BAC Information

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BAC

Clone NameB6Ng01-155G03
Chromosome19 (Build37)
Map Location 42,990,261 - 43,105,294
singlet/doubletdoublet
Overlap geneLOC545291
Upstream genePgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155G03.bB6Ng01-155G03.g
ACCDH950183DH950184
length1,119451
definitionDH950183|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G03, 5' end.DH950184|Mus musculus domesticus DNA, BAC clone: B6Ng01-155G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,990,261 - 42,991,303)(43,104,838 - 43,105,294)
sequence
gaattctctttagctttgtaccccatttttaaattgggttatttgttctt
ttggagtgtaacttcttgagttctttctatattttggatattagccttct
atcagaggtagggttagtgtagatgttttcccaatctgttggttctcatt
tagtcctattaacagtgtcctttgccttacagaagcttttcaatttcatg
aggtcccatttatcaattgttgatcttagaatctgagctattggggttct
gttcaagaaaatttccccagtgccactgcatttgaggctatttcccactt
tcttttctattagtttcggtgtatctggttttatgtagaggtccttgatc
cacttagaattgagctttgtacaagggggtaagaatggaccaatttgcat
tcttctacatgcagaccgccagttagaccagaaccatttgttggagatgc
tttcctttttccactgtatggtcttgggttctttgtcaaagatcaagtgt
ctgtaggtgtatgggtttatttctgggtctcaattctctgtcaccaattg
acctgtccgtctctgttccaataccatgtggctttcattaccattgctct
cactctttataacactgctcagagggagtctctcaaagagaattagaaat
cataaaaataagaaagggggagaaacagttgattaaaaaataatcatata
gtgaagctgaagactatatttataattccttaaaatacactatatctata
aatgtacttcctttataactaattaaagctgaagaatgtacttgtatttt
tcttttcttttctttttaaccgttggctttcaggcaattcataatttaac
tttgtccttagagataagctctgaaaacatgctaagtggaaaaaaaacca
acataaatggtcatgtattatatgaatccatttatttaaaaaatctagat
tatgttctagaaagtgcatagaggtacaagtaaattaatagtttcacaga
gttgataagaggagagtttgagtagagacaaaggagtggcttactatgag
catgagttctttgttagtcttgaattgttataaattaaagtggcaatatg
aaatttatgatactagact
tgagaactcatgttccacctcccattccctttcattagggttcatcagtg
ctggcctgctttctgttccttaaactttccaagcttgtgctgcctcaaaa
ctagtgtacttgctatttttctcttacagcattctctttccagatctgtt
cttggctgactatttgtcattattgggctgaactcaaatatgacacttca
acacctcaccccaagacagcaatctgactaatcaaacaaaaggagttctc
ggccacaataacctcttttctcctcttcgtgagacttatcattatctgaa
tttatcttgcttttttattgcccagtgcctctctgactcctcagtgttcc
agtcctacccacatggagtgtagattcatgagagtgagtttaaactcgct
atctataaaaatacttggcacaagaagtgggagtgggtgggtaggggagt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42990261_42991303
seq2: B6Ng01-155G03.b_145_1162

seq1  TCAGAGGTAGGGTTAGTGTAGATGTTTTCCCAATCTGTTGGTTCTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTAGGGTTAGTGTAGATGTTTTCCCAATCTGTTGGTTCTCATTT  50

seq1  AGTCCTATTAACAGTGTCCTTTGCCTTACAGAAGCTTTTCAATTTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTATTAACAGTGTCCTTTGCCTTACAGAAGCTTTTCAATTTCATGA  100

seq1  GGTCCCATTTATCAATTGTTGATCTTAGAATCTGAGCTATTGGGGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATTTATCAATTGTTGATCTTAGAATCTGAGCTATTGGGGTTCTG  150

seq1  TTCAAGAAAATTTCCCCAGTGCCACTGCATTTGAGGCTATTTCCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAATTTCCCCAGTGCCACTGCATTTGAGGCTATTTCCCACTTT  200

seq1  CTTTTCTATTAGTTTCGGTGTATCTGGTTTTATGTAGAGGTCCTTGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATTAGTTTCGGTGTATCTGGTTTTATGTAGAGGTCCTTGATCC  250

seq1  ACTTAGAATTGAGCTTTGTACAAGGGGGTAAGAATGGACCAATTTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAATTGAGCTTTGTACAAGGGGGTAAGAATGGACCAATTTGCATT  300

seq1  CTTCTACATGCAGACCGCCAGTTAGACCAGAACCATTTGTTGGAGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACATGCAGACCGCCAGTTAGACCAGAACCATTTGTTGGAGATGCT  350

seq1  TTCCTTTTTCCACTGTATGGTCTTGGGTTCTTTGTCAAAGATCAAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCCACTGTATGGTCTTGGGTTCTTTGTCAAAGATCAAGTGTC  400

seq1  TGTAGGTGTATGGGTTTATTTCTGGGTCTCAATTCTCTGTCACCAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTATGGGTTTATTTCTGGGTCTCAATTCTCTGTCACCAATTGA  450

