BAC Information

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BAC

Clone NameB6Ng01-156G09
Chromosome19 (Build37)
Map Location 55,168,510 - 55,328,764
singlet/doubletdoublet
Overlap geneGpam, Tectb, Gucy2g, Acsl5
Upstream geneLOC100043004
Downstream geneZdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr, LOC100043484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156G09.bB6Ng01-156G09.g
ACCDH950914DH950915
length1,1711,142
definitionDH950914|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G09, 5' end.DH950915|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,327,574 - 55,328,764)(55,168,510 - 55,169,667)
sequence
gaattccaagcagcttcctgaagtgggcagggaggagggatttgggatgc
ctctgtcacgcgtgcaggagccccgtcctaggatcacacccggctccaga
tcccttaccctgggaagggccgcacgcacgccttggagcttccgagtgag
gctttctggctccggcttcttgctggcaggagagcctcggtcctcccttc
ctcaccccgggcttctccgcgggcagggtgacttcagagcgtccatgcag
gcaggcaggcaggcagcctggctagtggccccacttctgccctgccctga
tctgtcccagccaggccatagccgggctttctgacatgctggtgctgggg
acttcacttcctggtttggcttttttttccctcctccttcacaactgaaa
gtggaaccgcttttgactaggaggagacagatatccaaagctaccctagc
cggttttcaaagcctttaacctcaatccccaggggctgaaacacgagcca
cctttgcatcaacacagtccacctgctcccgctggtcccactagctcttc
tccaagatgaaaatccaaatgaaaacgagttgaggtggccctgggttcat
tgccagagaaacggaggtgacgttgttccccgctgcgttcgcaggacagg
aaagtccagctagagggacctccgcccttaggttagatgcagcacgactg
tctctttctctgtgtagctcctttcgccagtccccagacctccctgattc
aaaaagccaggcacctctgcacctcgcagagacaacagaatagataaata
agccaggaaccacgggggcagagagccattcagttgaagtggctcccttt
ccgcagacacaccagctcagctccggctctcaccccgccaagtttaagga
tgaaatgtgttctgtgacccctcttacacctcagcattatccgggtcaca
gtgtcttaatcgatcaccctttgagttctggtctcccaaggacacaatga
gacctcggtctagaatgggaagaaagatgacaagtcttctctctctccta
attcgctgcaactcacgaccgcagaatcaagtagcaattttcccggcttg
atcctccaaggattgaacggaagtcaagtgagaacttcactagaggtaac
taccttagagatccttctttg
gaattcacagctgatgcgatggtcaagaattccactaacgtctctagaag
acgtttaaaatccgagcagaagagttaggggttactgcttaaaaacttac
agaatgaagaaaatacatgttttattgagcagtacttcttatacttcaaa
gatagtcacaaactcaagtttaactttgaaaccctaaaaccaaaggcaat
ggtatttcttccttcccacaccacggtgccctccatccctagagagcggg
gacccacaatcagcttccatcacagaagtcacagctttcagagttcccca
aatacaaactatcatcctaaataccacagttactcgcgggcccctggccc
acaagacacacgagaattattaccattgaatgagtgagaaaactgaggct
gccaaaacttgagtcaatctcagagctctctattccctaaaatgactggc
cagttaataccaaaaagtacagctaccagtcactttacaggtgatcctta
tcaatgtgagcaagatcaaaaaaatccaaaaataaaaagtgccaacaaga
tataaaaatcacttaatctctttacagaaaactggagtttcaaaaaacag
aggcagatcccaagaagtataaaaacatttactaacaaattgtcttaaat
gcatggaggaactgcaagaagaaagtagtttcatcctctatccctgctgc
acagaaagcagcagcctgttacactatagccatccaaccccaggccatag
ccaccactccacaacagcctgttacactatagccatccaaccccaggcca
cagccaccactccacaacagcctgtttacactatagccgtccaaccccag
gccacagccaccacttcacaacagcctgttacactatagccatccaaccc
caggccatagcacactccacaacagcctgttacactatagccatccaacc
ccaggccacagcaccactcacaacagcctgttacactaatagccatccaa
ccccaggccacagcaccactccacacagctgttacctatagcatcaccca
gtcatagcaccactccaaaacagctgtttaccttatagccatcaacccag
gcacagtcacccttggacagttattcctgtgccagcttagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_55327574_55328764
seq2: B6Ng01-156G09.b_47_1217 (reverse)

