BAC Information

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BAC

Clone NameB6Ng01-154N04
Chromosome19 (Build37)
Map Location 26,814,078 - 26,986,846
singlet/doubletdoublet
Overlap geneSmarca2, Gm815
Upstream geneEG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N04.bB6Ng01-154N04.g
ACCDH949765DH949766
length1,1701,118
definitionDH949765|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N04, 5' end.DH949766|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,985,663 - 26,986,846)(26,814,078 - 26,815,217)
sequence
gaattccaggacagccagggcgatacagagaaaccctgtctcgaaaaacc
aaaaccaaaacaaaaaacccaaaaactatatagctctgcaataggaaggc
aaattactgaaagtatgaccgttagacgcatattaataaaagttacttat
taataacaaaacgaagtaaacccaatatgaaatgctttgtacaaagttaa
agaccttatcaaaactctagaaagttgcaaattgagtattaaagaaaggt
ttgcttgacccccaaccaacaaacacacagacctgcgtcacagctcatgt
ctgcttcggtctaagggtttccagctgttaatgaatggttggcactggag
aggaagggtgaagactgaggagccatgagctgacacccagcatcctcttc
caacttctctttcttaagtcctgtgtctttgtgtcttagtaactttgcag
ggtagcacttgagaaactcccttgctatgattgtgctttctgtgtctcgg
acactagcgatagattaccttcagggccagcaaagccaatgactccttgg
ataagaatggattgggtgactcttccaattggggatgggaggatctaacc
cagagttatcagcatccatttcagtgctggcatgtttatattctgcttcc
ctgaaagtctttgaactagagtaagaaatattctttcctataggagcttg
cctttatcgactgtctttttcaattctcctctggagggttataaaggtgt
ggaaaaatgccttctaaatgagtatagttttattggatttgaaattttaa
tgtcatgaataactctgggtatatctcaagttgtaaaagatttagaattt
gtggatttttttttcccgtgttgatcccatagaaaatccatgtattttca
tatttaaagggaatattgtgaaattatttctgtaagtaatataaagatca
tagtattgtgtgcatatactggtatcaagcgcacccaactttttttttta
gaaagttaccatccatttcagagtcagtttatgaagatattagtggaaca
caagcaccgaggagaagtatttatcttccagtacacagagctcttctgct
ggttggacacaggaaattgatggcaatgggacgatcatctttgattcagc
agacacatcaagttcctctc
gaattcaaaggccaagcatgttttagatgggagaatggatggatgtaccc
accctcctaggcagagacagaactgtttgcaatgtcaacacagatttatt
aaaagtagggaattgagaattagtcacctactcaaaatggaggccatttt
acagagcaaagatgacacagaggaaaggtccctggatcatgtcagaggcg
acctataggatggctgatgagatagagaagcctctaagctagatagtgga
gggcatgatactcccttgggtgggtcagaaagactggcagcgtaggatgc
agagaggcgaaggaacagtgtgggggaaagcaaaattagaaagggttaga
ggagccaggtggtggtggcggcgcacacatgcctttaatcccagcacttg
ggaggcagaggcaggcagatttctgagttcgaggtcttgaaaaaaccaga
aaccagagagagagagagagagagagagacagagagacagacagagagag
agagacagagagaaaaagggttagaggaggccaatgtgggaaccccgagc
attttgagcaacttttggaaaaacaaaacaaaacaaaacaaaacctgtga
ccttccaagaatactgtgttttcagaaggtcaactcatcagtaactggac
tggaagtctaacagtgaagggaatgtagtcagccatcagcagtgttgtga
ggagacggaaaacctcgtgtttctgacttagcagttgagatagctacaac
aaacacattgcatacaatgtgcacaggtacaggagtttaggcaggcaccc
tcagggagagtagagctctcaaaggtaggagtgagtacagcctgccatgg
gaagacgctggatttgggttcctgtcacttgaagatattcacactacaga
ctactgtcacaaatacctcaagctgtgcatgttataatatagctattttt
catagctctaggaggctatagaccctcttagtccagcagatactgttgat
ggtctgctgctgtcacgggtgctctgtgtatgctctttgtagatggacag
tgcacagtaagagcttgttcttagacactaatctaagcacagaagcctct
gcttctatgaactacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26985663_26986846
seq2: B6Ng01-154N04.b_48_1217 (reverse)

seq1  GAGAGGAACTTTGATGTTGTCTTGGCTTTGAATGTACAAAGGATAGATCG  50
      ||||||||| |||||| |||||  ||  |||||   |||| ||| |||||
seq2  GAGAGGAAC-TTGATG-TGTCT--GC--TGAAT---CAAA-GAT-GATCG  39

seq1  TCCCACTGCCATCAATTTTCCTTGTGTCCACACAGCAGAAGAGCTCTGTG  100
      ||||| ||||||||||||  | ||||||||  ||||||||||||||||||
seq2  TCCCATTGCCATCAATTT--CCTGTGTCCAACCAGCAGAAGAGCTCTGTG  87

