BAC Information

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BAC

Clone NameB6Ng01-158J10
Chromosome19 (Build37)
Map Location 28,368,370 - 28,514,157
singlet/doubletdoublet
Overlap geneGlis3
Upstream geneKcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneEG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J10.bB6Ng01-158J10.g
ACCDH952496DH952497
length1,0761,110
definitionDH952496|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J10, 5' end.DH952497|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,368,370 - 28,369,449)(28,513,040 - 28,514,157)
sequence
gaattcatagctggagtcaactctcctctaatataatagacaagcaaggg
tgagtagtgcttctgcgccccagacctttgttactctctctaacacagag
ataattttcaatttctttgacacctggggactcttcaaagtcctgaaaag
ccataactatgtagcatacactctcggagtggcaaagaacgaaatgatcc
tttcaagttgttctagaaagcaaaataacatcaatgccacagtcttgagt
ctaagagctttaaaggacagcctttgtgtgaggaccaaatgaaacacttt
cctgttccttgtcatttcttctggaagatattcaccattctctgcagggg
gagatcaggcacatttaggatgaatgctacagtcatcatggtttcctatt
ggccaaataataaacgctcattcacaggaggctcaaactccttagtgtgg
ctaatgccaggcaactttcagtaacatgccccgccacagtcatggtcatt
actattcctcttgatatttgcacctatagaccattgactttcaggggaga
cagtgcttcctctattgcttccaccccattttgagaatagatgctcttgc
tctgagcctccaaagccactgtactaccctttctttagtcttgtcttgtc
atttatcatgccctatttgcttggctgtcctccatggtatattcaatgtc
caccacatcttatgcttcattattaccagcccagtgatagactcaatgaa
cccgagagtccccagggcgagaatagatcctgataagcttcaacatcttg
gtacattcttatgagttctgaacacacactgggacattcaaaagacagag
gctatgaagaagctgtgtagatacctgtttgctcaggagcaggactagga
aagcagcagcccagctgagaggtactctgaaggtacatatgcagagaata
atggtaccaggccataagaagttctttcacctcttagcaatgcgttgtgt
gcctacatgtgtggtggactagatttaggaattgcatccagtatgcagag
gtctagatggcagaaacattttaaat
gaattctcagccattaaaaaaaaattgactttagaaagctgtgctggaga
gtccaatctctccatgggtatgtcaaaacaaaagtcagaaacagatgagc
ccaccttcccccaaatatccaaagcttcaagaaagtcacagcaaatgaaa
atgaggcaagagaacgtggctgactagagaaaagccattaactaaatcaa
ttaagaaataaataccatccggggagaatttctccctagtctgtaagatc
agtgggcctagccatgccacagactcactaggcaagcagaatgttggggc
ttggggggtctctccatttttggacgaatttttgtctaaacttttcgtaa
aaggtctgcttttctgttcatgcatcagttagggtcatggcacggcatgt
ttccaaaggcctttcccgtgagaccaaagacaccgatatgctcactggat
gccatgtttttgccaccaagataaaccacactcttggttttgctttctgg
actattgtttcagttttcatttgttatttatctatgagcacctaggggtc
agagacttcgtcctttttgactcctttatttgcctggggcttggctgagt
actctcaaataaccagatcctgtagcagcaatcatcagcagtggccttct
tccttcgctctggtctgaagacatttttctttacacttgtggtgtggtac
tttatgtatttgacatatacaacactcacagacacacacacacacacaca
cacacacacacacacagagagagaaagagaaagagagagaatatcttgct
tttataatgtaagatttgtatgaactttttcaaggttcagacttctctgg
gtgtagggaaagtgcaagaaagaatgagctagcttaggcagtcttttttc
tttcagtacactcacccctctggagaatacgttgccctgctttaaactgc
agggttttttagaatcatacattccatcttgtacatatcaagtgatattt
tacttctctcagaaaaagttactaatggccaaattttagtagtttcatca
gctattgttctttagtcaagttgatctggaaataggagccactgcgaatt
tgaacatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28368370_28369449
seq2: B6Ng01-158J10.b_46_1121

seq1  GAATTCATAGCTGGAGTCAACTCTCCTCTAATATAATAGACAAGCAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCTGGAGTCAACTCTCCTCTAATATAATAGACAAGCAAGGG  50

seq1  TGAGTAGTGCTTCTGCGCCCCAGACCTTTGTTACTCTCTCTAACACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTGCTTCTGCGCCCCAGACCTTTGTTACTCTCTCTAACACAGAG  100

seq1  ATAATTTTCAATTTCTTTGACACCTGGGGACTCTTCAAAGTCCTGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTCAATTTCTTTGACACCTGGGGACTCTTCAAAGTCCTGAAAAG  150

