BAC Information

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BAC

Clone NameB6Ng01-155A02
Chromosome19 (Build37)
Map Location 28,320,697 - 28,426,159
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155A02.bB6Ng01-155A02.g
ACCDH949900DH949901
length1,2081,102
definitionDH949900|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A02, 5' end.DH949901|Mus musculus domesticus DNA, BAC clone: B6Ng01-155A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,424,945 - 28,426,159)(28,320,697 - 28,321,808)
sequence
gaattcatcaaaaataaccataaaaattccaaggtgataaaggcacagtg
gagtaatggtcccagccatagggaattgttttgctgaaaagaataaaact
ctatgctgtcacaccctgttagtcatggacttgcttaatataccctgcct
gcccgcctctctctaatcctgtctttaacctccccctagatgctaaatga
cattattttggtcttagccagttttatgaggcccagctcggaaattgggt
tcagtaacaaacacccgtaagataatgtatataaggagaagcaggttgct
cctgagtggtaccctgaccacaggcatatggtccttcctggcacgtgacc
cgttccaccagaaaataagatggacctggaatcttagccaaacatttctc
aagatgttttaagaaagaagaaggaaaagaccaggggagcagagacagtt
tggcttattgcatacagagagtagtttctcttgtttgcaaaaagcaagca
agcatacacacacatacaccacatctcaccagccagcaggcacccagact
tgttcatctgatgtacgctgcagttcttgaatgctttgaaacaggggcgc
accgataaaatgagtaggcaagcattcaagccaccagaaaaggtattcat
tgggaatagaatttagcctccagagcaaaaggtacagaatctgtccttca
attcttcccgatgcgcgagtgaaatacgagaagactagggcagatgagcc
acttgaaattcttctcaaggctgtgagttttatcagaatttttcattttc
accctggaagtaccaggaacatggttttcttcaaccctagcctgttgtca
aaatggactttaaaagaaaaatgaatacaagcaatgcctgagagttagag
gtgacgtgaatcttcatccaacccgcacttgcttaaagattctaaacttt
acgaattattaatgtttgtagacattgacctttgattggctgaacgtcag
tgatgtcactttcatgacctcacaccagcgatgcagtactacgtttatat
ttcgtactagagtgagtcttttctgtattctggctgtgcacaagcagttt
acttatgcagttttttcaaggtgagaaggtaattctttagactgttaaag
ccgcaatctcttttccgaatctcccggaactataaaatggttacgggggg
agcccatg
gaattcctgagatgttaataagtgggaaaagcagtggtgcatggatagtt
atctagtcagaaatatttataacgaattccaggtaagagaaatgggaaaa
tgcaaacgaatgccatatttgctgctctcaccctggacactcagctccat
cctgatgctccccagtacaacggtcctctgaaaataatgcagtggaagag
aagccatgccaggcatgagctgctgcactgtgtaggcagcccttggggaa
actccacagataatgactcaggtctgagttggtgcctctcctaacagcat
aaagtcagcaaaataagaaggactcaggagcaagttttcaacgatggctc
ggcaactcaggttttgatggcttggtcattatccaatctatcatatgtgg
tatgtggtgatcttagattcacaggacatcatgattccgactctctgagt
gtccccattcacaaggctaccataaagcctttaggatacattccaggctt
acagacaccctgaattcttctttctcattcactgtgggaaatgctgttag
ctaggataccaagtgcttgggggtggttagattctggctgactacctggg
ccaagtcaggtgccacagaaccctttgtggttttaagtccagacgaataa
gatgcctacttaaatctacgtctttgtctacatctccgtgcatgcttcta
tttctatagacctgtatacagatatacagagaacaaccggctggttgtct
cttctccttttatattagttaagcctggggatgtaggaatgtagaatggt
catcatttgcaggttacatagatcagagaaaagggggcggtaagtctgtg
tgaagccatagctagcaacaggccaatgcaggagagatgagagcgaggat
agggaaggagacacgaaggcgcggagcactggaatgtgaatgcattgagc
agttttcagtcccatttctgactgtctcgtcattaactctctctcaacac
aagcgagcacagtgggcttttgtgtcttagatccgagctgctttagtctg
gtgtgctgaatttctctctcatattctgacagatggctctccttgctatc
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28424945_28426159
seq2: B6Ng01-155A02.b_45_1252 (reverse)

