BAC Information

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BAC

Clone NameB6Ng01-155H10
Chromosome19 (Build37)
Map Location 28,962,085 - 29,112,672
singlet/doubletdoublet
Overlap geneSlc1a1, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3
Upstream geneRfx3, LOC433235, Glis3, EG434460, EG627788, LOC545262
Downstream geneRcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H10.bB6Ng01-155H10.g
ACCDH950238DH950239
length2311,052
definitionDH950238|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H10, 5' end.DH950239|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,962,085 - 28,962,315)(29,111,606 - 29,112,672)
sequence
cattctagaacattctgctgcccagaaggctggggtagacaaccatactt
tctaaaacacgtacgcgcgcgcgcgcgtgcgtgcgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtaagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagaaactttatggggcttatagcctag
agaaaaagtcaaatgccagtgagtccattta
gaattcatcctccccccacccccacctgctggtaccacatgtccatcata
gcctctgcttgcagcaaaaaagccactgattgcacactttcccgtggacc
cggggtccagaagcatcctgtagacatctaattcctgagacctgaaatgg
gatacagtaaacacactcactggcttttccctctgttgtagaaatcggtg
tgttggccaagactttcattgaccaaggaaagctgatcccagatgacgtc
atgactcggctggcccttcacgagctcaaaacccttacccagtgtagctg
gctgttggatggtaagtgcagtgctctgagcatctctgcagctgatgtaa
tgagtgctggcaggagaacgagcagctgggacgacggacagccagtcacc
tatgagcctgtctttaaaatttaactagttaaccgaacaacttattttat
ttttgagacaaggtatgacgtatcccattctggcctccaatttgccgtgg
agctaatgatgaactacaacttttgatcctctggtctctgcctcccatgt
gctggcatcacaggaaggggtggccaagcttgcttatgtggtgttgtgat
tcctcggggctgcctgcatgctaggcaggcatattaccaactgagctcta
cccaaacctgtgtttgagcaggaagctgcttgcttccttttctgatagaa
actatggatgcataggtcaacattttattctcgggtttaatgaagccttg
cttctctgtgagatactgggatttagaagcgttcctggcgataggcagcc
tatgtgggataggcagcctatgtgggataggcagcctgtttagctgaagg
aatgcggtcctgaaaggttgagaatagacgctgcccagcacagggaagtg
gccaactttccaagagaccaacccatggccaccaagggagtaatctgggg
actgggcccaagaaagggcaccagggaaggcctggatgtgatcttgtttt
tatttctaattgttgtactggacatgcctttcttagaaaactcgagcgga
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28962085_28962315
seq2: B6Ng01-155H10.b_54_284

seq1  CATTCTAGAACATTCTGCTGCCCAGAAGGCTGGGGTAGACAACCATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAACATTCTGCTGCCCAGAAGGCTGGGGTAGACAACCATACTT  50

seq1  TCTAAAACACGTACGCGCGCGCGCGCGTGCGTGCGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACACGTACGCGCGCGCGCGCGTGCGTGCGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAAACTTTATGGGGCTTATAGCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAAACTTTATGGGGCTTATAGCCTAG  200

seq1  AGAAAAAGTCAAATGTTAGTGAGTCCATTTA  231
      |||||||||||||||  ||||||||||||||
seq2  AGAAAAAGTCAAATGCCAGTGAGTCCATTTA  231

seq1: chr19_29111606_29112672
seq2: B6Ng01-155H10.g_68_1119 (reverse)

seq1  CATCCGCTTCAGTTTTTCTAAAGGAAAAGGCATTGTTCCAGTACAACAAT  50
      ||||||||  || ||||||||    ||||||||   ||||||||||||||
seq2  CATCCGCTCGAG-TTTTCTAA---GAAAGGCAT--GTCCAGTACAACAAT  44

seq1  GAAGAAATAAAAAACAAAGATTCCACATTCCAGGCCCTTCCCCTGGTGCC  100
        |||||||||||   |||||  |||| ||||||||  | ||||||||||
seq2  -TAGAAATAAAAA--CAAGAT--CACA-TCCAGGCC--TTCCCTGGTGCC  86

seq1  CTGTCTTTGGCCCAGTCCCCAGATATACTCCCTTGGTGGCCATGGGTTGG  150
      || |||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CTTTCTTGGGCCCAGTCCCCAGAT-TACTCCCTTGGTGGCCATGGGTTGG  135

