttg
tgctgcaacaggactatctgctgtggctgagaggaggacacacggtgcat
caggctggaggactttctgcttagtgtctgctccatgtgcatctacagct
tagcagatcaggcctggggagcagccctcctttacagactggcctccaca
gcgcccttctgtgtgtaatggcctctctggtttcctctccaggttgacaa
ttaacgtggctgccatactggattttaggaagtgccattttccttaagtg
ggctccatctgtgaactttgctgagccctggcaccctctgcgggaggcgg
ggatagcacacagcttagccattaacttgcttgtcggtaatttccattct
cgtcttgtccgtaggagattccatctgtggtgggaagtgtgggcacacag
ttttgttccagaacacagtcctcgctagctcggacatttgctaccagagg
ctatgggtgtcactggcttttggacggcacgctgaagacagtaacttgcc
ctgaggtaaaaggagagcagacggagcatagatgggagaaggagagaaga
aagggccttttagaatctggatgtgcctgacttgagtcttagacgtgtaa
attattattttgcatgaaagttaaacagtctttgacaaagtgtctccttc
aaatttcttggcatttcccttgcctgatgaagagatactgctcttctctt
gtttctcatgataacttgaactgcctgcttaaggtctgagcatgcttcag
aagtgcactctttgagaagtcattaagtcgagggctccattctcatgaac
ggcattagcagcttatgaaagagctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58164632_58165726
seq2: B6Ng01-150I04.b_42_1111

seq1  GAATTCTCATAAACCTTGAGGAAATAAACTTGCCTGTGTGGATTAAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAAACCTTGAGGAAATAAACTTGCCTGTGTGGATTAAAGTG  50

seq1  TTTCACAGCATAAAGGAACCAAGCTGTTCTGAGACAAGTGCAAGACAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGCATAAAGGAACCAAGCTGTTCTGAGACAAGTGCAAGACAAGT  100

seq1  GTACATCAACCTAGCAGAGCTGGCATGGGAAAGATGCCTGGAAAAACGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCAACCTAGCAGAGCTGGCATGGGAAAGATGCCTGGAAAAACGGC  150

seq1  CATCAGTTTATTTAAGACAACGAAACAAAAGAAAAAAAATCTAGTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTTATTTAAGACAACGAAACAAAAGAAAAAAAATCTAGTAAAAA  200

seq1  TCCTGGGAAATCATAATGAAAAAATTTTGAAAGGGAATAATCATTCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAAATCATAATGAAAAAATTTTGAAAGGGAATAATCATTCTAGG  250

seq1  TATTAATCCATTAAACTATAGCAATTAAAGCAACATGAAGTCAGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCCATTAAACTATAGCAATTAAAGCAACATGAAGTCAGAACAAA  300

seq1  TTAATCAGTAAAGAATACAAAAATAGGCACAAATAATTATGGTAATTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTAAAGAATACAAAAATAGGCACAAATAATTATGGTAATTTAG  350

seq1  CGCAATAATAAAGTCTATAAATAAATGGGCTAAGGATGACTGTTCCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATAATAAAGTCTATAAATAAATGGGCTAAGGATGACTGTTCCAAAA  400

seq1  TAGTATGAAGACCAGCAGCTAGATGATGTTCAAAAATTACCACTTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAAGACCAGCAGCTAGATGATGTTCAAAAATTACCACTTGAAAT  450

seq1  CACAGCTTAAATTAACTTCTGGATGGCTCAAATAGCATATTATAAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTAAATTAACTTCTGGATGGCTCAAATAGCATATTATAAAAGGA  500

seq1  CATGCATACGGATACTAGAACAAGATAAAACAGAGGCTATAAAAGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACGGATACTAGAACAAGATAAAACAGAGGCTATAAAAGTGGCT  550

seq1  CAGTCGGTAAAGTGCTCACAGGGACTTGCGCCCAGTCCCAAGGACCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGTAAAGTGCTCACAGGGACTTGCGCCCAGTCCCAAGGACCCACC  600

