BAC Information

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BAC

Clone NameB6Ng01-151M09
Chromosome19 (Build37)
Map Location 54,968,753 - 55,139,394
singlet/doubletdoublet
Overlap genenone
Upstream genePdcd4, 2310002J21Rik, Shoc2, Adra2a, LOC100043004
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151M09.bB6Ng01-151M09.g
ACCDH947509DH947510
length1,1261,170
definitionDH947509|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M09, 5' end.DH947510|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,138,259 - 55,139,394)(54,968,753 - 54,969,966)
sequence
gaattctcccttttataagttggagctaataaacgtaagtgccagacgag
tcctttagagcgccccagaagtacaatttacttccagcgtgaaggtgagc
tgcttttgttatactgggttttcttgaggcaggttttgacagtggattcg
gaaggtcccttgcctatttctgcttgtctactgtgacagtcaacctgagg
aagatctcggacccaccatctctttctgaatcttcctgcagaggatagtc
ttagcctctgtgcagagtgctggtgagccaacctgtcatgggtgaccttc
agtttataagctagggctgacccttgacacacagcttagctttttcgctc
tcaagaatgttctgggggccctggtgctaagaggcttctgttgcccacag
caagtgacccattagcactcctttcttttttcacccccctctgtctcctt
tggtcagtccctgcttctccttcctggcaaatgcttgcacatagatgacc
tgttgctgaactctcctgtcttgactggttctaggaacaccaagcaaaga
cagccttactcttcattagactatgctgagctgatgccccattttggatg
agcaacatgatgggagagtgatggagaggtcccctctgttgtttcgttgg
caaaggtctactatctaccatggttggaaataatcacaatggagattaaa
tatccaggaagtgctagtactatccagagccaaccttcacagcaccagaa
gatcatacaagtgccaagccctctcctctccctggagcagactgtatctc
ctcagggacaaaggccacacctaaggaaagtccctaacacactgcatttg
gttgagactctggagagcctgccaggctgttctggagactggggtatggc
gtccaggttctcatccaagacactcagtcttgaaggaagaacagatagtt
taaatgggaagtctcaaaattctcctaattgattcgaagaccattaagtt
ggttctaacagtatctgtatgttgtcacagcactctggtgataggaggct
cagggcctgcttttcaggcaaatgcaatatcgtctgacctgttaattttc
ttttccggtatattatttggggtgtg
gaattctttcatcatccttgccagtgaaatgcaagcaaaatcaagacgta
tgcataaaccaatggtgtctctaggttccaagacagttctctgttgtaga
tcccataggaggagacccacagaagtccagggtcaggaaataccagatgt
agccagaaactttaaaggaaaaaaagatcttgatttataaaaaggggtga
tatgcagacaggggagtcatttgtgtgcttagataaggttcctgaatata
tcaactccaaccagaatttgaacataagtaagtgctacatgaagagtcca
gtagaaacctctacatcaaacttttcctttaataaccagaaggaagagga
ataaacacacacacacacacacacacacacactcagccttgatagagtga
acaaggatttatcaataatttggttccatgtaagttaaagaaggaatcag
catttcaatgtctacacattttttgttgcttttgttgcgagggatggagt
ctcaatggattgccttgtatttagtgcaactaagcatcttgatgaagttc
tttttgacttacaaaggtagcccaggagcccttgttgagatcaacactgg
aaattaaactgttcttcatgatgaaatagtacaaatcttgaagattcttt
tgtaaaagagctaaagaaagactcatatttaaaaataaaataaaaacaag
gaaagaagattttcagcttctcggcctgggataaggttctcctcagaggt
tatttgccaagatctaggaaaacatctacctgcaacagctggagaagaca
tgctcacatctggcaagtagaataggcattctgcccaccattctttggtt
catgggactgtcccacattaaaacactcactccttctgaaaggccagtag
tgcagagatgtaaaatctatctcagaagacagaaagacctgctcatatcc
agagatgggataagaaaaaaaaaagaagttctagtgagcagatgacccag
aaatagaaatgatgtttctcatgatttatgtgctaaaagtgctaagctcc
tctgtctctccaagtgatgtcatgttcactacttgcctgggttctgaata
tgaggaagaaactccctcatgagacgaacccggacaccattgcacactgc
ctgcatagtatagaattaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55138259_55139394
seq2: B6Ng01-151M09.b_42_1167 (reverse)