seq1  CCATAACTATGTAGCATACACTCTCGGAGTGGCAAAGAACGAAATGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTATGTAGCATACACTCTCGGAGTGGCAAAGAACGAAATGATCC  200

seq1  TTTCAAGTTGTTCTAGAAAGCAAAATAACATCAATGCCACAGTCTTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTGTTCTAGAAAGCAAAATAACATCAATGCCACAGTCTTGAGT  250

seq1  CTAAGAGCTTTAAAGGACAGCCTTTGTGTGAGGACCAAATGAAACACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCTTTAAAGGACAGCCTTTGTGTGAGGACCAAATGAAACACTTT  300

seq1  CCTGTTCCTTGTCATTTCTTCTGGAAGATATTCACCATTCTCTGCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTTGTCATTTCTTCTGGAAGATATTCACCATTCTCTGCAGGGG  350

seq1  GAGATCAGGCACATTTAGGATGAATGCTACAGTCATCATGGTTTCCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGGCACATTTAGGATGAATGCTACAGTCATCATGGTTTCCTATT  400

seq1  GGCCAAATAATAAACGCTCATTCACAGGAGGCTCAAACTCCTTAGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATAATAAACGCTCATTCACAGGAGGCTCAAACTCCTTAGTGTGG  450

seq1  CTAATGCCAGGCAACTTTCAGTAACATGCCCCGCCACAGTCATGGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCCAGGCAACTTTCAGTAACATGCCCCGCCACAGTCATGGTCATT  500

seq1  ACTATTCCTCTTGATATTTGCACCTATAGACCATTGACTTTCAGGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCTCTTGATATTTGCACCTATAGACCATTGACTTTCAGGGGAGA  550

seq1  CAGTGCTTCCTCTATTGCTTCCACCCCATTTTGAGAATAGATGCTCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTCCTCTATTGCTTCCACCCCATTTTGAGAATAGATGCTCTTGC  600

seq1  TCTGAGCCTCCAAAGCCACTGTACTACCCTTTCTTTAGTCTTGTCTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTCCAAAGCCACTGTACTACCCTTTCTTTAGTCTTGTCTTGTC  650

seq1  ATTTATCATGCCCTATTTGCTTGGCTGTCCTCCATGGTATATTCAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATGCCCTATTTGCTTGGCTGTCCTCCATGGTATATTCAATGTC  700

seq1  CACCACATCTTATGCTTCATTATTACCAGCCCAGTGATAGACTCAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATCTTATGCTTCATTATTACCAGCCCAGTGATAGACTCAATGAA  750

seq1  CCCGAGAGTCCCCAGGGCGAGAATAGATCCTGATAAGCTTCAACATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGAGTCCCCAGGGCGAGAATAGATCCTGATAAGCTTCAACATCTTG  800

seq1  GTACATTCTTATGAGTTCTGAACACACACTGGGACATTCAGAAGACAGAG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTACATTCTTATGAGTTCTGAACACACACTGGGACATTCAAAAGACAGAG  850

seq1  GCTATGAAGAAGCTGTGTAGATACCTGTTTGCTCAGGAGCAGGACTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAAGAAGCTGTGTAGATACCTGTTTGCTCAGGAGCAGGACTAGGA  900

seq1  AAGCAGCAGGCCCAGCTGAGAGGTACTCTGAAGGTACATATGCAAGAG-A  949
      |||||||| |||||||||||||||||||||||||||||||||| |||| |
seq2  AAGCAGCA-GCCCAGCTGAGAGGTACTCTGAAGGTACATATGC-AGAGAA  948

seq1  TAATGGTACCAGGCCATAAGAAAGTCCTTCACCTCTTAGCAATGCG-TGT  998
      ||||||||||||||||||||||  || ||||||||||||||||||| |||
seq2  TAATGGTACCAGGCCATAAGAAGTTCTTTCACCTCTTAGCAATGCGTTGT  998

seq1  GTGCCTACATGTGTGGTGGACTAGAACCTAGGAATTGCATCCAAGTATGC  1048
      |||||||||||||||||||||||| |  |||||||||||||| |||||||
seq2  GTGCCTACATGTGTGGTGGACTAG-ATTTAGGAATTGCATCC-AGTATGC  1046

seq1  AGGAGGTCTAAGATGGCAGAAACATTTAAAAT  1080
      | ||||||| ||||||||||||||||| ||||
seq2  A-GAGGTCT-AGATGGCAGAAACATTTTAAAT  1076

seq1: chr19_28513040_28514157
seq2: B6Ng01-158J10.g_67_1176 (reverse)