seq1  TACCTGGAAGATAAATATACTCTCCTC-GTGCTTTGTGTTTCACTTATAT  149
      || ||||||||||||||   ||||||| |||| ||||||| |||| ||||
seq2  TA-CTGGAAGATAAATA-CTTCTCCTCGGTGC-TTGTGTTCCACTAATAT  134

seq1  CTTCATAAACTGACTCTGAAATGGATGGTAACTTTCTAAAAAAAAAAGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAACTGACTCTGAAATGGATGGTAACTTTCTAAAAAAAAAAGTT  184

seq1  GGGTGCGCTTGATACCAGTATATGCACACAATACTATGATCTTTATATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCGCTTGATACCAGTATATGCACACAATACTATGATCTTTATATTA  234

seq1  CTTACAGAAATAATTTCACAATATTCCCTTTAAATATGAAAATACATGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAAATAATTTCACAATATTCCCTTTAAATATGAAAATACATGGA  284

seq1  TTTTCTATGGGATCAACACGGGAAAAAAAAATCC-CAAATTCTAAATCTT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTCTATGGGATCAACACGGGAAAAAAAAATCCACAAATTCTAAATCTT  334

seq1  TTACAACTTGAGATATACCCAGAGTTATTCATGACATTAAAATTTCAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTGAGATATACCCAGAGTTATTCATGACATTAAAATTTCAAAT  384

seq1  CCAATAAAACTATACTCATTTAGAAGGCATTTTTCCACACCTTTATAACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAACTATACTCATTTAGAAGGCATTTTTCCACACCTTTATAACC  434

seq1  CTCCAGAGGAGAATTGAAAAAGACAGTCGATAAAGGCAAGCTCCTATAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGGAGAATTGAAAAAGACAGTCGATAAAGGCAAGCTCCTATAGG  484

seq1  AAAGAATATTTCTTACTCTAGTTCAAAGACTTTCAGGGAAGCAGAATATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTTCTTACTCTAGTTCAAAGACTTTCAGGGAAGCAGAATATA  534

seq1  AACATGCCAGCACTGAAATGGATGCTGATAACTCTGGGTTAGATCCTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCAGCACTGAAATGGATGCTGATAACTCTGGGTTAGATCCTCCC  584

seq1  ATCCCCAATTGGAAGAGTCACCCAATCCATTCTTATCCAAGGAGTCATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAATTGGAAGAGTCACCCAATCCATTCTTATCCAAGGAGTCATTG  634

seq1  GCTTTGCTGGCCCTGAAGGTAATCTATCGCTAGTGTCCGAGACACAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTGGCCCTGAAGGTAATCTATCGCTAGTGTCCGAGACACAGAAA  684

seq1  GCACAATCATAGCAAGGGAGTTTCTCAAGTGCTACCCTGCAAAGTTACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATCATAGCAAGGGAGTTTCTCAAGTGCTACCCTGCAAAGTTACTA  734

seq1  AGACACAAAGACACAGGACTTAAGAAAGAGAAGTTGGAAGAGGATGCTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAGACACAGGACTTAAGAAAGAGAAGTTGGAAGAGGATGCTGG  784

seq1  GTGTCAGCTCATGGCTCCTCAGTCTTCACCCTTCCTCTCCAGTGCCAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCTCATGGCTCCTCAGTCTTCACCCTTCCTCTCCAGTGCCAACC  834

seq1  ATTCATTAACAGCTGGAAACCCTTAGACCGAAGCAGACATGAGCTGTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAACAGCTGGAAACCCTTAGACCGAAGCAGACATGAGCTGTGAC  884

seq1  GCAGGTCTGTGTGTTTGTTGGTTGGGGGTCAAGCAAACCTTTCTTTAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTGTGTGTTTGTTGGTTGGGGGTCAAGCAAACCTTTCTTTAATA  934

seq1  CTCAATTTGCAACTTTCTAGAGTTTTGATAAGGTCTTTAACTTTGTACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGCAACTTTCTAGAGTTTTGATAAGGTCTTTAACTTTGTACAA  984

seq1  AGCATTTCATATTGGGTTTACTTCGTTTTGTTATTAATAAGTAACTTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCATATTGGGTTTACTTCGTTTTGTTATTAATAAGTAACTTTTA  1034

seq1  TTAATATGCGTCTAACGGTCATACTTTCAGTAATTTGCCTTCCTATTGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGCGTCTAACGGTCATACTTTCAGTAATTTGCCTTCCTATTGCA  1084

seq1  GAGCTATATAGTTTTTGGGTTTTTTGTTTTGGTTTTGGTTTTTCGAGACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATATAGTTTTTGGGTTTTTTGTTTTGGTTTTGGTTTTTCGAGACA  1134

seq1  GGGTTTCTCTGTATCGCCCTGGCTGTCCTGGAATTC  1184
      ||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATCGCCCTGGCTGTCCTGGAATTC  1170

seq1: chr19_26814078_26815217
seq2: B6Ng01-154N04.g_67_1184

seq1  GAATTCAAAGGCCAAGCATGTTTTAGATGGGAGAATGGATGGATGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCCAAGCATGTTTTAGATGGGAGAATGGATGGATGTACCC  50