seq1  CACACCC--AAAAATATACAGGAAAAGAAAATCTAACAGCTCAGAAACGA  48
      |||||||  || ||||||| |||||||||||| |||||| ||||  ||||
seq2  CACACCCCAAATAATATACCGGAAAAGAAAAT-TAACAGGTCAG--ACGA  47

seq1  TATTGCATTTGCTTGAAAAGCCAAGGGCCTGGAGCCTCCCTATCACCAGA  98
      |||||||||||| ||||||||  ||| ||| |||||| ||||||||||||
seq2  TATTGCATTTGCCTGAAAAGC--AGGCCCT-GAGCCT-CCTATCACCAGA  93

seq1  GTGCTGTGACAACATACAGATCCTGTATAGAACC-ACTTAATGGTCTGTC  147
      ||||||||||||||||||||| |||| ||||||| |||||||||||| ||
seq2  GTGCTGTGACAACATACAGATACTGT-TAGAACCAACTTAATGGTCT-TC  141

seq1  GAATTCAATTAGGGGAAATTTTGAGACTTCCCATTTAAACTATCTGTTCT  197
      ||| ||||||||| | ||||||||||||||||||||||||||||||||||
seq2  GAA-TCAATTAGGAG-AATTTTGAGACTTCCCATTTAAACTATCTGTTCT  189

seq1  TCCTTCAAGACTGAGTGTCTTGGATGAGAACCTGGACGCCATACCCCAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGACTGAGTGTCTTGGATGAGAACCTGGACGCCATACCCCAGT  239

seq1  CTCCAGAACAGCCTGGCAGGCTCTCCAGAGTCTCAACCAAATGCAGTGTT  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCCAGAACAGCCTGGCAGGCTCTCCAGAGTCTCAACCAAATGCAGTG-T  288

seq1  GTTAGGGACTTTCCTTAGGTGTGGCCTTTGTCCCTGAGGAGATACAGTCC  347
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTAGGGACTTTCCTTAGGTGTGGCCTTTGTCCCTGAGGAGATACAGT-C  337

seq1  TGCTCCAGGGAGAGGAGAGGGCTTGGCACTTGTATGATCTTCTGGTGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGGAGAGGAGAGGGCTTGGCACTTGTATGATCTTCTGGTGCTG  387

seq1  TGAAGGTTGGCTCTGGATAGTACTAGCACTTCCTGGATATTTAATCTCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTGGCTCTGGATAGTACTAGCACTTCCTGGATATTTAATCTCCA  437

seq1  TTGTGATTATTTCCAACCATGGTAGATAGTAGACCTTTGCCAACGAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTATTTCCAACCATGGTAGATAGTAGACCTTTGCCAACGAAACA  487

seq1  ACAGAGGGGACCTCTCCATCACTCTCCCATCATGTTGCTCATCCAAAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGGACCTCTCCATCACTCTCCCATCATGTTGCTCATCCAAAATG  537

seq1  GGGCATCAGCTCAGCATAGTCTAATGAAGAGTAAGGCTGTCTTTGCTTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCAGCTCAGCATAGTCTAATGAAGAGTAAGGCTGTCTTTGCTTGG  587

seq1  TGTTCCTAGAACCAGTCAAGACAGGAGAGTTCAGCAACAGGTCATCTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAGAACCAGTCAAGACAGGAGAGTTCAGCAACAGGTCATCTATG  637

seq1  TGCAAGCATTTGCCAGGAAGGAGAAGCAGGGACTGACCAAAGGAGACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCATTTGCCAGGAAGGAGAAGCAGGGACTGACCAAAGGAGACAGA  687