seq1  TTGAAAAAAAAAATCAGATGTGATGGTGGCATTCATAATCCAAGCTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAAAAATCAGATGTGATGGTGGCATTCATAATCCAAGCTTGAG  650

seq1  GGGTGGAGAGGGGGGGTTCCAGGGTTCAGTCAGCAGGCTCCAAGCCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGAGGGGGGGTTCCAGGGTTCAGTCAGCAGGCTCCAAGCCACCA  700

seq1  AGAAATTCTGCCTCAAAAAGCAAGAAAGAGCAAGAGATAATTAAATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTGCCTCAAAAAGCAAGAAAGAGCAAGAGATAATTAAATTATA  750

seq1  CCCTCGAAAATTAAAGGAAACACAAGGTGGTCAACCCCTGAGGAACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGAAAATTAAAGGAAACACAAGGTGGTCAACCCCTGAGGAACAGTA  800

seq1  CCCAAGACCCACATGCATGGGCCTGCACGATGAACACACGGGCACATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACCCACATGCATGGGCCTGCACGATGAACACACGGGCACATGAC  850

seq1  AATACAGGAAATATTTTTTGTAGACTTTTCATGAGGAAAACTCACAAAGT  900
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  AATACAGG-AATATTTTTTGTAGACTTTTCATGAGG-AAACTCACAAAGT  898

seq1  AAAAGGCTAGTGTTGGTGGCTGTCACCGTGACAGATGCAATCTATATTTG  950
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAA-GCTAGTGTTGGTGGCTGTCACCGTGACAGATGC-ATCTATATTTG  946

seq1  GCAAACTGTGGTGTTTATTAATATAACAGAATCAATACTCCCAACTGAAA  1000
      || ||||| |||  ||| || |||||||||||| ||||| ||||||| ||
seq2  GC-AACTG-GGTTGTTAATATTATAACAGAATC-ATACT-CCAACTG-AA  991

seq1  GAGTCCTGGTTAATTTGTCAGACACGTGACCCTCAGAAACTAAACTCGGG  1050
      |||||||||||||  |||||||| ||||||||||||  ||||||||||| 
seq2  GAGTCCTGGTTAA--TGTCAGAC-CGTGACCCTCAG--ACTAAACTCGG-  1035

seq1  AAGTGAACAGGCATGGCCTCCACAGGCATGTCTGCCTAAGAAATA  1095
       |||| ||| |||||  |||||   ||||||||||   |||||||
seq2  -AGTG-ACA-GCATG--CTCCA---GCATGTCTGC--TAGAAATA  1070

seq1: chr19_58247103_58248134
seq2: B6Ng01-150I04.g_67_1094 (reverse)

seq1  TTCAGCTCCTTTCAT-AGCTGCTAATGCCGTTCATGAGAATGGAGCCCTC  49
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCAGCT-CTTTCATAAGCTGCTAATGCCGTTCATGAGAATGGAGCCCTC  49

seq1  GGACTTAATGACTTTCTCAAAG-GTGCACTTCTGAAGCATGCTCAGACCT  98
       ||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  -GACTTAATGAC-TTCTCAAAGAGTGCACTTCTGAAGCATGCTCAGACCT  97

seq1  T-AGCAGGCAGTTCAGGTATCCATTGAGAAAC-AGAG-AGAGCAGTATCT  145
      | ||||||||||||| ||   || |||||||| |||| ||||||||||||
seq2  TAAGCAGGCAGTTCAAGTTATCA-TGAGAAACAAGAGAAGAGCAGTATCT  146

seq1  CTTTCATCAGGCAAGGGGAAATGCCAAGAAATTTGAAGGAGAACACTTTG  195
      | |||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  C-TTCATCAGGCAA-GGGAAATGCCAAGAAATTTGAAGGAG-ACACTTTG  193