seq1  CCTGTCCGTCTCTGTTCCAATACCATGTGGCTTTCATTACCATTGCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCGTCTCTGTTCCAATACCATGTGGCTTTCATTACCATTGCTCTC  500

seq1  ACTCTTTATAACACTGCTCAGAGGGAGTCTCTCAAAGAGAATTAGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTATAACACTGCTCAGAGGGAGTCTCTCAAAGAGAATTAGAAATC  550

seq1  ATAAAAATAAGAAAGGGGGAGAAACAGTTGATTAAAAAATAATCATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAGAAAGGGGGAGAAACAGTTGATTAAAAAATAATCATATAG  600

seq1  TGAAGCTGAAGACTATATTTATAATTCCTTAAAATACACTATATCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAAGACTATATTTATAATTCCTTAAAATACACTATATCTATAA  650

seq1  ATGTACTTCCTTTATAACTAATTAAAGCTGAAGAATGTACTTGTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTCCTTTATAACTAATTAAAGCTGAAGAATGTACTTGTATTTTT  700

seq1  CTTTTCTTTTCTTTTTAACCGTTGGCTTTCAGGCAATTCATAATTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTTAACCGTTGGCTTTCAGGCAATTCATAATTTAACT  750

seq1  TTGTCCTTAGAGATAAGCTCTGAAAACATGCTAAGTGGAAAAAAAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTAGAGATAAGCTCTGAAAACATGCTAAGTGGAAAAAAAACCAA  800

seq1  CATAAATGGTCATGTATTATATGAATCCATTTATTTAAAAAAATCTAGAT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATAAATGGTCATGTATTATATGAATCCATTTATTT-AAAAAATCTAGAT  849

seq1  TATGTTCTAGAAAAGTGCATAGAGGTACAAAGTAAATTAATAGTTTCACA  900
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  TATGTTCTAG-AAAGTGCATAGAGGTAC-AAGTAAATTAATAGTTTCACA  897

seq1  GAGTTGATAAAGAGGAGGAAGTTTGAGGTAGGAGACAAAAGGGAGTGGCT  950
      |||||||| ||||||||  ||||||| ||| ||||||||  |||||||||
seq2  GAGTTGAT-AAGAGGAG--AGTTTGA-GTA-GAGACAAA--GGAGTGGCT  940

seq1  AACTAATGAGCATGAGGTTTCTTTGTTAGTCTTGAATATGTATAAAAATT  1000
       ||| |||||||||||  ||||||||||||||||||| ||| || |||||
seq2  TACT-ATGAGCATGAG--TTCTTTGTTAGTCTTGAAT-TGT-TATAAATT  985

seq1  AAAAAGTGGCAATTATTTAAAAATTTTATGAATATACTAGACT  1043
        ||||||||||     ||  || ||||||   ||||||||||
seq2  --AAAGTGGCAA-----TATGAAATTTATG---ATACTAGACT  1018

seq1: chr19_43104838_43105294
seq2: B6Ng01-155G03.g_68_524 (reverse)

seq1  CACTCCCCTACCCACCCACTCCCACTTCTTGTGCCAAGTATTTTTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCTACCCACCCACTCCCACTTCTTGTGCCAAGTATTTTTATAGA  50

seq1  TAGCGAGTTTAAACTCACTCTCATGAATCTACACTCCATGTGGGTAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGTTTAAACTCACTCTCATGAATCTACACTCCATGTGGGTAGGAC  100

seq1  TGGAACACTGAGGAGTCAGAGAGGCACTGGGCAATAAAAAAGCAAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTGAGGAGTCAGAGAGGCACTGGGCAATAAAAAAGCAAGATAA  150

seq1  ATTCAGATAATGATAAGTCTCACGAAGAGGAGAAAAGAGGTTATTGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAATGATAAGTCTCACGAAGAGGAGAAAAGAGGTTATTGTGGC  200

seq1  CGAGAACTCCTTTTGTTTGATTAGTCAGATTGCTGTCTTGGGGTGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAACTCCTTTTGTTTGATTAGTCAGATTGCTGTCTTGGGGTGAGGTG  250

seq1  TTGAAGTGTCATATTTGAGTTCAGCCCAATAATGACAAATAGTCAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGTCATATTTGAGTTCAGCCCAATAATGACAAATAGTCAGCCAA  300

seq1  GAACAGATCTGGAAAGAGAATGCTGTAAGAGAAAAATAGCAAGTACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGATCTGGAAAGAGAATGCTGTAAGAGAAAAATAGCAAGTACACTA  350

seq1  GTTTTGAGGCAGCACAAGCTTGGAAAGTTTAAGGAACAGAAAGCAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGGCAGCACAAGCTTGGAAAGTTTAAGGAACAGAAAGCAGGCCA  400

seq1  GCACTGATGAACCCTAATGAAAGGGAATGGGAGGTGGAACATGAGTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGATGAACCCTAATGAAAGGGAATGGGAGGTGGAACATGAGTTCTC  450

seq1  AGAATTC  457
      |||||||
seq2  AGAATTC  457