seq1  GGGGGGTGAAAAAAGAAAGGAGTGCTAATGGGTCACTTGCTGTGGGCAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTGAAAAAAGAAAGGAGTGCTAATGGGTCACTTGCTGTGGGCAAC  737

seq1  AGAAGCCTCTTAGCACCAGGGCCCCCAGAACATTCTTGAGAGCGAAAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTCTTAGCACCAGGGCCCCCAGAACATTCTTGAGAGCGAAAAAG  787

seq1  CTAAGCTGTGTGTCAAGGGTCAGCCCTAGCTTATAAACTGAAGGTCACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGTGTGTCAAGGGTCAGCCCTAGCTTATAAACTGAAGGTCACCC  837

seq1  ATGACAGGTTGGCTCACCAGCACTCTGCACAGAGGCTAAGACTATCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGTTGGCTCACCAGCACTCTGCACAGAGGCTAAGACTATCCTCT  887

seq1  GCAGGAAGATTCAGAAAGAGATGGTGGGTCCGAGATCTTCCTCAGGTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGATTCAGAAAGAGATGGTGGGTCCGAGATCTTCCTCAGGTTGA  937

seq1  CTGTCACAGTAGACAAGCAGAAATAGGCAAGGGACCTTCCGAATCCACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGTAGACAAGCAGAAATAGGCAAGGGACCTTCCGAATCCACTG  987

seq1  TCAAAACCTGCCTCAAGAAAACCCAGTATAACAAAAGCAGCTCACCTTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTGCCTCAAGAAAACCCAGTATAACAAAAGCAGCTCACCTTCA  1037

seq1  CGCTGGAAGTAAATTGTACTTCTGGGGCGCTCTAAAGGACTCGTCTGGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGAAGTAAATTGTACTTCTGGGGCGCTCTAAAGGACTCGTCTGGCA  1087

seq1  CTTACGTTTATTAGCTCCAACTTATAAAAGGGAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTTTATTAGCTCCAACTTATAAAAGGGAGAATTC  1126

seq1: chr19_54968753_54969966
seq2: B6Ng01-151M09.g_65_1234

seq1  GAATTCTTTCATCATCCTTGCCAGTGAAATGCAAGCAAAATCAAGACGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATCATCCTTGCCAGTGAAATGCAAGCAAAATCAAGACGTA  50

seq1  TGCATAAACCAATGGTGTCTCTAGGTTCCAAGACAGTTCTCTGTTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAACCAATGGTGTCTCTAGGTTCCAAGACAGTTCTCTGTTGTAGA  100

seq1  TCCCATAGGAGGAGACCCACAGAAGTCCAGGGTCAGGAAATACCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGGAGGAGACCCACAGAAGTCCAGGGTCAGGAAATACCAGATGT  150

seq1  AGCCAGAAACTTTAAAGGAAAAAAAGATCTTGATTTATAAAAAGGGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAACTTTAAAGGAAAAAAAGATCTTGATTTATAAAAAGGGGTGA  200

seq1  TATGCAGACAGGGGAGTCATTTGTGTGCTTAGATAAGGTTCCTGAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGACAGGGGAGTCATTTGTGTGCTTAGATAAGGTTCCTGAATATA  250

seq1  TCAACTCCAACCAGAATTTGAACATAAGTAAGTGCTACATGAAGAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCAACCAGAATTTGAACATAAGTAAGTGCTACATGAAGAGTCCA  300

seq1  GTAGAAACCTCTACATCAAACTTTTCCTTTAATAACCAGAAGGAAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACCTCTACATCAAACTTTTCCTTTAATAACCAGAAGGAAGAGGA  350

seq1  ATAAACACACACACACACACACACACACACACTCAGCCTTGATAGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACACACACACACACACACACACACACTCAGCCTTGATAGAGTGA  400

seq1  ACAAGGATTTATCAATAATTTGGTTCCATGTAAGTTAAAGAAGGAATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATTTATCAATAATTTGGTTCCATGTAAGTTAAAGAAGGAATCAG  450