seq1  CATGGGCT-CCCCCGTGAC--ATTTATAGTTCGGGGAGATTCTGGAGAAA  47
      |||||||| ||||||| ||   |||||||||| ||||||||| | | | |
seq2  CATGGGCTCCCCCCGTAACCATTTTATAGTTCCGGGAGATTCGGAAAAGA  50

seq1  GATGGCGGCTTTTAACAGTCTAAAGAATTACCCATCTCA-CTTGAAGAAA  96
      ||| ||||| |||||||||||||||||||| || ||||| |||||| |||
seq2  GATTGCGGC-TTTAACAGTCTAAAGAATTA-CCTTCTCACCTTGAA-AAA  97

seq1  ACTGCATTAAGTAAACTGCCTGTGCACAGCCAGAATACAGACAGAACTCA  146
      |||||| |||||||||||| ||||||||||||||||||||| |  |||||
seq2  ACTGCA-TAAGTAAACTGCTTGTGCACAGCCAGAATACAGAAAAGACTCA  146

seq1  CTCTAAGTACGAAATATAAACGTAGGTAACTGCAATCGCTGGTGTTGAGG  196
      |||| ||||||||||||||||||||   ||||| |||||||||| |||||
seq2  CTCT-AGTACGAAATATAAACGTAG--TACTGC-ATCGCTGGTG-TGAGG  191

seq1  TCATGAAAGTGAACATCACTGACGTTCAGCCAATCAAAGGTCAATGTCTA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TCATGAAAGTG-ACATCACTGACGTTCAGCCAATCAAAGGTCAATGTCT-  239

seq1  ACAAACATTAATAATTCGTAAAGTTTAGAATCTTTAAGCAAGTGCGGGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTAATAATTCGTAAAGTTTAGAATCTTTAAGCAAGTGCGGGTT  289

seq1  GGATGAAGATTCACGTCACCTCTAACTCTCAGGCATTGCTTGTATTCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGATTCACGTCACCTCTAACTCTCAGGCATTGCTTGTATTCATT  339

seq1  TTTCTTTTAAAGTCCATTTTGACAACAGGCTAGGGTTGAAGAAAACCATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAAAGTCCATTTTGACAACAGGCTAGGGTTGAAGAAAACCATG  389

seq1  TTCCTGGTACTTCCAGGGTGAAAATGAAAAATTCTGATAAAACTCACAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTACTTCCAGGGTGAAAATGAAAAATTCTGATAAAACTCACAGC  439

seq1  CTTGAGAAGAATTTCAAGTGGCTCATCTGCCCTAGTCTTCTCGTATTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGAATTTCAAGTGGCTCATCTGCCCTAGTCTTCTCGTATTTCA  489

seq1  CTCGCGCATCGGGAAGAATTGAAGGACAGATTCTGTACCTTTTGCTCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGCATCGGGAAGAATTGAAGGACAGATTCTGTACCTTTTGCTCTGG  539

seq1  AGGCTAAATTCTATTCCCAATGAATACCTTTTCTGGTGGCTTGAATGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAATTCTATTCCCAATGAATACCTTTTCTGGTGGCTTGAATGCTT  589

seq1  GCCTACTCATTTTATCGGTGCGCCCCTGTTTCAAAGCATTCAAGAACTGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTCATTTTATCGGTGCGCCCCTGTTTCAAAGCATTCAAGAACTGC  639

