BAC Information

Click to search

BAC

Clone NameB6Ng01-154O04
Chromosome19 (Build37)
Map Location 40,930,871 - 41,082,239
singlet/doubletdoublet
Overlap geneLOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk
Upstream geneLOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj
Downstream geneLOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154O04.bB6Ng01-154O04.g
ACCDH949810DH949811
length759743
definitionDH949810|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O04, 5' end.DH949811|Mus musculus domesticus DNA, BAC clone: B6Ng01-154O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,081,481 - 41,082,239)(40,930,871 - 40,931,596)
sequence
gaattccaggacagcagcatgaagagattcaatggtccaggccctttgcc
ggcttagttgaaagcctgtgttatcttcaagggcgccaagttgagctttt
gtgctgctattggtcctgtttcatccttccagttgacacagaaagtaggc
aagaggaaggaaagccttcccgagatgcccagcgagctcagaaagaaggg
ggagggggaagcgtggcctccagtgctgtacttggtcctgccctggggac
gacagctgtccccctggctcacacagcatcctctctggggagctgaccca
ttttctctggcctccccactggctcatggtgcagtttctagctgtctctg
gaaaagcatgcatcatgccatttcataattgtttacttaaatatgttccc
tttccttgcttaggaacttctcaaaggaagaaagaatttaaatccattaa
aaagtggggggggggggcggtttcagggacctacctaacacaagatgtat
gtttcatttgtcaaagtttagaaaggaagacattgctcttccaaagagaa
ggctcaaggctgggaaggagtcttaaactgctactttgcaaatgacagtg
ggtctccccatccctcccctgccccccagtagctgtgcctttctctggaa
tattcttggtgtgtagatgagaataactttgcagagctgggtgggcctct
gacctggctccacaggggaagacagcttggtttcccacagcctttatggt
tagttcaga
gaattccagtcccagcacctacactgtgcagctcacaaccactggtaact
ccagttctaggggatcagataccccttatggacagtaaacacacctacac
atatgggtgtgtcttcatgttctattactgtgagcagataccatgaccat
gatagctctttatagaaaagtatttaaatggggctggcttagtgtttcag
agcttttagagcttcctatcatgttgataggaaggaagcatggcagcaca
gggcagatacgatgctggagaagtagctaagagttttatctccagatcca
ctggcagcaggaagagagagactctggacttgtcatgggcttttgaaacc
ccaaagcccaaccccagtgacacacttccttcaacaaggccacacctcct
aaaccctctcaaggagtggtactccctgatggccaacattcacatctatg
agcctatgggggccattcttactcaaaccaccacagggtgcacacgtacc
aagacatattaaacatttccttcaaaacagttctaaagcttctagaaatg
aatatttaagtgcaaagattcccgggtttcttcaaactggaaagagaaat
ctggataactacctgttgaaacttccaactaggacatttttggggtgtaa
actggctcacttcttgacatgagaagctttttctcttaaaaaaaaaagaa
gaggaagaagaagaggaagaagaagaaggagaaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41081481_41082239
seq2: B6Ng01-154O04.b_46_804 (reverse)

seq1  TCTGAACTAACCATGAAGGCTGTGGGAAACCATGCTGTCTTCCCCTGTGG  50
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TCTGAACTAACCATAAAGGCTGTGGGAAACCAAGCTGTCTTCCCCTGTGG  50

seq1  AGCCAGGTCAGAGGCCCACCCAGCTCTGCAAAGTTATTCTCATCTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTCAGAGGCCCACCCAGCTCTGCAAAGTTATTCTCATCTACACA  100

seq1  CCAAGAATATTCCAGAGAAAGGCACAGCTACTGGGGGGCAGGGGAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAATATTCCAGAGAAAGGCACAGCTACTGGGGGGCAGGGGAGGGAT  150

seq1  GGGGAGACCCACTGTCATTTGCAAAGTAGCAGTTTAAGACTCCTTCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACCCACTGTCATTTGCAAAGTAGCAGTTTAAGACTCCTTCCCAG  200

seq1  CCTTGAGCCTTCTCTTTGGAAGAGCAATGTCTTCCTTTCTAAACTTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCCTTCTCTTTGGAAGAGCAATGTCTTCCTTTCTAAACTTTGAC  250

seq1  AAATGAAACATACATCTTGTGTTAGGTAGGTCCCTGAAACCGCCCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACATACATCTTGTGTTAGGTAGGTCCCTGAAACCGCCCCCCCC  300

seq1  CCCCACTTTTTAATGGATTTAAATTCTTTCTTCCTTTGAGAAGTTCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTTTTAATGGATTTAAATTCTTTCTTCCTTTGAGAAGTTCCTAA  350

seq1  GCAAGGAAAGGGAACATATTTAAGTAAACAATTATGAAATGGCATGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAAGGGAACATATTTAAGTAAACAATTATGAAATGGCATGATGC  400