seq1  CATTTCAATGTCTACACATTTTTTGTTGCTTTTGTTGCGAGGGATGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATGTCTACACATTTTTTGTTGCTTTTGTTGCGAGGGATGGAGT  500

seq1  CTCAATGGATTGCCTTGTATTTAGTGCAACTAAGCATCTTGATGAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGATTGCCTTGTATTTAGTGCAACTAAGCATCTTGATGAAGTTC  550

seq1  TTTTTGACTTACAAAGGTAGCCCAGGAGCCCTTGTTGAGATCAACACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTTACAAAGGTAGCCCAGGAGCCCTTGTTGAGATCAACACTGG  600

seq1  AAATTAAACTGTTCTTCATGATGAAATAGTACAAATCTTGAAGATTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTGTTCTTCATGATGAAATAGTACAAATCTTGAAGATTCTTT  650

seq1  TGTAAAAGAGCTAAAGAAAGACTCATATTTAAAAATAAAATAAAAACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGAGCTAAAGAAAGACTCATATTTAAAAATAAAATAAAAACAAG  700

seq1  GAAAGAAGATTTTCAGCTTCTCGGCCTGGGATAAGGTTCTCCTCAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGATTTTCAGCTTCTCGGCCTGGGATAAGGTTCTCCTCAGAGGT  750

seq1  TATTTGCCAAGATCTAGGAAAACATCTACCTGCAACAGCTGGAGAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAAGATCTAGGAAAACATCTACCTGCAACAGCTGGAGAAGACA  800

seq1  TGCTCACATCTGGCAAGTAGAATAGGCATTCTGCCCACCATTCTTTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATCTGGCAAGTAGAATAGGCATTCTGCCCACCATTCTTTGGTT  850

seq1  CATGGGACTGTCCCACATTAAAACACTCACTCCTTCTGAAAGGCCAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACTGTCCCACATTAAAACACTCACTCCTTCTGAAAGGCCAGTAG  900

seq1  TGCAGAGATGTAAAAACCTATCTCCAGAAGGACAGAAAGACCTGCTCAAT  950
      ||||||||||| |||| |||||| ||||| ||||||||||||||||| ||
seq2  TGCAGAGATGT-AAAATCTATCT-CAGAA-GACAGAAAGACCTGCTC-AT  946

seq1  ATCCAGGAGATGGGGATTAAAGAAAAAAAAAAAGGAAGGTTCTAGTGAGC  1000
      ||||| ||||| |||||  |||||||||||||  ||| ||||||||||||
seq2  ATCCA-GAGAT-GGGAT--AAGAAAAAAAAAA--GAA-GTTCTAGTGAGC  989

seq1  AAGAATGGACCCAGAAATAGAAATGATGTTTCCTCATGGATTTTATGTGC  1050
       |||   |||||||||||||||||||||||| ||||||   |||||||||
seq2  -AGA--TGACCCAGAAATAGAAATGATGTTT-CTCATG--ATTTATGTGC  1033

seq1  TTAAAAGTGCTAAGCTCTCTCTGTCCTCTTCCCCAAAGTGAATGTCTATT  1100
       |||||||||||||||| |||||| ||||    | ||||| |||||   |
seq2  -TAAAAGTGCTAAGCTC-CTCTGT-CTCT----CCAAGTG-ATGTC--AT  1073

seq1  GTCCAACTACCTTGTGCTGTGGTGTTCTAGATAATGGAGGAAGAGAAACT  1150
      || | |||| ||||  ||   | |||||  |||   |||||  |||||||
seq2  GTTC-ACTA-CTTG-CCT---GGGTTCTGAATA--TGAGGA--AGAAACT  1113

seq1  CCCTCCATGGAGGAGCAGACACGGGACAACAATATGCA-ACTGCTGGCAT  1199
      |||||     | |||  ||  | ||||| ||   |||| |||||  ||||
seq2  CCCTC-----ATGAGACGAACCCGGACACCA--TTGCACACTGCCTGCAT  1156

seq1  AGTATTAGGATTACA  1214
      |||| ||| ||||||
seq2  AGTA-TAGAATTACA  1170