seq1  CAAAGAAGGAATCCTAAGGTAGGCTAGCACTCTAGTGAAGTCTTCACCTT  50
      ||||||||||   |||||||| | ||   ||||||||||||  ||| |||
seq2  CAAAGAAGGATCTCTAAGGTA-GTTA--CCTCTAGTGAAGTTCTCA-CTT  46

seq1  GAACTTCCTGTCAATCCTTGGAGGGATCAAGGCCGGGAAAA-TGCTACTT  99
      | ||||||  |||||||||||| ||||||| |||||||||| ||||||||
seq2  G-ACTTCCGTTCAATCCTTGGA-GGATCAA-GCCGGGAAAATTGCTACTT  93

seq1  GATTCTGCGTGTCGTGAGGTTGCAGCGGGAGTGGGGGAGAGGGAGGGGGC  149
      ||||||||| ||||||| |||||||| | | | || ||||| || |    
seq2  GATTCTGCG-GTCGTGA-GTTGCAGC-GAATTAGGAGAGAGAGAAG----  136

seq1  AGAACCTGTCATCTCTCTTCCAATTCTGAGACCGAGGTCTCCTTGTGTCC  199
         || |||||||| |||||| ||||| ||||||||||||| ||||||||
seq2  ---ACTTGTCATCTTTCTTCCCATTCT-AGACCGAGGTCTCATTGTGTCC  182

seq1  CTGGGAGACCAGAACCTCAAAGGGTGATCGATTAAGACAACTGTGAACCC  249
       ||||||||||||| ||||||||||||||||||||||| |||||| ||||
seq2  TTGGGAGACCAGAA-CTCAAAGGGTGATCGATTAAGAC-ACTGTG-ACCC  229

seq1  GGATAATGCTGAGGTGTAAGAGGGGTCACAGAACACATTTCATCCTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGCTGAGGTGTAAGAGGGGTCACAGAACACATTTCATCCTTAAA  279

seq1  CTTGGCGGGGTGAGAGCCGGAGCTGAGCTGGTGTGTCTGCGGAAAGGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGGGGTGAGAGCCGGAGCTGAGCTGGTGTGTCTGCGGAAAGGGAG  329

seq1  CCACTTCAACTGAATGGCTCTCTGCCCCCGTGGTTCCTGGCTTATTTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAACTGAATGGCTCTCTGCCCCCGTGGTTCCTGGCTTATTTATC  379

seq1  TATTCTGTTGTCTCTGCGAGGTGCAGAGGTGCCTGGCTTTTTGAATCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTGTCTCTGCGAGGTGCAGAGGTGCCTGGCTTTTTGAATCAGG  429

seq1  GAGGTCTGGGGACTGGCGAAAGGAGCTACACAGAGAAAGAGACAGTCGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGGGGACTGGCGAAAGGAGCTACACAGAGAAAGAGACAGTCGTG  479

seq1  CTGCATCTAACCTAAGGGCGGAGGTCCCTCTAGCTGGACTTTCCTGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTAACCTAAGGGCGGAGGTCCCTCTAGCTGGACTTTCCTGTCCT  529

seq1  GCGAACGCAGCGGGGAACAACGTCACCTCCGTTTCTCTGGCAATGAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACGCAGCGGGGAACAACGTCACCTCCGTTTCTCTGGCAATGAACCC  579

seq1  AGGGCCACCTCAACTCGTTTTCATTTGGATTTTCATCTTGGAGAAGAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCACCTCAACTCGTTTTCATTTGGATTTTCATCTTGGAGAAGAGCT  629

seq1  AGTGGGACCAGCGGGAGCAGGTGGACTGTGTTGATGCAAAGGTGGCTCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACCAGCGGGAGCAGGTGGACTGTGTTGATGCAAAGGTGGCTCGT  679

