BAC Information

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BAC

Clone NameB6Ng01-156A08
Chromosome19 (Build37)
Map Location 25,282,785 - 25,433,012
singlet/doubletdoublet
Overlap geneAnkrd15, LOC433233
Upstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A08.bB6Ng01-156A08.g
ACCDH950639DH950640
length1,0411,132
definitionDH950639|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A08, 5' end.DH950640|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,282,785 - 25,283,828)(25,431,862 - 25,433,012)
sequence
gaattcagcaattgataggaaactcaatggctctaatccaccaggaattg
aaccaagggcttcgtggcaatagcaggtttaaaagtttagcaactcgagt
gtttgcaggggtcctagtggccacgcgcagagtggttttgggggaggttt
gggagacagaaaagcgttacagcctgtgtcttaaagagtaactggaaatg
agaaaaggaaaatacctgctccatctctccccctcccccaccttgtcagg
cttcgcttggtcaaaaaagcatttagagaagcttcggggattgaagtcag
tgtagcaatcgaagtaaaaatcttagcaagtgggtgcggtcctaacattt
cttcctgtggccccttcaagtgggcacccagaccatttacctagatgtgt
gtgcttggaatgaaagagcgaatggaagtgtgggggaggggctagtaagg
acccagaggagaacctccaccccaggcacgcttgcttccacccaggatcc
aggggacagccagaggtcaaagtccgtcccacaagaagggaacaagagcc
caccatgacccaagagaggcatcgcaccctgagtctactgtggaaggttg
gggaagatgctggctgcatacagtgaagagaccaagagggaaagaaaggg
gacgctgtgcactgagggaaagagatggggcctcctgaggctgactgagg
gagtggaagaaaggggttggtcaagaacatggggaagcctgtggcggtgg
cggtggtggcggcagacgcctttaatcccacactccagagggagagacat
ctctgagtttgtggccagcctggcctacagagtgagttgcaggacacgga
actacacagaaaccctgtctggaaaccccacaaagagcccatgtgtgttg
agaggagaaggcacgctgaggacagggtctagagggagagtatccacgtt
aggaaccccttctcctgaggaccgaatctgtcatcttctttccagagagg
aatcaatcagtaatttgaccgaagcagtttccaacccttct
gaattccagatgggcatggatcattttttttgttttttgttttttgtttt
agtagccgagcaacaaagtccttggaactggaagatcctatggagtgata
taccctgaatgtaagaagatggttaagacactgatgcaaagcttccatta
ctaaggaataggtcgagaaagaaccacacagtacattcttaggtgagcca
agtccttgctctttcacaccagtcaacctgcctctctctggctgctctgc
ctacatctcaatgattaccatgactaaaatccccattttgatttcagtat
atccaatagctctcgacagtgtatgtaaaagataggacactgaagggggt
gcacctgaacgggacaggaacaccccatacaacagccaagcgaccatcaa
ggagaactcggctgaggagccaaggtgattgccaaaggaaggtgacacca
ccagccccaagcctctcacatcactgagcctactgagtccatcaacccca
agatctgtttttgaaaaaagagagtattcacttccttaatacttaagaca
acttcctgtatgtctcaatttcctgtatgtctcaatttaagaattccttt
ttaaatctgagatactaggtatcctgaatgagtatctactgccagggcaa
gtatgttgaaaggcacctagctaaaatgttccaaatatattaatctgtac
gtgtgtgtgtgtgttggaactaggacttcttgtaaactaagaaggcacat
taatctccgctctgagttacacaccatccttaattaaaaatggttgtttt
aagacagggtctctaagttgccaaggctggccttgaaccccagttctaac
ccttgtcctaaccctgtccctaaccctccctgtagaccaggtaggcttga
agctctgcctgagcttcctagctgagattccagtcctgtaccacagcctg
gctacatcaaacgcttaacttaaagaatgtactcatttctgggctgttct
tcacggagcttctcagtgagttcccagataagctatacttcgtgaccgga
gagctactacccaagtccaggcttacctcagactgtgactcagaaattct
ttggtgtaggaccagcaatctgctgaataagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25282785_25283828
seq2: B6Ng01-156A08.b_45_1085

seq1  GAATTCAGCAATTGATAGGAAACTCAATGGCTCTAATCCACCAGGAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAATTGATAGGAAACTCAATGGCTCTAATCCACCAGGAATTG  50

seq1  AACCAAGGGCTTCGTGGCAATAGCAGGTTTAAAAGTTTAGCAACTCGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGGCTTCGTGGCAATAGCAGGTTTAAAAGTTTAGCAACTCGAGT  100

seq1  GTTTGCAGGGGTCCTAGTGGCCACGCGCAGAGTGGTTTTGGGGGAGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGGGGTCCTAGTGGCCACGCGCAGAGTGGTTTTGGGGGAGGTTT  150

seq1  GGGAGACAGAAAAGCGTTACAGCCTGTGTCTTAAAGAGTAACTGGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAGAAAAGCGTTACAGCCTGTGTCTTAAAGAGTAACTGGAAATG  200

