BAC Information

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BAC

Clone NameB6Ng01-153E22
Chromosome19 (Build37)
Map Location 55,493,424 - 55,620,190
singlet/doubletdoublet
Overlap geneVti1a, LOC100043479
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneTcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153E22.bB6Ng01-153E22.g
ACCDH948660DH948661
length1,0211,128
definitionDH948660|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E22, 5' end.DH948661|Mus musculus domesticus DNA, BAC clone: B6Ng01-153E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,493,424 - 55,494,443)(55,619,049 - 55,620,190)
sequence
gaattcaaggaagacaatgccagcattgttgtgctagataggctccgcat
ggaaggtgtgggtggggctgggcactgttgaaggcatcccacacttaaat
cctcagaagcagtttgtttttgcagtctgcacttgtttgcttattttatc
tctttatcttgaacggaaaaactcgaggagacttgacatcataagaagag
aattgtcattaaagaaagagccatcgtactaattgtaaacagcccaggga
gtccatttgtaaaaggagctttaagtcaattaaataaataaataaataaa
taggaaatggtctccactgtttaatggggcaatgacatgtattttaaccg
gattgctgtgaaatgaaaacattccatttcaccatgacatgagaccagtg
aggtgctttccacaccagtcatgcttctggttcatccagggacggagtgc
agtcacaccagtggtggagtgcgcggtgggaatggtcctgggcctgaggg
agcatgcccttagcccaaagcataaggactggtgttttatacagtcccgc
tagccaaaaagctatgattggaagccacgctcagcacaaagctcattgcc
tccagagcaagcgagtcatgccatgccatgcagttttccctgtgacacac
agtaggctccttgccttcctctgctttcgtggtcagttccctacacccag
tgaccctgcaggattctggatgtactacagtgtaagttaactgggaaaat
accaaacagtggcctctgactagcttcattattagacatcagagaacaat
gacatttgcatgtggagtaaagacttgcatcctgaactccccacccccaa
ggaaaggagacttacagatctgctagaattcttaacttgggtgcagctag
tagagggcaaaacataaaggcaagaaatgcagagtgttgtctcactctgc
tgtccatgtggctttttcccggttttcttggaagaatcctcctattttct
atcaaggctcaaaaaaaaaat
gaattccagcactgttgcaagaccgaacggtgtgcagataccacctgctg
acttgtgaccaggaaagataaagagtagcagtcccagaacaaggcctggt
ctagagtcttctgttcactacgtaggcggccttggtcagatttgcttacc
ccaggttcccatacacacgaggagagaagcaggatattttacatggtatc
tattaaaacaaaacaacacgcgtcaagctcccagcaggatattttgttca
tttgactgaagggtattttaaccagtgtggtttttaaaaaattagtgaaa
atctctttgaaaagtctacattgtcttctaaaacagtgggcttcacctac
atggagacagcgttccagtcagcgtcagttctgcatgggacccacgtaca
cctcctcttaggctttcctgtctttctgtacgtaggctctctggtctcag
cctcattgtgctgcccaggctgcctgcctctcagtgcgtaaccttcctgt
ctctgtggcccagctgctggcattacaggtatatgtccttgtgtttggcc
agataagccaatcttcaaccgtgtgtgattccagaccactagtaaccgtt
ttactaacaaaattggcaaaataaagttttagaagtaaattgattcctgg
gaacaatttggttattctgtaattcccaaaagcttctactgtaaaaataa
catctttagtctgtgtactcatttgaaagtccctccctgtgaggggtgca
tctgtgtccaacttggttctgtaactacattcctgaggtcagggaacaga
atttgtaaaaactcagagaaacggatacatctccaaaggagaatacaaat
ggcagcaaacacaagagaagatgcttgccatcatttagccattggagaat
gccagagcaaccacgaggcttccccatctgtgccaagcaaccctaacaga
aagaaagacaataacagtggtgggaagaaattcaagagtcagagcccaca
cacagctgttgggcgtgaaacacaaacatccctcagcaacaaacgtggat
ttcctcaaagcaaaccgaggaggtaccctcttacttagaatctttcctag
ggtcacagaacgggaaatgcaacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55493424_55494443
seq2: B6Ng01-153E22.b_44_1064

seq1  GAATTCAAGGAAGACAATGCCAGCATTGTTGTGCTAGATAGGCTCCGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAGACAATGCCAGCATTGTTGTGCTAGATAGGCTCCGCAT  50

seq1  GGAAGGTGTGGGTGGGGCTGGGCACTGTTGAAGGCATCCCACACTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGTGGGTGGGGCTGGGCACTGTTGAAGGCATCCCACACTTAAAT  100

seq1  CCTCAGAAGCAGTTTGTTTTTGCAGTCTGCACTTGTTTGCTTATTTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGCAGTTTGTTTTTGCAGTCTGCACTTGTTTGCTTATTTTATC  150