seq1  GTTTCAGCCCCTGGGGATTGAGGTTAAAGGCTTTGAAAACCGGCTAGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCCCCTGGGGATTGAGGTTAAAGGCTTTGAAAACCGGCTAGGGT  729

seq1  AGCTTTGGATATCTGTCTCCTCCTAGTCAAAAGCGGTTCCACTTTCAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGATATCTGTCTCCTCCTAGTCAAAAGCGGTTCCACTTTCAGTT  779

seq1  GTGAAGGAGGAGGGAAAAAAAAGCCAAACCAGGAAGTGAAGTCCCCAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGAGGAGGGAAAAAAAAGCCAAACCAGGAAGTGAAGTCCCCAGCA  829

seq1  CCAGCATGTCAGAAAGCCCGGCTATGGCCTGGCTGGGACAGATCAGGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTCAGAAAGCCCGGCTATGGCCTGGCTGGGACAGATCAGGGCA  879

seq1  GGGCAGAAGTGGGGCCACTAGCCAGGCTGCCTGCCTGCCTGCCTGCATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAGTGGGGCCACTAGCCAGGCTGCCTGCCTGCCTGCCTGCATGG  929

seq1  ACGCTCTGAAGTCACCCTGCCCGCGGAGAAGCCCGGGGTGAGGAAGGGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCTGAAGTCACCCTGCCCGCGGAGAAGCCCGGGGTGAGGAAGGGAG  979

seq1  GACCGAGGCTCTCCTGCCAGCAAGAAGCCGGAGCCAGAAAGCCTCACTCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAGGCTCTCCTGCCAGCAAGAAGCCGGAGCCAGAAAGCCTCACTCG  1029

seq1  GAAGCTCCAAGGCGTGCGTGCGGCCCTTCCCAGGGTAAGGGATCTGGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCAAGGCGTGCGTGCGGCCCTTCCCAGGGTAAGGGATCTGGAGC  1079

seq1  CGGGTGTGATCCTAGGACGGGGCTCCTGCACGCGTGACAGAGGCATCCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGTGATCCTAGGACGGGGCTCCTGCACGCGTGACAGAGGCATCCCA  1129

seq1  AATCCCTCCTCCCTGCCCACTTCAGGAAGCTGCTTGGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCCTCCCTGCCCACTTCAGGAAGCTGCTTGGAATTC  1171

seq1: chr19_55168510_55169667
seq2: B6Ng01-156G09.g_67_1208

seq1  GAATTCACAGCTGATGCGATGGTCAAGAATTCCACTAACGTCTCTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTGATGCGATGGTCAAGAATTCCACTAACGTCTCTAGAAG  50

seq1  ACGTTTAAAATCCGAGCAGAAGAGTTAGGGGTTACTGCTTAAAAACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAAAATCCGAGCAGAAGAGTTAGGGGTTACTGCTTAAAAACTTAC  100

seq1  AGAATGAAGAAAATACATGTTTTATTGAGCAGTACTTCTTATACTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGAAAATACATGTTTTATTGAGCAGTACTTCTTATACTTCAAA  150

seq1  GATAGTCACAAACTCAAGTTTAACTTTGAAACCCTAAAACCAAAGGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCACAAACTCAAGTTTAACTTTGAAACCCTAAAACCAAAGGCAAT  200

seq1  GGTATTTCTTCCTTCCCACACCACGGTGCCCTCCATCCCTAGAGAGCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTCCTTCCCACACCACGGTGCCCTCCATCCCTAGAGAGCGGG  250

seq1  GACCCACAATCAGCTTCCATCACAGAAGTCACAGCTTTCAGAGTTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAATCAGCTTCCATCACAGAAGTCACAGCTTTCAGAGTTCCCCA  300

seq1  AATACAAACTATCATCCTAAATACCACAGTTACTCGCGGGCCCCTGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAACTATCATCCTAAATACCACAGTTACTCGCGGGCCCCTGGCCC  350