seq1  AGAAAAGGAAAATACCTGCTCCATCTCTCCCCCTCCCCCACCTTGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAAATACCTGCTCCATCTCTCCCCCTCCCCCACCTTGTCAGG  250

seq1  CTTCGCTTGGTCAAAAAAGCATTTAGAGAAGCTTCGGGGATTGAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTTGGTCAAAAAAGCATTTAGAGAAGCTTCGGGGATTGAAGTCAG  300

seq1  TGTAGCAATCGAAGTAAAAATCTTAGCAAGTGGGTGCGGTCCTAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAATCGAAGTAAAAATCTTAGCAAGTGGGTGCGGTCCTAACATTT  350

seq1  CTTCCTGTGGCCCCTTCAAGTGGGCACCCAGACCATTTACCTAGATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGGCCCCTTCAAGTGGGCACCCAGACCATTTACCTAGATGTGT  400

seq1  GTGCTTGGAATGAAAGAGCGAATGGAAGTGTGGGGGAGGGGCTAGTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGAATGAAAGAGCGAATGGAAGTGTGGGGGAGGGGCTAGTAAGG  450

seq1  ACCCAGAGGAGAACCTCCACCCCAGGCACGCTTGCTTCCACCCAGGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGGAGAACCTCCACCCCAGGCACGCTTGCTTCCACCCAGGATCC  500

seq1  AGGGGACAGCCAGAGGTCAAAGTCCGTCCCACAAGAAGGGAACAAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGCCAGAGGTCAAAGTCCGTCCCACAAGAAGGGAACAAGAGCC  550

seq1  CACCATGACCCAAGAGAGGCATCGCACCCTGAGTCTACTGTGGAAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCCAAGAGAGGCATCGCACCCTGAGTCTACTGTGGAAGGTTG  600

seq1  GGGAAGATGCTGGCTGCATACAGTGAAGAGACCAAGAGGGAAAGAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGCTGGCTGCATACAGTGAAGAGACCAAGAGGGAAAGAAAGGG  650

seq1  GACGCTGTGCACTGAGGGAAAGAGATGGGGCCTCCTGAGGCTGACTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGTGCACTGAGGGAAAGAGATGGGGCCTCCTGAGGCTGACTGAGG  700

seq1  GAGTGGAAGAAAGGGGTTGGTCAAGAACATGGGGAAGCCTGTGGCGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGAAAGGGGTTGGTCAAGAACATGGGGAAGCCTGTGGCGGTGG  750

seq1  CGGTGGTGGCGGCAGACGCCTTTAATCCCACACTCCAGAGGGAGAGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTGGCGGCAGACGCCTTTAATCCCACACTCCAGAGGGAGAGACAT  800

seq1  CTCTGAGTTTGTGGCCAGCCTGGCCTACAGAGTGAGTTGCAGGACACGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTTGTGGCCAGCCTGGCCTACAGAGTGAGTTGCAGGACACGGA  850

seq1  ACTACACAGAAACCCTGTCTGGAAACCCCACAAAAGAGCCCATG-GTGTT  899
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACTACACAGAAACCCTGTCTGGAAACCCCAC-AAAGAGCCCATGTGTGTT  899

seq1  GAGAGGAGAAGGCACGCTGAGGACAGGGTCAAGAGGTAGAGTATCCACG-  948
      |||||||||||||||||||||||||||||| ||||| |||||||||||| 
seq2  GAGAGGAGAAGGCACGCTGAGGACAGGGTCTAGAGGGAGAGTATCCACGT  949

seq1  TAGGAACCCCTCCTCCTGAGGACCCGAATCTGTCATCTTCCTTCCCAGAG  998
      ||||||||||| |||||||||| |||||||||||||||| ||| ||||||
seq2  TAGGAACCCCTTCTCCTGAGGA-CCGAATCTGTCATCTT-CTTTCCAGAG  997

seq1  AGGAATCAAATCAAGTAAGTGGAACGAAGCAGTTTCCAGCCCTTCT  1044
      ||||||| |||| ||||| | || |||||||||||||| |||||||
seq2  AGGAATC-AATC-AGTAATTTGACCGAAGCAGTTTCCAACCCTTCT  1041

seq1: chr19_25431862_25433012
seq2: B6Ng01-156A08.g_69_1200 (reverse)

seq1  ACTTATTCAAACAGATTGCTGGTCCCTACACCCAAGGATTTCTGAGTCAC  50
      |||||||| | |||||||||||| |||||||| ||| |||||||||||||
seq2  ACTTATTC-AGCAGATTGCTGGT-CCTACACCAAAGAATTTCTGAGTCAC  48

seq1  CAAGTCTGGGGTGAGGCCTGGGAACTTGGGGTAGTAGGCTCTCCGGTCAC  100
        |||||| ||| | ||||||  |||| |||||||| |||||||||||||
seq2  --AGTCTGAGGT-AAGCCTGG--ACTT-GGGTAGTA-GCTCTCCGGTCAC  91

