BAC Information

Click to search

BAC

Clone NameB6Ng01-155P24
Chromosome19 (Build37)
Map Location 41,000,586 - 41,124,188
singlet/doubletdoublet
Overlap geneBlnk, LOC100043155, Dntt
Upstream geneLOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518
Downstream geneTmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P24.bB6Ng01-155P24.g
ACCDH950624DH950625
length1,027596
definitionDH950624|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P24, 5' end.DH950625|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,123,167 - 41,124,188)(41,000,586 - 41,001,181)
sequence
gaattcaataagcaatcctgctgctgctgatcttagccaccatttgtcag
acaccagagattttctattgaatccccgagactttcattgaatcccgggt
tagcacagacagaaaatgggccatgaactgttaagcaccaccccaggttg
taccagcacttctaaagtctcatttaggcctgttttactattggctccga
atgcagggcctgggcttctaatgactatctctacccagggtccagaggaa
aactaccttgaaactagcgatgcaaagagggctcctctgtcacctctcaa
ctccagcagatgtcttagcataggacaatggcacaaaaacaaacatcaat
gagtttccagccttggcaacaggcctgggggtggggaggtattctttggt
ctttcagtgagtctttaatcttcccctattctcccctacccaaccccccg
aacgtcccccactcccaacccctggagcagagaatcgagaattggaaaag
tattctgactcttgtcatgcctatcttgctatcactgaaggggttctcca
gtgcaccttctcctgacttctcaggaggggtgacagggggggacatggaa
tggtctcacagatgaatttggatctgcatctgaaatctagctttcattta
taaatctcatggctctcgggggctggctatttctagtttgtttttgtttt
tttttgtttttgttttttcaagacagggttttctctgtatagctagggct
gtcctggaactcactctgtagagcaggctggcctcgaactcagaaattct
cctgcctctgcttccaagtgctgggattaaaaggcgtgtgccaccacagc
ctcaaagattaatttacttattttatgtgagtacactatagctggtcaga
atcaccagaaagagggcattagatctcattacagatggttgtgagccagc
acgtgggttgctgggaattgaactcaggactctggtagagcagtcaggga
tctaacgactgaagccatctcctccag
gaattctacttgcagaggaaggctttggaaaagcaggtagggttacctaa
cctcttagaggatggagatggggaaaggttggtatgttaggtacgatatt
gctcctaatagtggagattggaggatgcctctgcagagagtggcttatga
atcccagcttttgttccaagaaacccaccacagccgtgctgagtattaaa
gtactatggagttacagtttttatttgtttgttgttgttgtttttgtttt
ttacaaactatgattcttcattttgttggactgtgctacctgaaggggga
cagctgaggacagaacaaaagaggctgttttgagcaagggtcacggtggc
agcagagggagcaaatgaagatttccttacattaagaagtgttttcatgc
agtactgagcaaaactgagaggggcctgtacttcctgccatgagctggtg
ctctttacaaaggactgtctttttttttttttttttaaatatagaataga
gtttactcggggcatggggacgggagtcaagagggtagtagaggcagaga
aaggaagaggggggagagagaaagagagagataaaaagagaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41123167_41124188
seq2: B6Ng01-155P24.b_47_1073 (reverse)

seq1  CTGGA-GAGATGGC-TCAGTGGTTAAGATCACTGACTGCTCTACCAGAGG  48
      ||||| |||||||| ||||| ||| ||||| ||||||||||||||||| |
seq2  CTGGAGGAGATGGCTTCAGTCGTT-AGATCCCTGACTGCTCTACCAGA-G  48

seq1  TCCTGAGTTCAATTCCCAGCAA-CCACGTGGTGGCTCACAACCATCTGTA  97
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TCCTGAGTTCAATTCCCAGCAACCCACGTGCTGGCTCACAACCATCTGTA  98

seq1  ATGGGATCTGATGCCCTC-TTCTGGTGTATCTGA-CAGCTATAGTGTACT  145
      ||| ||||| |||||||| ||||||||  ||||| |||||||||||||||
seq2  ATGAGATCTAATGCCCTCTTTCTGGTGATTCTGACCAGCTATAGTGTACT  148

seq1  CACATAAAATAAGTAAATAAATCTTTG-GGCTGTGGTGGCACACGCC-TT  193
      |||||||||||||||||| |||||||| ||||||||||||||||||| ||
seq2  CACATAAAATAAGTAAATTAATCTTTGAGGCTGTGGTGGCACACGCCTTT  198

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGAGAATTTCTGAGTTCGAGGC  243
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTT-GGAAGCAGAGGCAGGAGAATTTCTGAGTTCGAGGC  247

seq1  CAGCCTGCTCTACAGAGTGAGTTCCAGGACAGCCCTAGCTATACAGAG-A  292
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGCCTGCTCTACAGAGTGAGTTCCAGGACAGCCCTAGCTATACAGAGAA  297

seq1  AACCCTGTCTTGAAAAAACAAAAACAAAAAAAAACAAAAACAAACTAGAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTTGAAAAAACAAAAACAAAAAAAAACAAAAACAAACTAGAA  347

seq1  ATAGCCAGCCCCCGAGAGCCATGAGATTTATAAATGAAAGCTAGATTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAGCCCCCGAGAGCCATGAGATTTATAAATGAAAGCTAGATTTCA  397

seq1  GATGCAGATCCAAATTCATCTGTGAGACCATTCCATGTCCCCCCCTGTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGATCCAAATTCATCTGTGAGACCATTCCATGTCCCCCCCTGTCA  447

