BAC Information

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BAC

Clone NameB6Ng01-155A01
Chromosome13 (Build37)19 (Build37)
Map Location 21,541,464 - 21,542,54626,802,363 - 26,802,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187
Downstream gene4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155A01.bB6Ng01-155A01.g
ACCDH949898DH949899
length1,074286
definitionDH949898|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A01, 5' end.DH949899|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,541,464 - 21,542,546)(26,802,363 - 26,802,451)
sequence
gaattctcagttctgagttgaagggaaacccaaaaccttagtgtctgact
tgaaggtgctacagaggaagtctcactcatttgtgagaggatgcgtcctt
ttgttctccaaccttctgttgatctggcaaggcctactacattgtgaagg
atagactgttttactcttgtctacagtctgttaacttaaatattaaatct
aaactcattttaaccaaatattttcacccaggtgtcagaagtgacttata
aactaaccatcacagtactaacctgatattttctgaccaacaaacatcac
atccttggactttctcaagcctctattaataggtcatgctactctgagcc
tctcacatccttgctacttgagaggtacgaatgggagggttgtttcagct
cagacatatgaggcctcgttgagcaacacagcaaaaccacatcacaaaca
aacaaatactagtaatggcttttaaatgtaatgattaggttataagcttc
ctggctcggcctctggaatgttgtgatgcagacctgaaggaccccatctg
ctttaaatctttgctgttttgtttttaatgcaagcattggatttcaagtg
gttcacttagctgtgtctccttaatctagaacaataacctcctagcatac
atctgcttttttgctttggggaaattggattcatgcctgtcatagattgt
ctgagttctggatttctcagaaagtttcctcaggaaattcatgataaata
atatttattaaaagtgttccataggtaatggggccttgttgttgatgctg
ctacacttggtcttttgggtacatttgcagctgccaggtacctttatctt
ctttttattgctacacagcagctggttagcactgagaatgctctgttctc
cctcttctcaccccgtgctttagcattcgtgtgtgcctctcacctgaatc
atttgagagtttaaatggcagttttcaaatctatccaatttctagtttag
tggcaacctatgaaagtttctcattttgcttatatattcttagagtagct
actttgggaacacaaatgactaga
tggggactgtggagaggggataaatgccagagagggaccttggcgattca
agaaggctgctcctcctcctcttgttgtagtctgccaaatggttgtgaac
aaagagacaagaagttggagatatcctgacatgaagattggacttgcctc
aaggaactccaatgactctaattagcaggaagtagtctaaagaggtctac
acccactttttcctctaactttcctcttctacctagtgttgggaggttgg
aaggaattagggtagaataaggcatggaagggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21541464_21542546
seq2: B6Ng01-155A01.b_46_1119 (reverse)

seq1  TCTAGTCATTTGTGTTCTCCAAAGTAGCTACTCTTAAGAATATATAAGCA  50
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TCTAGTCATTTGTGTTC-CCAAAGTAGCTACTC-TAAGAATATATAAGCA  48

seq1  AAATGAGAAAACTTTCATAGGTTGCCACCTAAACTAGAAATTGGAATAGA  100
      ||||||| ||||||||||||||||||| |||||||||||||||| |||||
seq2  AAATGAG-AAACTTTCATAGGTTGCCA-CTAAACTAGAAATTGG-ATAGA  95

seq1  TTTGAAAAACTGCCATTTAAAACTCTCAAATGATTCAGGTGAGAGGCACA  150
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTG-AAAACTGCCATTT-AAACTCTCAAATGATTCAGGTGAGAGGCACA  143

seq1  CACGAATGCTAAAAGCACGGGGTGAGAAGAGGGGAGAACAGAGCATTCTC  200
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CACGAATGCT-AAAGCACGGGGTGAGAAGA-GGGAGAACAGAGCATTCTC  191

seq1  AGTGCTAACCAGCTGCTGTGTAGCAATAAAAAGAAGATAAAGGTACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAACCAGCTGCTGTGTAGCAATAAAAAGAAGATAAAGGTACCTGG  241

seq1  CAGCTGCAAATGTACCCAAAAGACCAAGTGTAGCAGCATCAACAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAAATGTACCCAAAAGACCAAGTGTAGCAGCATCAACAACAAGG  291