seq1  TCTTTATCTTGAACGGAAAAACTCGAGGAGACTTGACATCATAAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTTGAACGGAAAAACTCGAGGAGACTTGACATCATAAGAAGAG  200

seq1  AATTGTCATTAAAGAAAGAGCCATCGTACTAATTGTAAACAGCCCAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCATTAAAGAAAGAGCCATCGTACTAATTGTAAACAGCCCAGGGA  250

seq1  GTCCATTTGTAAAAGGAGCTTTAAGTCAATTAAATAAATAAATAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGTAAAAGGAGCTTTAAGTCAATTAAATAAATAAATAAATAAA  300

seq1  TAGGAAATGGTCTCCACTGTTTAATGGGGCAATGACATGTATTTTAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGGTCTCCACTGTTTAATGGGGCAATGACATGTATTTTAACCG  350

seq1  GATTGCTGTGAAATGAAAACATTCCATTTCACCATGACATGAGACCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGTGAAATGAAAACATTCCATTTCACCATGACATGAGACCAGTG  400

seq1  AGGTGCTTTCCACACCAGTCATGCTTCTGGTTCATCCAGGGACGGAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTTCCACACCAGTCATGCTTCTGGTTCATCCAGGGACGGAGTGC  450

seq1  AGTCACACCAGTGGTGGAGTGCGCGGTGGGAATGGTCCTGGGCCTGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACCAGTGGTGGAGTGCGCGGTGGGAATGGTCCTGGGCCTGAGGG  500

seq1  AGCATGCCCTTAGCCCAAAGCATAAGGACTGGTGTTTTATACAGTCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCCTTAGCCCAAAGCATAAGGACTGGTGTTTTATACAGTCCCGC  550

seq1  TAGCCAAAAAGCTATGATTGGAAGCCACGCTCAGCACAAAGCTCATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAAAGCTATGATTGGAAGCCACGCTCAGCACAAAGCTCATTGCC  600

seq1  TCCAGAGCAAGCGAGTCATGCCATGCCATGCAGTTTTCCCTGTGACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCAAGCGAGTCATGCCATGCCATGCAGTTTTCCCTGTGACACAC  650

seq1  AGTAGGCTCCTTGCCTTCCTCTGCTTTCGTGGTCAGTTCCCTACACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTCCTTGCCTTCCTCTGCTTTCGTGGTCAGTTCCCTACACCCAG  700

seq1  TGACCCTGCAGGATTCTGGATGTACTACAGTGTAAGTTAACTGGGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGCAGGATTCTGGATGTACTACAGTGTAAGTTAACTGGGAAAAT  750

seq1  ACCAAACAGTGGCCTCTGACTAGCTTCATTATTAGACATCAGAGAACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGTGGCCTCTGACTAGCTTCATTATTAGACATCAGAGAACAAT  800

seq1  GACATTTGCATGTGGAGTAAAGACTTGCATCCTGAACTCCCCACCCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGCATGTGGAGTAAAGACTTGCATCCTGAACTCCCCACCCCCAA  850

seq1  GGAAAGGAGACTTACAGATCTGCTAGAATTCTTAACTTGGGTGCAGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGACTTACAGATCTGCTAGAATTCTTAACTTGGGTGCAGCTAG  900

seq1  TAGAGGGC-AAACATAAAGCCAAGAAATGCAGAGTGTATGTCTCACTCTG  949
      |||||||| |||||||||| ||||||||||||||||| ||||||||||||
seq2  TAGAGGGCAAAACATAAAGGCAAGAAATGCAGAGTGT-TGTCTCACTCTG  949

seq1  CTGTCCATGTGGCTTTTT-CCGGTTTTCTTGGAAGATTCTCCATATTTTC  998
      |||||||||||||||||| ||||||||||||||||| ||  | |||||||
seq2  CTGTCCATGTGGCTTTTTCCCGGTTTTCTTGGAAGAATCCTCCTATTTTC  999

seq1  TATCAAAGCTCAAAAATAAAAT  1020
      |||||| ||||||||| |||||
seq2  TATCAAGGCTCAAAAAAAAAAT  1021

seq1: chr19_55619049_55620190
seq2: B6Ng01-153E22.g_68_1195 (reverse)

seq1  TGTATGTTTGCATTTCCCCTTTCTGTGTACCTAAGAATAGAATCCTAAGT  50
      |||||| |||||||| ||| |||||||  |||| ||| || || ||||||
seq2  TGTATG-TTGCATTT-CCCGTTCTGTGACCCTAGGAA-AG-ATTCTAAGT  46

seq1  GATAACGGTACCTCCTCTGCTTGACTTTTGAGGAAATGCCAGCTGTG-TG  99
       |  | ||||||||||| | |||   ||||||||||| |||  | || ||
seq2  -AAGAGGGTACCTCCTCGGTTTG--CTTTGAGGAAAT-CCACGTTTGTTG  92

