BAC Information

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BAC

Clone NameB6Ng01-152E06
Chromosome19 (Build37)
Map Location 45,474,110 - 45,598,151
singlet/doubletdoublet
Overlap geneBtrc, EG627889
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E06.bB6Ng01-152E06.g
ACCDH947881DH947882
length983454
definitionDH947881|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E06, 5' end.DH947882|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,597,546 - 45,598,151)(45,474,110 - 45,474,569)
sequence
gaattcagggcaatcctcctgcctcagtctcttgagtgctgggattacaa
gtgtgagccatcacccctggctttactttcactctctccgagtagtttct
ttgtttgacctcactgagcctggacccgaacctaagctgatggtcaggaa
gcttcaataatcttcccacgtctgtcctggaaagtgctggagtcacaggt
atgtgaggagacatacacttctcttctcttttttccttcctcttgaaggt
gggaccatgtttatttatagtgagggacacttttgttacctagacatgta
tgtagatggccaaaatgtttacagaggaagatggatgcagcctcttatag
gggcataaatgacctcagtagtctgcaaggaaatctgggaagtgtagtct
ttcagcaggaaactaccattcctaactctgagaggatgtgggcagggtgt
tttctgttgagaagggtcctctacagggatagctctggatctattggaga
ggtgattcctctggtcaggtagcagggtgagtcttaccttgattagctgc
aatggatcaggcaattagcaccctctattcctgaagagtcttggaaaata
attattggaaggctataaacaaatgatttggttacggaagaaaacaactt
ttctgggaaggtcgaaagagaaggagaaacaaaagcaggagaaatggagg
gggctggtgaggaagtgggcatagacttgtcagggtgagagtgacaggtc
ccactgccaggatgctgcaccacagtgagcctgcggaagcagtggggagc
gacagagcatctgaggaagggaacaaacaggggaaaacaggactagtgta
cagaattctatctggcccagtggaggggatgaaggtccttgtagccagct
tctccataacaactcaaagttttttaaacagatgtattgggaataaatgg
agctgtgtaggtgagggtcattgggagagcttg
actatctcctgtttctgcccctccccctcttctctcctctctctcttgtt
ctccttcccttcttcactctctcccagtccttgctggcctggaacttagt
atgagatctgcctgcttttgcctcctgagtcctgtgctgaaattaaaggt
taggacctgacagccttgaactttttgaggggaggaggattaggttctaa
ggcaaggtctcactatgtagctcttgctgtcctgttctcaaactgacacg
atttgcctctgtatccccaattgctaagattaaagacgtgtgcttatacg
gctaggtaacttttgatccctgtcactccactttgaagtgctggtattat
gggcatgtactacaacccgctagctagcttgcttgtttgcttgcttgctt
gcttgcttgcttgcttgcttgcttgcttgcatccttccttccttccttcc
ttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45597546_45598151
seq2: B6Ng01-152E06.b_46_651 (reverse)

seq1  AATAATTATTTTCCAAGACTCTTCAGGAATAGAGGGTGCTAATTGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATTTTCCAAGACTCTTCAGGAATAGAGGGTGCTAATTGCCTGA  50

seq1  TCCATTGCAGCTAATCAAGGTAAGACTCACCCTGCTACCTGACCAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCAGCTAATCAAGGTAAGACTCACCCTGCTACCTGACCAGAGGA  100

seq1  ATCACCTCTCCAATAGATCCAGAGCTATCCCTGTAGAGGACCCTTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCTCCAATAGATCCAGAGCTATCCCTGTAGAGGACCCTTCTCAA  150

seq1  CAGAAAACACCCTGCCCACATCCTCTCAGAGTTAGGAATGGTAGTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACACCCTGCCCACATCCTCTCAGAGTTAGGAATGGTAGTTTCCT  200

seq1  GCTGAAAGACTACACTTCCCAGATTTCCTTGCAGACTACTGAGGTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGACTACACTTCCCAGATTTCCTTGCAGACTACTGAGGTCATTT  250

seq1  ATGCCCCTATAAGAGGCTGCATCCATCTTCCTCTGTAAACATTTTGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTATAAGAGGCTGCATCCATCTTCCTCTGTAAACATTTTGGCCA  300

seq1  TCTACATACATGTCTAGGTAACAAAAGTGTCCCTCACTATAAATAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATACATGTCTAGGTAACAAAAGTGTCCCTCACTATAAATAAACAT  350

seq1  GGTCCCACCTTCAAGAGGAAGGAAAAAAGAGAAGAGAAGTGTATGTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACCTTCAAGAGGAAGGAAAAAAGAGAAGAGAAGTGTATGTCTCC  400

seq1  TCACATACCTGTGACTCCAGCACTTTCCAGGACAGACGTGGGAAGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACCTGTGACTCCAGCACTTTCCAGGACAGACGTGGGAAGATTAT  450

seq1  TGAAGCTTCCTGACCATCAGCTTAGGTTCGGGTCCAGGCTCAGTGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTCCTGACCATCAGCTTAGGTTCGGGTCCAGGCTCAGTGAGGTC  500

seq1  AAACAAAGAAACTACTCGGAGAGAGTGAAAGTAAAGCCAGGGGTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAACTACTCGGAGAGAGTGAAAGTAAAGCCAGGGGTGATGGC  550

seq1  TCACACTTGTAATCCCAGCACTCAAGAGACTGAGGCAGGAGGATTGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTGTAATCCCAGCACTCAAGAGACTGAGGCAGGAGGATTGCCCT  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606

seq1: chr19_45474110_45474569
seq2: B6Ng01-152E06.g_66_525

seq1  GAATTCACTATCTCCTGTTTCTGCCCCTCCCCCTCTTCTCTCCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTCCTGTTTCTGCCCCTCCCCCTCTTCTCTCCTCTCTCT  50

seq1  CTTGTTCTCCTTCCCTTCTTCACTCTCTCCCAGTCCTTGCTGGCCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTCCTTCCCTTCTTCACTCTCTCCCAGTCCTTGCTGGCCTGGAA  100

seq1  CTTAGTATGAGATCTGCCTGCTTTTGCCTCCTGAGTCCTGTGCTGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATGAGATCTGCCTGCTTTTGCCTCCTGAGTCCTGTGCTGAAATT  150

seq1  AAAGGTTAGGACCTGACAGCCTTGAACTTTTTGAGGGGAGGAGGATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTAGGACCTGACAGCCTTGAACTTTTTGAGGGGAGGAGGATTAGG  200

seq1  TTCTAAGGCAAGGTCTCACTATGTAGCTCTTGCTGTCCTGTTCTCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGCAAGGTCTCACTATGTAGCTCTTGCTGTCCTGTTCTCAAACT  250

seq1  GACACGATTTGCCTCTGTATCCCCAATTGCTAAGATTAAAGACGTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGATTTGCCTCTGTATCCCCAATTGCTAAGATTAAAGACGTGTGCT  300

seq1  TATACGGCTAGGTAACTTTTGATCCCTGTCACTCCACTTTGAAGTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGGCTAGGTAACTTTTGATCCCTGTCACTCCACTTTGAAGTGCTGG  350

seq1  TATTATGGGCATGTACTACAACCCGCTAGCTAGCTTGCTTGTTTGCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGGCATGTACTACAACCCGCTAGCTAGCTTGCTTGTTTGCTTGC  400

seq1  TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCATCCTTCCTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCATCCTTCCTTCCTT  450

seq1  CCTTCCTTCC  460
      ||||||||||
seq2  CCTTCCTTCC  460