seq1  AGCGTACATCAGATGAACAAGTCTGGGTGCCTGCTGGCTGGTGAGATGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTACATCAGATGAACAAGTCTGGGTGCCTGCTGGCTGGTGAGATGTG  689

seq1  GTGTATGTGTGTGTATGCTTGCTTGCTTTTTGCAAACAAGAGAAACTACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTATGCTTGCTTGCTTTTTGCAAACAAGAGAAACTACT  739

seq1  CTCTGTATGCAATAAGCCAAACTGTCTCTGCTCCCCTGGTCTTTTCCTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATGCAATAAGCCAAACTGTCTCTGCTCCCCTGGTCTTTTCCTTC  789

seq1  TTCTTTCTTAAAACATCTTGAGAAATGTTTGGCTAAGATTCCAGGTCCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTAAAACATCTTGAGAAATGTTTGGCTAAGATTCCAGGTCCAT  839

seq1  CTTATTTTCTGGTGGAACGGGTCACGTGCCAGGAAGGACCATATGCCTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTGGTGGAACGGGTCACGTGCCAGGAAGGACCATATGCCTGT  889

seq1  GGTCAGGGTACCACTCAGGAGCAACCTGCTTCTCCTTATATACATTATCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGTACCACTCAGGAGCAACCTGCTTCTCCTTATATACATTATCT  939

seq1  TACGGGTGTTTGTTACTGAACCCAATTTCCGAGCTGGGCCTCATAAAACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTGTTTGTTACTGAACCCAATTTCCGAGCTGGGCCTCATAAAACT  989

seq1  GGCTAAGACCAAAATAATGTCATTTAGCATCTAGGGGGAGGTTAAAGACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACCAAAATAATGTCATTTAGCATCTAGGGGGAGGTTAAAGACA  1039

seq1  GGATTAGAGAGAGGCGGGCAGGCAGGGTATATTAAGCAAGTCCATGACTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAGAGAGGCGGGCAGGCAGGGTATATTAAGCAAGTCCATGACTA  1089

seq1  ACAGGGTGTGACAGCATAGAGTTTTATTCTTTTCAGCAAAACAATTCCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTGTGACAGCATAGAGTTTTATTCTTTTCAGCAAAACAATTCCCT  1139

seq1  ATGGCTGGGACCATTACTCCACTGTGCCTTTATCACCTTGGAATTTTTAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGACCATTACTCCACTGTGCCTTTATCACCTTGGAATTTTTAT  1189

seq1  GGTTATTTTTGATGAATTC  1215
      |||||||||||||||||||
seq2  GGTTATTTTTGATGAATTC  1208

seq1: chr19_28320697_28321808
seq2: B6Ng01-155A02.g_65_1166

seq1  GAATTCCTGAGATGTTAATAAGTGGGAAAAGCAGTGGTGCATGGATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGATGTTAATAAGTGGGAAAAGCAGTGGTGCATGGATAGTT  50

seq1  ATCTAGTCAGAAATATTTATAACGAATTCCAGGTAAGAGAAATGGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCAGAAATATTTATAACGAATTCCAGGTAAGAGAAATGGGAAAA  100

seq1  TGCAAACGAATGCCATATTTGCTGCTCTCACCCTGGACACTCAGCTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACGAATGCCATATTTGCTGCTCTCACCCTGGACACTCAGCTCCAT  150

seq1  CCTGATGCTCCCCAGTACAACGGTCCTCTGAAAATAATGCAGTGGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCTCCCCAGTACAACGGTCCTCTGAAAATAATGCAGTGGAAGAG  200

seq1  AAGCCATGCCAGGCATGAGCTGCTGCACTGTGTAGGCAGCCCTTGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCCAGGCATGAGCTGCTGCACTGTGTAGGCAGCCCTTGGGGAA  250

seq1  ACTCCACAGATAATGACTCAGGTCTGAGTTGGTGCCTCTCCTAACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGATAATGACTCAGGTCTGAGTTGGTGCCTCTCCTAACAGCAT  300