seq1  CCCCTCCTGAGAAGTCAGGAGAAGGTGCACTGGAGAACCCCTTCAGTGAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTGAGAAGTCAGGAGAAGGTGCACTGGAGAACCCCTTCAGTGAT  497

seq1  AGCAAGATAGGCATGACAAGAGTCAGAATACTTTTCCAATTCTCGATTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATAGGCATGACAAGAGTCAGAATACTTTTCCAATTCTCGATTCT  547

seq1  CTGCTCCAGGGGTTGGGAGTGGGGGACGTTCGGGGGGTTGGGTAGGGGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGGGTTGGGAGTGGGGGACGTTCGGGGGGTTGGGTAGGGGAG  597

seq1  AATAGGGGAAGATTAAAGACTCACTGAAAGACCAAAGAATACCTCCCCAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAGATTAAAGACTCACTGAAAGACCAAAGAATACCTCCCCAC  647

seq1  CCCCAGGCCTGTTGCCAAGGCTGGAAACTCATTGATGTTTGTTTTTGTGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCCTGTTGCCAAGGCTGGAAACTCATTGATGTTTGTTTTTGTGC  697

seq1  CATTGTCCTATGCTAAGACATCTGCTGGAGTTGAGAGGTGACAGAGGAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTATGCTAAGACATCTGCTGGAGTTGAGAGGTGACAGAGGAGC  747

seq1  CCTCTTTGCATCGCTAGTTTCAAGGTAGTTTTCCTCTGGACCCTGGGTAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCATCGCTAGTTTCAAGGTAGTTTTCCTCTGGACCCTGGGTAG  797

seq1  AGATAGTCATTAGAAGCCCAGGCCCTGCATTCGGAGCCAATAGTAAAACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTCATTAGAAGCCCAGGCCCTGCATTCGGAGCCAATAGTAAAACA  847

seq1  GGCCTAAATGAGACTTTAGAAGTGCTGGTACAACCTGGGGTGGTGCTTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAATGAGACTTTAGAAGTGCTGGTACAACCTGGGGTGGTGCTTAA  897

seq1  CAGTTCATGGCCCATTTTCTGTCTGTGCTAACCCGGGATTCAATGAAAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGGCCCATTTTCTGTCTGTGCTAACCCGGGATTCAATGAAAGT  947

seq1  CTCGGGGATTCAATAGAAAATCTCTGGTGTCTGACAAATGGTGGCTAAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGATTCAATAGAAAATCTCTGGTGTCTGACAAATGGTGGCTAAGA  997

seq1  TCAGCAGCAGCAGGATTGCTTATTGAATTC  1022
      ||||||||||||||||||||||||||||||
seq2  TCAGCAGCAGCAGGATTGCTTATTGAATTC  1027

seq1: chr19_41000586_41001181
seq2: B6Ng01-155P24.g_69_664

seq1  GAATTCTACTTGCAGAGGAAGGCTTTGGAAAAGCAGGTAGGGTTACCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTGCAGAGGAAGGCTTTGGAAAAGCAGGTAGGGTTACCTAA  50

seq1  CCTCTTAGAGGATGGAGATGGGGAAAGGTTGGTATGTTAGGTACGATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGAGGATGGAGATGGGGAAAGGTTGGTATGTTAGGTACGATATT  100

seq1  GCTCCTAATAGTGGAGATTGGAGGATGCCTCTGCAGAGAGTGGCTTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAATAGTGGAGATTGGAGGATGCCTCTGCAGAGAGTGGCTTATGA  150

seq1  ATCCCAGCTTTTGTTCCAAGAAACCCACCACAGCCGTGCTGAGTATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCTTTTGTTCCAAGAAACCCACCACAGCCGTGCTGAGTATTAAA  200

seq1  GTACTATGGAGTTACAGTTTTTATTTGTTTGTTGTTGTTGTTTTTGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGGAGTTACAGTTTTTATTTGTTTGTTGTTGTTGTTTTTGTTTT  250

seq1  TTACAAACTATGATTCTTCATTTTGTTGGACTGTGCTACCTGAAGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACTATGATTCTTCATTTTGTTGGACTGTGCTACCTGAAGGGGGA  300

seq1  CAGCTGAGGACAGAACAAAAGAGGCTGTTTTGAGCAAGGGTCACGGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGACAGAACAAAAGAGGCTGTTTTGAGCAAGGGTCACGGTGGC  350

seq1  AGCAGAGGGAGCAAATGAAGATTTCCTTACATTAAGAAGTGTTTTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGGAGCAAATGAAGATTTCCTTACATTAAGAAGTGTTTTCATGC  400

seq1  AGTACTGAGCAAAACTGAGAGGGGCCTGTACTTCCTGCCATGAGCTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGAGCAAAACTGAGAGGGGCCTGTACTTCCTGCCATGAGCTGGTG  450

seq1  CTCTTTACAAAGGACTGTCTTTTTTTTTTTTTTTTTAAATATAGAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACAAAGGACTGTCTTTTTTTTTTTTTTTTTAAATATAGAATAGA  500

seq1  GTTTACTCGGGGCATGGGGACGGGAGTCAAGAGGGTAGTAGAGGCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCGGGGCATGGGGACGGGAGTCAAGAGGGTAGTAGAGGCAGAGA  550

seq1  AAGGAAGAGGGGGGAGAGAGAAAGAGAGAGAGAAAAAGAGAAAGGA  596
      ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGAAGAGGGGGGAGAGAGAAAGAGAGAGATAAAAAGAGAAAGGA  596