BAC Information

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BAC

Clone NameB6Ng01-154M07
Chromosome19 (Build37)
Map Location 6,945,866 - 7,130,795
singlet/doubletdoublet
Overlap genePrdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
Upstream genePola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88
Downstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154M07.bB6Ng01-154M07.g
ACCDH949725DH949726
length2191,099
definitionDH949725|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M07, 5' end.DH949726|Mus musculus domesticus DNA, BAC clone: B6Ng01-154M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,130,579 - 7,130,795)(6,945,866 - 6,946,980)
sequence
cacagcagctcacaagacattacgtttagatttgacaggaagaaacctag
gtgtcaaataggcatggtaaggcatacttacaatccagcattccagaggg
tgagggcggaggatcttaggaaagtttaggatcagcctgacttacaaggc
agccacatagcaagaccctgtctcagtcaataggtcagtctaacaatcaa
tataaaaaagagccgggca
gaattcaaggccaacctggtctatagagtgagctccagggcaggcagggc
tacacagaagagaccctgtctggcaaaaatgaaaccaaaacaaacaacca
aacaagctacgagttatctatcaggtttggcttggtctgggacaagatat
cactgtatagctgggactggcttcagagccaagattctcctgcctcaggt
tgctaattgctggggtcacaggcttgtgtcacccttcccactggtggcag
attttaaaagggctcagttcacattgctgtccagcagagggacccaagag
aagggcaagaagctgagaccatcagacagacaaacggattgtggactcca
ctatgccctccttgggcgcactactaggtctgaacaaggccaggctggga
aaggctgcagccttcagttctcttctggttttgagatttctgcatagcca
tgatccaacaggaaggccagaaggaggggggctctgtgactggggccaga
ggcgtggccaggcagcctcagccacagtgaaactgttcctctctagctga
ttgacctagggtcccccctggtgggatgtggcctgggtgcttccccaccc
tctactcaggtggttcatggcccagattcagaaactcaaaatatgaaaca
gccttgagggctggatggcagctccacagagactctccttcaagccacct
gggggagaaactgttcaggttcagaaatgctcagtgacccatgctgccta
ggtaggaggccagatccagctggaatgtgagtgctctgcccatagcttac
caggtgccaacaactcgcgtgccacccagtgccagctgcagctgcatctg
aaaggagtgaagcccagcccaggcctaccacctgtcaatcagccagacct
tccttcctgtctcccaaagtctcacttctagggcaccttccctgactctc
cccaaggctctaggcatcactaggacaagacctccatctccttctgagcc
tctcaatgactcttcctggagctctgtctgtgaacttcaaagcctgagaa
agccctctctccagccatggtgcaatgcttatccagcacctcaggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7130579_7130795
seq2: B6Ng01-154M07.b_55_273 (reverse)

seq1  TGCCCGGCTCTTTTTTATATTGATTGTTAGACTGACCTATTGACTGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTCTTTTTTATATTGATTGTTAGACTGACCTATTGACTGAGAC  50

seq1  AGGGTCTTGCTATGTGGCTGCCTTGTAAGTCAGGCTGATCCTAAACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTGCTATGTGGCTGCCTTGTAAGTCAGGCTGATCCTAAACTTTC  100

seq1  CTAAGATCCTCCGCCCTCACCCTCTGGAATGCTGGATTGTAAGTATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCCTCCGCCCTCACCCTCTGGAATGCTGGATTGTAAGTATGCCT  150

seq1  TACCATGCCTATTTGACACCTAGGTTTCTTCCTGTCAAATCTCA--CTAA  198
      |||||||||||||||||||||||||||||||||||||||||| |   |||
seq2  TACCATGCCTATTTGACACCTAGGTTTCTTCCTGTCAAATCTAAACGTAA  200

seq1  TGTCTTGTGAGCTGCTGTG  217
      |||||||||||||||||||
seq2  TGTCTTGTGAGCTGCTGTG  219

seq1: chr19_6945866_6946980
seq2: B6Ng01-154M07.g_67_1165

seq1  GAATTCAAGGCCAACCTGGTCTATAGAGTGAGCTCCAGGGCAGGCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAACCTGGTCTATAGAGTGAGCTCCAGGGCAGGCAGGGC  50

seq1  TACACAGAAGAGACCCTGTCTGGCAAAAATGAAACCAAAACAAACAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAGAGACCCTGTCTGGCAAAAATGAAACCAAAACAAACAACCA  100

seq1  AACAAGCTACGAGTTATCTATCAGGTTTGGCTTGGTCTGGGACAAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTACGAGTTATCTATCAGGTTTGGCTTGGTCTGGGACAAGATAT  150