seq1  TCAAAAGACTGTTTTAACTTTCATGCAAAATAATAATTTACACGTCTAAG  245
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TC-AAAGACTG-TTTAACTTTCATGCAAAATAATAATTTACACGTCTAAG  241

seq1  ACTCAAGTCAGGCACATCCAGATTCTAAAAGGCCCTTTCTTCTCTCCTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTCAGGCACATCCAGATTCTAAAAGGCCCTTTCTTCTCTCCTTC  291

seq1  TCCCATCTATGCTCCGTCTGCTCTCCTTTTACCTCAGGGCAAGTTACTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTATGCTCCGTCTGCTCTCCTTTTACCTCAGGGCAAGTTACTGT  341

seq1  CTTCAGCGTGCCGTCCAAAAGCCAGTGACACCCATAGCCTCTGGTAGCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCGTGCCGTCCAAAAGCCAGTGACACCCATAGCCTCTGGTAGCAA  391

seq1  ATGTCCGAGCTAGCGAGGACTGTGTTCTGGAACAAAACTGTGTGCCCACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCGAGCTAGCGAGGACTGTGTTCTGGAACAAAACTGTGTGCCCACA  441

seq1  CTTCCCACCACAGATGGAATCTCCTACGGACAAGACGAGAATGGAAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACCACAGATGGAATCTCCTACGGACAAGACGAGAATGGAAATTA  491

seq1  CCGACAAGCAAGTTAATGGCTAAGCTGTGTGCTATCCCCGCCTCCCGCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAAGCAAGTTAATGGCTAAGCTGTGTGCTATCCCCGCCTCCCGCAG  541

seq1  AGGGTGCCAGGGCTCAGCAAAGTTCACAGATGGAGCCCACTTAAGGAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCAGGGCTCAGCAAAGTTCACAGATGGAGCCCACTTAAGGAAAA  591

seq1  TGGCACTTCCTAAAATCCAGTATGGCAGCCACGTTAATTGTCAACCTGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTCCTAAAATCCAGTATGGCAGCCACGTTAATTGTCAACCTGGA  641

seq1  GAGGAAACCAGAGAGGCCATTACACACAGAAGGGCGCTGTGGAGGCCAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACCAGAGAGGCCATTACACACAGAAGGGCGCTGTGGAGGCCAGT  691

seq1  CTGTAAAGGAGGGCTGCTCCCCAGGCCTGATCTGCTAAGCTGTAGATGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGGAGGGCTGCTCCCCAGGCCTGATCTGCTAAGCTGTAGATGCA  741

seq1  CATGGAGCAGACACTAAGCAGAAAGTCCTCCAGCCTGATGCACCGTGTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCAGACACTAAGCAGAAAGTCCTCCAGCCTGATGCACCGTGTGT  791

seq1  CCTCCTCTCAGCCACAGCAGATAGTCCTGTTGCAGCACAAAGGCTCATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCAGCCACAGCAGATAGTCCTGTTGCAGCACAAAGGCTCATTT  841

seq1  ATCTGCTCTCCTTCCAGTCTATTTAGACACCTAGGGGAGTTAATAAAGGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCTCCTTCCAGTCTATTTAGACACCTAGGGGAGTTAATAAAGGG  891

seq1  AGGACGAAATTGCTGTATGCACTCCTGATAGGTGCAGTATCTGCTGCCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGAAATTGCTGTATGCACTCCTGATAGGTGCAGTATCTGCTGCCTA  941

seq1  CTGCTCATGGACTGCATTGTTGCTAACCGTACCGGGCTTTTCTCCCAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATGGACTGCATTGTTGCTAACCGTACCGGGCTTTTCTCCCAATG  991

seq1  AGACAGAGATTAATTATAGGATATATGGAAAGAATTC  1032
      |||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGATTAATTATAGGATATATGGAAAGAATTC  1028