seq1  CCCCATTACCTATGGAACACTTTTAATAAATATTATTTATCATGAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTACCTATGGAACACTTTTAATAAATATTATTTATCATGAATTTC  341

seq1  CTGAGGAAACTTTCTGAGAAATCCAGAACTCAGACAATCTATGACAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAACTTTCTGAGAAATCCAGAACTCAGACAATCTATGACAGGCA  391

seq1  TGAATCCAATTTCCCCAAAGCAAAAAAGCAGATGTATGCTAGGAGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAATTTCCCCAAAGCAAAAAAGCAGATGTATGCTAGGAGGTTAT  441

seq1  TGTTCTAGATTAAGGAGACACAGCTAAGTGAACCACTTGAAATCCAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGATTAAGGAGACACAGCTAAGTGAACCACTTGAAATCCAATGC  491

seq1  TTGCATTAAAAACAAAACAGCAAAGATTTAAAGCAGATGGGGTCCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTAAAAACAAAACAGCAAAGATTTAAAGCAGATGGGGTCCTTCAG  541

seq1  GTCTGCATCACAACATTCCAGAGGCCGAGCCAGGAAGCTTATAACCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATCACAACATTCCAGAGGCCGAGCCAGGAAGCTTATAACCTAAT  591

seq1  CATTACATTTAAAAGCCATTACTAGTATTTGTTTGTTTGTGATGTGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATTTAAAAGCCATTACTAGTATTTGTTTGTTTGTGATGTGGTTT  641

seq1  TGCTGTGTTGCTCAACGAGGCCTCATATGTCTGAGCTGAAACAACCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTTGCTCAACGAGGCCTCATATGTCTGAGCTGAAACAACCCTCC  691

seq1  CATTCGTACCTCTCAAGTAGCAAGGATGTGAGAGGCTCAGAGTAGCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTACCTCTCAAGTAGCAAGGATGTGAGAGGCTCAGAGTAGCATGA  741

seq1  CCTATTAATAGAGGCTTGAGAAAGTCCAAGGATGTGATGTTTGTTGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAATAGAGGCTTGAGAAAGTCCAAGGATGTGATGTTTGTTGGTCA  791

seq1  GAAAATATCAGGTTAGTACTGTGATGGTTAGTTTATAAGTCACTTCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCAGGTTAGTACTGTGATGGTTAGTTTATAAGTCACTTCTGAC  841

seq1  ACCTGGGTGAAAATATTTGGTTAAAATGAGTTTAGATTTAATATTTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTGAAAATATTTGGTTAAAATGAGTTTAGATTTAATATTTAAGT  891

seq1  TAACAGACTGTAGACAAGAGTAAAACAGTCTATCCTTCACAATGTAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACTGTAGACAAGAGTAAAACAGTCTATCCTTCACAATGTAGTAG  941

seq1  GCCTTGCCAGATCAACAGAAGGTTGGAGAACAAAAGGACGCATCCTCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCAGATCAACAGAAGGTTGGAGAACAAAAGGACGCATCCTCTCA  991

seq1  CAAATGAGTGAGACTTCCTCTGTAGCACCTTCAAGTCAGACACTAAGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTGAGACTTCCTCTGTAGCACCTTCAAGTCAGACACTAAGGTT  1041

seq1  TTGGGTTTCCCTTCAACTCAGAACTGAGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  TTGGGTTTCCCTTCAACTCAGAACTGAGAATTC  1074

seq1: chr19_26802363_26802451
seq2: B6Ng01-155A01.g_184_272 (reverse)

seq1  GTAGACCTCTTTAGACTACTTCCTGCTGATTCGGGACA-TCGTGTCTCTT  49
      ||||||||||||||||||||||||||| ||| | | || | | ||  |||
seq2  GTAGACCTCTTTAGACTACTTCCTGCTAATTAGAGTCATTGGAGTTCCTT  50

seq1  GGGACCAGTCCAATCATCGTCGTCAGGATATCTCCAACTT  89
      | | | ||||||||| || | |||||||||||||||||||
seq2  GAGGCAAGTCCAATCTTCAT-GTCAGGATATCTCCAACTT  89