seq1  ACAAGACACACGAGAATTATTACCATTGAATGAGTGAGAAAACTGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACACGAGAATTATTACCATTGAATGAGTGAGAAAACTGAGGCT  400

seq1  GCCAAAACTTGAGTCAATCTCAGAGCTCTCTATTCCCTAAAATGACTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAACTTGAGTCAATCTCAGAGCTCTCTATTCCCTAAAATGACTGGC  450

seq1  CAGTTAATACCAAAAAGTACAGCTACCAGTCACTTTACAGGTGATCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATACCAAAAAGTACAGCTACCAGTCACTTTACAGGTGATCCTTA  500

seq1  TCAATGTGAGCAAGATCAAAAAAATCCAAAAATAAAAAGTGCCAACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGAGCAAGATCAAAAAAATCCAAAAATAAAAAGTGCCAACAAGA  550

seq1  TATAAAAATCACTTAATCTCTTTACAGAAAACTGGAGTTTCAAAAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATCACTTAATCTCTTTACAGAAAACTGGAGTTTCAAAAAACAG  600

seq1  AGGCAGATCCCAAGAAGTATAAAAACATTTACTAACAAATTGTCTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCCCAAGAAGTATAAAAACATTTACTAACAAATTGTCTTAAAT  650

seq1  GCATGGAGGAACTGCAAGAAGAAAGTAGTTTCATCCTCTATCCCTGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGGAACTGCAAGAAGAAAGTAGTTTCATCCTCTATCCCTGCTGC  700

seq1  ACAGAAAGCAGCAGCCTGTTACACTATAGCCATCCAACCCCAGGCCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCAGCAGCCTGTTACACTATAGCCATCCAACCCCAGGCCATAG  750

seq1  CCACCACTCCACAACAGCCTGTTACACTATAGCCATCCAACCCCAGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTCCACAACAGCCTGTTACACTATAGCCATCCAACCCCAGGCCA  800

seq1  CAGCCACCACTCCACAACAGCCTG-TTACACTATAGCCGTCCAACCCCAG  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGCCACCACTCCACAACAGCCTGTTTACACTATAGCCGTCCAACCCCAG  850

seq1  GCCACAGCCACCACTCCACAACAGCCTGTTACACTATAGCCATCCAACCC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCACCACTTCACAACAGCCTGTTACACTATAGCCATCCAACCC  900

seq1  CAGGCCATAGCCACCACTCCACAACAGCCTGTTACACTATAGCCATCCAA  949
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATAGC--ACACTCCACAACAGCCTGTTACACTATAGCCATCCAA  948

seq1  CCCCAGGCCACAGCCACCACTCCACAACAGCCTGTTACACT-ATAGCCAT  998
      ||||||||||||| ||||||| ||||||||||||||||||| ||||||||
seq2  CCCCAGGCCACAG-CACCACT-CACAACAGCCTGTTACACTAATAGCCAT  996

seq1  CCAACCCCAGGCCACAGCCACCACTCCACAACAGCCTGTTACACTATAGC  1048
      ||||||||||||||||| ||||||||||| |||| ||||||| |||||| 
seq2  CCAACCCCAGGCCACAG-CACCACTCCAC-ACAG-CTGTTAC-CTATAG-  1041

seq1  CATCCAACCCCAGGCCATAGCCACCACTCCACAACAGCCTGTTACACTAT  1098
      ||||  ||||   | ||||| |||||||||| ||||||   ||||  |||
seq2  CATC--ACCC--AGTCATAG-CACCACTCCAAAACAGCTGTTTACCTTAT  1086

seq1  AGCCATCCAACCCCAGGCCACAGTCACCACTTGACAGTAATTCCCTGTG-  1147
      |||||||  | |||||| ||||||||||  | |||||| ||| |||||| 
seq2  AGCCATC--AACCCAGG-CACAGTCACCCTTGGACAGTTATT-CCTGTGC  1132

seq1  CAGCTCTAGTT  1158
      ||||| |||||
seq2  CAGCT-TAGTT  1142