seq1  GGAAAGTATAGCTTTATCTGGGGACCACACTTGAGAAGCTCCGTGAAGGA  150
      |  ||||||||| |||||| |||| | ||| |||||||||||||||| ||
seq2  G--AAGTATAGC-TTATCT-GGGAACTCAC-TGAGAAGCTCCGTGAA-GA  135

seq1  ACAGCCCAGGAATGAGTACATTTCTTTAAGTTAAGCGTTTGATGTTAGCC  200
      ||||||||| |||||||||| ||||||||||||||||||||||| |||||
seq2  ACAGCCCAGAAATGAGTACA-TTCTTTAAGTTAAGCGTTTGATG-TAGCC  183

seq1  AGGCCTGTTGGTACAGGACTGGAATCTCAGCTAGGAAGCTCAGGCAGAGC  250
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-CTG-TGGTACAGGACTGGAATCTCAGCTAGGAAGCTCAGGCAGAGC  231

seq1  TTCAAGCCTACCTGGTCTACAGGGAGGGTTAGGGACAGGGTTAGGACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCTACCTGGTCTACAGGGAGGGTTAGGGACAGGGTTAGGACAAG  281

seq1  GGTTAGAACTGGGGTTCAAGGCCAGCCTTGGCAACTTAGAGACCCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAACTGGGGTTCAAGGCCAGCCTTGGCAACTTAGAGACCCTGTCT  331

seq1  TAAAACAACCATTTTTAATTAAGGATGGTGTGTAACTCAGAGCGGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAACCATTTTTAATTAAGGATGGTGTGTAACTCAGAGCGGAGATT  381

seq1  AATGTGCCTTCTTAGTTTACAAGAAGTCCTAGTTCCAACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCTTCTTAGTTTACAAGAAGTCCTAGTTCCAACACACACACACA  431

seq1  CGTACAGATTAATATATTTGGAACATTTTAGCTAGGTGCCTTTCAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGATTAATATATTTGGAACATTTTAGCTAGGTGCCTTTCAACATA  481

seq1  CTTGCCCTGGCAGTAGATACTCATTCAGGATACCTAGTATCTCAGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTGGCAGTAGATACTCATTCAGGATACCTAGTATCTCAGATTTA  531

seq1  AAAAGGAATTCTTAAATTGAGACATACAGGAAATTGAGACATACAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATTCTTAAATTGAGACATACAGGAAATTGAGACATACAGGAAG  581

seq1  TTGTCTTAAGTATTAAGGAAGTGAATACTCTCTTTTTTCAAAAACAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAAGTATTAAGGAAGTGAATACTCTCTTTTTTCAAAAACAGATC  631

seq1  TTGGGGTTGATGGACTCAGTAGGCTCAGTGATGTGAGAGGCTTGGGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTGATGGACTCAGTAGGCTCAGTGATGTGAGAGGCTTGGGGCTG  681

seq1  GTGGTGTCACCTTCCTTTGGCAATCACCTTGGCTCCTCAGCCGAGTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCACCTTCCTTTGGCAATCACCTTGGCTCCTCAGCCGAGTTCTC  731

seq1  CTTGATGGTCGCTTGGCTGTTGTATGGGGTGTTCCTGTCCCGTTCAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGGTCGCTTGGCTGTTGTATGGGGTGTTCCTGTCCCGTTCAGGTG  781

seq1  CACCCCCTTCAGTGTCCTATCTTTTACATACACTGTCGAGAGCTATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTTCAGTGTCCTATCTTTTACATACACTGTCGAGAGCTATTGGA  831

seq1  TATACTGAAATCAAAATGGGGATTTTAGTCATGGTAATCATTGAGATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAAATCAAAATGGGGATTTTAGTCATGGTAATCATTGAGATGTA  881

seq1  GGCAGAGCAGCCAGAGAGAGGCAGGTTGACTGGTGTGAAAGAGCAAGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCAGCCAGAGAGAGGCAGGTTGACTGGTGTGAAAGAGCAAGGAC  931

seq1  TTGGCTCACCTAAGAATGTACTGTGTGGTTCTTTCTCGACCTATTCCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCACCTAAGAATGTACTGTGTGGTTCTTTCTCGACCTATTCCTTA  981

seq1  GTAATGGAAGCTTTGCATCAGTGTCTTAACCATCTTCTTACATTCAGGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAAGCTTTGCATCAGTGTCTTAACCATCTTCTTACATTCAGGGT  1031

seq1  ATATCACTCCATAGGATCTTCCAGTTCCAAGGACTTTGTTGCTCGGCTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTCCATAGGATCTTCCAGTTCCAAGGACTTTGTTGCTCGGCTAC  1081

seq1  TAAAACAAAAAACAAAAAACAAAAAAAATGATCCATGCCCATCTGGAATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAAAACAAAAAACAAAAAAAATGATCCATGCCCATCTGGAATT  1131

seq1  C  1151
      |
seq2  C  1132