seq1  CACTGTATAGCTGGGACTGGCTTCAGAGCCAAGATTCTCCTGCCTCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTATAGCTGGGACTGGCTTCAGAGCCAAGATTCTCCTGCCTCAGGT  200

seq1  TGCTAATTGCTGGGGTCACAGGCTTGTGTCACCCTTCCCACTGGTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATTGCTGGGGTCACAGGCTTGTGTCACCCTTCCCACTGGTGGCAG  250

seq1  ATTTTAAAAGGGCTCAGTTCACATTGCTGTCCAGCAGAGGGACCCAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGGGCTCAGTTCACATTGCTGTCCAGCAGAGGGACCCAAGAG  300

seq1  AAGGGCAAGAAGCTGAGACCATCAGACAGACAAACGGATTGTGGACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGAAGCTGAGACCATCAGACAGACAAACGGATTGTGGACTCCA  350

seq1  CTATGCCCTCCTTGGGCGCACTACTAGGTCTGAACAAGGCCAGGCTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCTCCTTGGGCGCACTACTAGGTCTGAACAAGGCCAGGCTGGGA  400

seq1  AAGGCTGCAGCCTTCAGTTCTCTTCTGGTTTTGAGATTTCTGCATAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGCAGCCTTCAGTTCTCTTCTGGTTTTGAGATTTCTGCATAGCCA  450

seq1  TGATCCAACAGGAAGGCCAGAAGGAGGGGGGCTCTGTGACTGGGGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAACAGGAAGGCCAGAAGGAGGGGGGCTCTGTGACTGGGGCCAGA  500

seq1  GGCGTGGCCAGGCAGCCTCAGCCACAGTGAAACTGTTCCTCTCTAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGCCAGGCAGCCTCAGCCACAGTGAAACTGTTCCTCTCTAGCTGA  550

seq1  TTGACCTAGGGTCCCCCCTGGTGGGATGTGGCCTGGGTGCTTCCCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAGGGTCCCCCCTGGTGGGATGTGGCCTGGGTGCTTCCCCACCC  600

seq1  TCTACTCAGGTGGTTCATGGCCCAGATTCAGAAACTCAAAATATGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGGTGGTTCATGGCCCAGATTCAGAAACTCAAAATATGAAACA  650

seq1  GCCTTGAGGGCTGGATGGCAGCTCCACAGAGACTCTCCTTCAAGCCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGGGCTGGATGGCAGCTCCACAGAGACTCTCCTTCAAGCCACCT  700

seq1  GGGGGAGAAACTGTTCAGGTTCAGAAATGCTCAGTGACCCATGCTGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAACTGTTCAGGTTCAGAAATGCTCAGTGACCCATGCTGCCTA  750

seq1  GGTAGGAGGCCAGATCCAGCTGGAATGTGAGTGCTCTGCCCATAGCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGCCAGATCCAGCTGGAATGTGAGTGCTCTGCCCATAGCTTAC  800

seq1  CAGGTGCCAACAACTCGCGTGCCACCCAGTGCCAGCTGCAGCTGCATCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCAACAACTCGCGTGCCACCCAGTGCCAGCTGCAGCTGCATCTG  850

seq1  AAAGGAGTGAAGCCCAGCCCAGGCCTACCACCTGTCAATCAGCCAGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTGAAGCCCAGCCCAGGCCTACCACCTGTCAATCAGCCAGACCT  900

seq1  TCCTTCCTGTTCTCCCCAAAGTCTCACTTCTAGGGCACCTTCCCTGACTC  950
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTG-TCT-CCCAAAGTCTCACTTCTAGGGCACCTTCCCTGACTC  948

seq1  TCCCCAAGGCTCTAGGCATCACTAGGACACAGACCTCCATCTCCTTCTGA  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCCAAGGCTCTAGGCATCACTAGGACA-AGACCTCCATCTCCTTCTGA  997

seq1  GCCTTCTCCAATGGCCTCTCCCTGGAAGCTCTGTCTGTGACCTTCAAAGC  1050
      ||| ||| |||| | |||| ||||| |||||||||||||| |||||||| 
seq2  GCC-TCT-CAAT-GACTCTTCCTGG-AGCTCTGTCTGTGAACTTCAAAG-  1042

seq1  CCTGAAGAAAAGGCCCCTCTACCAGGCATGGTGGCACATGCCTTTAATCC  1100
      |||||   |||| || |||| |||| |||||| ||| |||| | |    |
seq2  CCTGA--GAAAGCCCTCTCT-CCAGCCATGGT-GCA-ATGCTTAT----C  1083

seq1  CAGCA-CTCAGGAGGT  1115
      ||||| ||||||||||
seq2  CAGCACCTCAGGAGGT  1099