seq1  ACCCTCCTAGGCAGAGACAGAACTGTTTGCAATGTCAACACAGATTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTAGGCAGAGACAGAACTGTTTGCAATGTCAACACAGATTTATT  100

seq1  AAAAGTAGGGAATTGAGAATTAGTCACCTACTCAAAATGGAGGCCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGGGAATTGAGAATTAGTCACCTACTCAAAATGGAGGCCATTTT  150

seq1  ACAGAGCAAAGATGACACAGAGGAAAGGTCCCTGGATCATGTCAGAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAAGATGACACAGAGGAAAGGTCCCTGGATCATGTCAGAGGCG  200

seq1  ACCTATAGGATGGCTGATGAGATAGAGAAGCCTCTAAGCTAGATAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGGATGGCTGATGAGATAGAGAAGCCTCTAAGCTAGATAGTGGA  250

seq1  GGGCATGATACTCCCTTGGGTGGGTCAGAAAGACTGGCAGCGTAGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGATACTCCCTTGGGTGGGTCAGAAAGACTGGCAGCGTAGGATGC  300

seq1  AGAGAGGCGAAGGAACAGTGTGGGGGAAAGCAAAATTAGAAAGGGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCGAAGGAACAGTGTGGGGGAAAGCAAAATTAGAAAGGGTTAGA  350

seq1  GGAGCCAGGTGGTGGTGGCGGCGCACACATGCCTTTAATCCCAGCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGTGGTGGTGGCGGCGCACACATGCCTTTAATCCCAGCACTTG  400

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCTTGAAAAAACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCTTGAAAAAACCAGA  450

seq1  AACCAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGACAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGACAGAGAGAG  500

seq1  AGAGACAGAGAGAAAAAGGGTTAGAGGAGGCCAATGTGGGAACCCCGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAAAAAGGGTTAGAGGAGGCCAATGTGGGAACCCCGAGC  550

seq1  ATTTTGAGCAACTTTTGGAAAAACAAAACAAAACAAAACAAAACCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGCAACTTTTGGAAAAACAAAACAAAACAAAACAAAACCTGTGA  600

seq1  CCTTCCAAGAATACTGTGTTTTCAGAAGGTCAACTCATCAGTAACTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGAATACTGTGTTTTCAGAAGGTCAACTCATCAGTAACTGGAC  650

seq1  TGGAAGTCTAACAGTGAAGGGAATGTAGTCAGCCATCAGCAGTGTTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTAACAGTGAAGGGAATGTAGTCAGCCATCAGCAGTGTTGTGA  700

seq1  GGAGACGGAAAACCTCGTGTTTCTGACTTAGCAGTTGAGATAGCTACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGGAAAACCTCGTGTTTCTGACTTAGCAGTTGAGATAGCTACAAC  750

seq1  AAACACATTGCATACAATGTGCACAGGTACAGGAGTTTAGGCAGGCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTGCATACAATGTGCACAGGTACAGGAGTTTAGGCAGGCACCC  800

seq1  TCAGGGAGAGTAGAGCTCTCAAAGGTAGGAGTGAGTACAGCCTGCCATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGAGTAGAGCTCTCAAAGGTAGGAGTGAGTACAGCCTGCCATGG  850

seq1  GAAGACGCTGGATTTGGGTTCCTGTCACTTGAAGAATATTCACACTACAG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAGACGCTGGATTTGGGTTCCTGTCACTTGAAG-ATATTCACACTACAG  899

seq1  ACTACTGTCACAAAATACCTCAAGCTGTGCATGTTATAAATAATAGCTAT  950
      ||||||||||| |||||||||||||||||||||||||||   ||||||||
seq2  ACTACTGTCAC-AAATACCTCAAGCTGTGCATGTTATAA--TATAGCTAT  946

seq1  TTTTCATAGCTCTA-GAGGCTATAAGAACCCTCTTAAGGTCCCAGCAGAT  999
      |||||||||||||| |||||||||   |||||||||  || |||||||||
seq2  TTTTCATAGCTCTAGGAGGCTATA--GACCCTCTTA--GT-CCAGCAGAT  991

seq1  ACTGTTGGATGGTTCTGCCTGCTGTTCACGGGTGGCTCCTTGTGTATGCT  1049
      |||||| ||||| |||| |||||| |||||||| ||||  ||||||||||
seq2  ACTGTT-GATGG-TCTG-CTGCTG-TCACGGGT-GCTC--TGTGTATGCT  1034

seq1  CTTTTGGTAGATGGGACCAGGGAGCACAGT-AGAGCCTGTTCCTAAGGAC  1098
      ||||  ||||||||    |  | ||||||| ||||| ||||| ||  |||
seq2  CTTT--GTAGATGG----ACAGTGCACAGTAAGAGCTTGTTCTTA--GAC  1076

seq1  ACTAATCTAGCCACAG-AGCCTCTGCTTTCATGAACTAACAGG  1140
      |||||||||  ||||| |||||||||||  ||||||| |||||
seq2  ACTAATCTAAGCACAGAAGCCTCTGCTTCTATGAACT-ACAGG  1118