seq1  CTGAGGGGAGTGTTGTGGTTCACGGCCCAGCAGCTGTGTGTTGGGCTCTG  149
      |||||||  || ||||| ||||| ||||| |||||||||| |||||||||
seq2  CTGAGGGATGT-TTGTGTTTCAC-GCCCAACAGCTGTGTG-TGGGCTCTG  139

seq1  ACTTCCTGACTTCCTTCCCACCACTTGTTATTGTCTGTCTTTCTGTTAGG  199
      || || ||| || ||||||||||| ||||||||||| |||||||||||||
seq2  AC-TCTTGAATTTCTTCCCACCAC-TGTTATTGTCTTTCTTTCTGTTAGG  187

seq1  GTTGCTTGGCACAGATGGGGAAGCCTCGTGGTTTGCTCTGGCATTCTCCA  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTGCTTGGCACAGATGGGGAAGCCTCGTGG-TTGCTCTGGCATTCTCCA  236

seq1  ATGGCTAAATGATGGCAAGCATCTTCTCTTGTGTTTGCTGCCATTTGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGGCTAAATGATGGCAAGCATCTTCTCTTGTGTTTGCTGCCATTTGTA-  285

seq1  TTCTCCTTTGGAGATGTATCCGTTTCTCTGAGTTTTTACAAATTCTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTGGAGATGTATCCGTTTCTCTGAGTTTTTACAAATTCTGTTC  335

seq1  CCTGACCTCAGGAATGTAGTTACAGAACCAAGTTGGACACAGATGCACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCAGGAATGTAGTTACAGAACCAAGTTGGACACAGATGCACCC  385

seq1  CTCACAGGGAGGGACTTTCAAATGAGTACACAGACTAAAGATGTTATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGGAGGGACTTTCAAATGAGTACACAGACTAAAGATGTTATTTT  435

seq1  TACAGTAGAAGCTTTTGGGAATTACAGAATAACCAAATTGTTCCCAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGAAGCTTTTGGGAATTACAGAATAACCAAATTGTTCCCAGGAA  485

seq1  TCAATTTACTTCTAAAACTTTATTTTGCCAATTTTGTTAGTAAAACGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTACTTCTAAAACTTTATTTTGCCAATTTTGTTAGTAAAACGGTT  535

seq1  ACTAGTGGTCTGGAATCACACACGGTTGAAGATTGGCTTATCTGGCCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGTCTGGAATCACACACGGTTGAAGATTGGCTTATCTGGCCAAA  585

seq1  CACAAGGACATATACCTGTAATGCCAGCAGCTGGGCCACAGAGACAGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGACATATACCTGTAATGCCAGCAGCTGGGCCACAGAGACAGGAA  635

seq1  GGTTACGCACTGAGAGGCAGGCAGCCTGGGCAGCACAATGAGGCTGAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACGCACTGAGAGGCAGGCAGCCTGGGCAGCACAATGAGGCTGAGAC  685

seq1  CAGAGAGCCTACGTACAGAAAGACAGGAAAGCCTAAGAGGAGGTGTACGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCTACGTACAGAAAGACAGGAAAGCCTAAGAGGAGGTGTACGT  735

seq1  GGGTCCCATGCAGAACTGACGCTGACTGGAACGCTGTCTCCATGTAGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCATGCAGAACTGACGCTGACTGGAACGCTGTCTCCATGTAGGTG  785

seq1  AAGCCCACTGTTTTAGAAGACAATGTAGACTTTTCAAAGAGATTTTCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACTGTTTTAGAAGACAATGTAGACTTTTCAAAGAGATTTTCACT  835

seq1  AATTTTTTAAAAACCACACTGGTTAAAATACCCTTCAGTCAAATGAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAAAAACCACACTGGTTAAAATACCCTTCAGTCAAATGAACAA  885

seq1  AATATCCTGCTGGGAGCTTGACGCGTGTTGTTTTGTTTTAATAGATACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTGCTGGGAGCTTGACGCGTGTTGTTTTGTTTTAATAGATACCA  935

seq1  TGTAAAATATCCTGCTTCTCTCCTCGTGTGTATGGGAACCTGGGGTAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATATCCTGCTTCTCTCCTCGTGTGTATGGGAACCTGGGGTAAGC  985

seq1  AAATCTGACCAAGGCCGCCTACGTAGTGAACAGAAGACTCTAGACCAGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGACCAAGGCCGCCTACGTAGTGAACAGAAGACTCTAGACCAGGC  1035

seq1  CTTGTTCTGGGACTGCTACTCTTTATCTTTCCTGGTCACAAGTCAGCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGGGACTGCTACTCTTTATCTTTCCTGGTCACAAGTCAGCAGG  1085

seq1  TGGTATCTGCACACCGTTCGGTCTTGCAACAGTGCTGGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTGCACACCGTTCGGTCTTGCAACAGTGCTGGAATTC  1128