seq1  ATGCTTTTCCAGAGACAGCTAGAAACTGCACCATGAGCCAGTGGGGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCCAGAGACAGCTAGAAACTGCACCATGAGCCAGTGGGGAGGC  450

seq1  CAGAGAAAATGGGTCAGCTCCCCAGAGAGGATGCTGTGTGAGCCAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAATGGGTCAGCTCCCCAGAGAGGATGCTGTGTGAGCCAGGGGG  500

seq1  ACAGCTGTCGTCCCCAGGGCAGGACCAAGTACAGCACTGGAGGCCACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTCGTCCCCAGGGCAGGACCAAGTACAGCACTGGAGGCCACGCT  550

seq1  TCCCCCTCCCCCTTCTTTCTGAGCTCGCTGGGCATCTCGGGAAGGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCCTTCTTTCTGAGCTCGCTGGGCATCTCGGGAAGGCTTTC  600

seq1  CTTCCTCTTGCCTACTTTCTGTGTCAACTGGAAGGATGAAACAGGACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTGCCTACTTTCTGTGTCAACTGGAAGGATGAAACAGGACCAA  650

seq1  TAGCAGCACAAAAGCTCAACTTGGCGCCCTTGAAGATAACACAGGCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCACAAAAGCTCAACTTGGCGCCCTTGAAGATAACACAGGCTTTC  700

seq1  AACTAAGCCGGCAAAGGGCCTGGACCATTGAATCTCTTCATGCTGCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCCGGCAAAGGGCCTGGACCATTGAATCTCTTCATGCTGCTGTC  750

seq1  CTGGAATTC  759
      |||||||||
seq2  CTGGAATTC  759

seq1: chr19_40930871_40931596
seq2: B6Ng01-154O04.g_86_811

seq1  CCTACACTGTGCAGCTCACAACCACTGGTAACTCCAGTTCTAGGGGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTGTGCAGCTCACAACCACTGGTAACTCCAGTTCTAGGGGATCA  50

seq1  GATACCCCTTATGGACAGTAAACACACCTACACATATGGGTGTGTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCCTTATGGACAGTAAACACACCTACACATATGGGTGTGTCTTCA  100

seq1  TGTTCTATTACTGTGAGCAGATACCATGACCATGATAGCTCTTTATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATTACTGTGAGCAGATACCATGACCATGATAGCTCTTTATAGAA  150

seq1  AAGTATTTAAATGGGGCTGGCTTAGTGTTTCAGAGCTTTTAGAGCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAAATGGGGCTGGCTTAGTGTTTCAGAGCTTTTAGAGCTTCCT  200

seq1  ATCATGTTGATAGGAAGGAAGCATGGCAGCACAGGGCAGATACGATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTGATAGGAAGGAAGCATGGCAGCACAGGGCAGATACGATGCTG  250

seq1  GAGAAGTAGCTAAGAGTTTTATCTCCAGATCCACTGGCAGCAGGAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGCTAAGAGTTTTATCTCCAGATCCACTGGCAGCAGGAAGAGA  300

seq1  GAGACTCTGGACTTGTCATGGGCTTTTGAAACCCCAAAGCCCAACCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGGACTTGTCATGGGCTTTTGAAACCCCAAAGCCCAACCCCAG  350

seq1  TGACACACTTCCTTCAACAAGGCCACACCTCCTAAACCCTCTCAAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTTCCTTCAACAAGGCCACACCTCCTAAACCCTCTCAAGGAGT  400

seq1  GGTACTCCCTGATGGCCAACATTCACATCTATGAGCCTATGGGGGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCCCTGATGGCCAACATTCACATCTATGAGCCTATGGGGGCCATT  450

seq1  CTTACTCAAACCACCACAGGGTGCACACGTACCAAGACATATTAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAAACCACCACAGGGTGCACACGTACCAAGACATATTAAACATT  500

seq1  TCCTTCAAAACAGTTCTAAAGCTTCTAGAAATGAATATTTAAGTGCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAAACAGTTCTAAAGCTTCTAGAAATGAATATTTAAGTGCAAAG  550

seq1  ATTCCCGGGTTTCTTCAAACTGGAAAGAGAAATCTGGATAACTACCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGGGTTTCTTCAAACTGGAAAGAGAAATCTGGATAACTACCTGTT  600

seq1  GAAACTTCCAACTAGGACATTTTTGGGGTGTAAACTGGCTCACTTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCAACTAGGACATTTTTGGGGTGTAAACTGGCTCACTTCTTGA  650

seq1  CATGAGAAGCTTTTTCTCTTAAAAAAAAAAGAAGAGGAAGAAGAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAGCTTTTTCTCTTAAAAAAAAAAGAAGAGGAAGAAGAAGAGGA  700

seq1  AGAAGAAGAAGGAGAAGGAGGAGGAG  726
      ||||||||||||||||||||||||||
seq2  AGAAGAAGAAGGAGAAGGAGGAGGAG  726