seq1  TCTCTTGGAAAGTTTGCCACTTCCCTGTGCTGGGCAGCGTCTATTCTCAA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGAAAGTTGGCCACTTCCCTGTGCTGGGCAGCGTCTATTCTCAA  185

seq1  CCTTCAAGCACCGCATTCCTTCAGCTAAACAGGCTGCCTATCCCACATAG  250
      ||||  || |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGGACCGCATTCCTTCAGCTAAACAGGCTGCCTATCCCACATAG  235

seq1  GCTGCCTATCCCACATAGGCTGCCTATCGCCAGGAACGCTTCTAAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTATCCCACATAGGCTGCCTATCGCCAGGAACGCTTCTAAATCCC  285

seq1  AGTATCTCACAGAGAAGCAAGGCTTCATTAAACCCGAGAATAAAATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCACAGAGAAGCAAGGCTTCATTAAACCCGAGAATAAAATGTTG  335

seq1  ACCTATGCATCCATAGTTTCTATCAGAAAAGGAAGCAAGCAGCTTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGCATCCATAGTTTCTATCAGAAAAGGAAGCAAGCAGCTTCCTGC  385

seq1  TCAAACACAGGTTTGGGTAGAGCTCAGTTGGTAATATGCCTGCCTAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACAGGTTTGGGTAGAGCTCAGTTGGTAATATGCCTGCCTAGCAT  435

seq1  GCAGGCAGCCCCGAGGAATCACAACACCACATAAGCAAGCTTGGCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCCCCGAGGAATCACAACACCACATAAGCAAGCTTGGCCACCC  485

seq1  CTTCCTGTGATGCCAGCACATGGGAGGCAGAGACCAGAGGATCAAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGATGCCAGCACATGGGAGGCAGAGACCAGAGGATCAAAAGTT  535

seq1  GTAGTTCATCATTAGCTCCACGGCAAATTGGAGGCCAGAATGGGATACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCATCATTAGCTCCACGGCAAATTGGAGGCCAGAATGGGATACGT  585

seq1  CATACCTTGTCTCAAAAATAAAATAAGTTGTTCGGTTAACTAGTTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTGTCTCAAAAATAAAATAAGTTGTTCGGTTAACTAGTTAAATT  635

seq1  TTAAAGACAGGCTCATAGGTGACTGGCTGTCCGTCGTCCCAGCTGCTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAGGCTCATAGGTGACTGGCTGTCCGTCGTCCCAGCTGCTCGT  685

seq1  TCTCCTGCCAGCACTCATTACATCAGCTGCAGAGATGCTCAGAGCACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCAGCACTCATTACATCAGCTGCAGAGATGCTCAGAGCACTGC  735

seq1  ACTTACCATCCAACAGCCAGCTACACTGGGTAAGGGTTTTGAGCTCGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCATCCAACAGCCAGCTACACTGGGTAAGGGTTTTGAGCTCGTGA  785

seq1  AGGGCCAGCCGAGTCATGACGTCATCTGGGATCAGCTTTCCTTGGTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGCCGAGTCATGACGTCATCTGGGATCAGCTTTCCTTGGTCAAT  835

seq1  GAAAGTCTTGGCCAACACACCGATTTCTACAACAGAGGGAAAAGCCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTGGCCAACACACCGATTTCTACAACAGAGGGAAAAGCCAGTG  885

seq1  AGTGTGTTTACTGTATCCCATTTCAGGTCTCAGGAATTAGATGTCTACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTTACTGTATCCCATTTCAGGTCTCAGGAATTAGATGTCTACAG  935

seq1  GATGCTTCTGGACCCCGGGTCCACGGGAAAGTGTGCAATCAGTGGCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCTGGACCCCGGGTCCACGGGAAAGTGTGCAATCAGTGGCTTTT  985

seq1  TTGCTGCAAGCAGAGGCTATGATGGACATGTGGTACCAGCAGGTGGGGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCAAGCAGAGGCTATGATGGACATGTGGTACCAGCAGGTGGGGGT  1035

seq1  GGGGGGAGGATGAATTC  1067
      |||||||||||||||||
seq2  GGGGGGAGGATGAATTC  1052