seq1  AAAGTCAGCAAAATAAGAAGGACTCAGGAGCAAGTTTTCAACGATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCAAAATAAGAAGGACTCAGGAGCAAGTTTTCAACGATGGCTC  350

seq1  GGCAACTCAGGTTTTGATGGCTTGGTCATTATCCAATCTATCATATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTCAGGTTTTGATGGCTTGGTCATTATCCAATCTATCATATGTGG  400

seq1  TATGTGGTGATCTTAGATTCACAGGACATCATGATTCCGACTCTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTGATCTTAGATTCACAGGACATCATGATTCCGACTCTCTGAGT  450

seq1  GTCCCCATTCACAAGGCTACCATAAAGCCTTTAGGATACATTCCAGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATTCACAAGGCTACCATAAAGCCTTTAGGATACATTCCAGGCTT  500

seq1  ACAGACACCCTGAATTCTTCTTTCTCATTCACTGTGGGAAATGCTGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCCTGAATTCTTCTTTCTCATTCACTGTGGGAAATGCTGTTAG  550

seq1  CTAGGATACCAAGTGCTTGGGGGTGGTTAGATTCTGGCTGACTACCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATACCAAGTGCTTGGGGGTGGTTAGATTCTGGCTGACTACCTGGG  600

seq1  CCAAGTCAGGTGCCACAGAACCCTTTGTGGTTTTAAGTCCAGACGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCAGGTGCCACAGAACCCTTTGTGGTTTTAAGTCCAGACGAATAA  650

seq1  GATGCCTACTTAAATCTACGTCTTTGTCTACATCTCCGTGCATGCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTACTTAAATCTACGTCTTTGTCTACATCTCCGTGCATGCTTCTA  700

seq1  TTTCTATAGACCTGTATACAGATATACAGAGAACAACCGGCTGGTTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAGACCTGTATACAGATATACAGAGAACAACCGGCTGGTTGTCT  750

seq1  CTTCTCCTTTTATATTAGTTAAGCCTGGGGATGTAGGAATGTAGAATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTTTATATTAGTTAAGCCTGGGGATGTAGGAATGTAGAATGGT  800

seq1  CATCATTTGCAGGTTACATAGATCAGAGAAAAGGGGGCGGTAAGTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGCAGGTTACATAGATCAGAGAAAAGGGGGCGGTAAGTCTGTG  850

seq1  TGAAGCCATAGCTAGCAACAGGCCAATGCAGGGAGAGATGAGAGCGAGGA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAAGCCATAGCTAGCAACAGGCCAATGCA-GGAGAGATGAGAGCGAGGA  899

seq1  TAGGGAAGGAGACACGAAGGCGCGGAGCACTGGAATGTGAATGCATTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGGAGACACGAAGGCGCGGAGCACTGGAATGTGAATGCATTGAG  949

seq1  CAGTTTTCAGTCCCATTTCTGACTGTCTCGTCATTAACTCTCTTCTCAAC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGTTTTCAGTCCCATTTCTGACTGTCTCGTCATTAACTCTC-TCTCAAC  998

seq1  ACAGGCGAGCACCAGTGGGCTTTTGTGTCTTAGGATCCGGAGCTGCTTTT  1050
      ||| ||||||| |||||||||||||||||||| ||||| ||||||| |||
seq2  ACAAGCGAGCA-CAGTGGGCTTTTGTGTCTTA-GATCC-GAGCTGC-TTT  1044

seq1  AGTCTGGTGTGCTGAATTTCTCTCTCATATTCTGACAGGTTGGCTCCTCC  1100
      ||||||||||||||||||||||||||||||||||||| | ||||| ||||
seq2  AGTCTGGTGTGCTGAATTTCTCTCTCATATTCTGACA-GATGGCT-CTCC  1092

seq1  TCTGCTACTCCA  1112
      | ||||| ||||
seq2  T-TGCTA-TCCA  1102