seq1  TTCATGTTTCAAATTTCTGCAGTGGCTCCTATTTTCCAGATCAAACTCTG  50
      |||||| ||||||||   ||||||||||||| |||||||||| |||| ||
seq2  TTCATG-TTCAAATT--CGCAGTGGCTCCTA-TTTCCAGATC-AACT-TG  44

seq1  ACTTAAGGACACATTAGATTGATGAAACTACTAAAATTTTGCCATTAGTA  100
      ||| |||   ||| |||  |||||||||||||||||||| ||||||||||
seq2  ACTAAAG--AACAATAG-CTGATGAAACTACTAAAATTTGGCCATTAGTA  91

seq1  ACTATTTCTGAGAGTAGTAAAATATCACTTTGTATGTACAAGGTGGAATG  150
      ||| |||||||||| |||||||||||||||  |||||||||| |||||||
seq2  ACTTTTTCTGAGAGAAGTAAAATATCACTTGATATGTACAAGATGGAATG  141

seq1  TATGATTCTAAAAAAACCCTGCAGTTGTAAAGCAGG--CACGTATTCTCC  198
      ||||||||| |||||||||||||||| |||||||||   |||||||||||
seq2  TATGATTCT-AAAAAACCCTGCAGTT-TAAAGCAGGGCAACGTATTCTCC  189

seq1  AGA-GGGTGAGTGTACTG-AAGGAAGAAGGCTGCCTAAGCTAGCTCATTC  246
      ||| |||||||||||||| ||| || ||| ||||||||||||||||||||
seq2  AGAGGGGTGAGTGTACTGAAAGAAAAAAGACTGCCTAAGCTAGCTCATTC  239

seq1  TTTCTTGCACTTTCCCTACACCCAGAGAAGTCTGAACCTTTGAAAAGGTT  296
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TTTCTTGCACTTTCCCTACACCCAGAGAAGTCTGAACC-TTGAAAAAGTT  288

seq1  CATTACAAATCTTACATTATAAAAGCAAGATATTCTCTCTCTTTCTCTTT  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TACAAATCTTACATTATAAAAGCAAGATATTCTCTCTCTTTCTCTTT  337

seq1  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAGT  387

seq1  GTTGTATATGTCAAATACATAAAGTACCACACCACAAGTGTAAAG-AAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTGTATATGTCAAATACATAAAGTACCACACCACAAGTGTAAAGAAAAA  437

seq1  TGTCTTCAGACCAGAGCGAAGGAAGAAGGCCACTGCTGATGATTGCTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACCAGAGCGAAGGAAGAAGGCCACTGCTGATGATTGCTGCT  487

seq1  ACAGGATCTGGTTATTTGAGAGTACTCAGCCAAGCCCCAGGCAAATAAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTGGTTATTTGAGAGTACTCAGCCAAGCCCCAGGCAAATAAAG  537

seq1  GAGTCAAAAAGGACGAAGTCTCTGACCCCTAGGTGCTCATAGATAAATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAAAGGACGAAGTCTCTGACCCCTAGGTGCTCATAGATAAATAA  587

seq1  CAAATGAAAACTGAAACAATAGTCCAGAAAGCAAAACCAAGAGTGTGGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAACTGAAACAATAGTCCAGAAAGCAAAACCAAGAGTGTGGTT  637

seq1  TATCTTGGTGGCAAAAACATGGCATCCAGTGAGCATATCGGTGTCTTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGTGGCAAAAACATGGCATCCAGTGAGCATATCGGTGTCTTTGG  687

seq1  TCTCACGGGAAAGGCCTTTGGAAACATGCCGTGCCATGACCCTAACTGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGGGAAAGGCCTTTGGAAACATGCCGTGCCATGACCCTAACTGAT  737

seq1  GCATGAACAGAAAAGCAGACCTTTTACGAAAAGTTTAGACAAAAATTCGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACAGAAAAGCAGACCTTTTACGAAAAGTTTAGACAAAAATTCGT  787

seq1  CCAAAAATGGAGAGACCCCCCAAGCCCCAACATTCTGCTTGCCTAGTGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATGGAGAGACCCCCCAAGCCCCAACATTCTGCTTGCCTAGTGAG  837

seq1  TCTGTGGCATGGCTAGGCCCACTGATCTTACAGACTAGGGAGAAATTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCATGGCTAGGCCCACTGATCTTACAGACTAGGGAGAAATTCTC  887

seq1  CCCGGATGGTATTTATTTCTTAATTGATTTAGTTAATGGCTTTTCTCTAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATGGTATTTATTTCTTAATTGATTTAGTTAATGGCTTTTCTCTAG  937

seq1  TCAGCCACGTTCTCTTGCCTCATTTTCATTTGCTGTGACTTTCTTGAAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACGTTCTCTTGCCTCATTTTCATTTGCTGTGACTTTCTTGAAGC  987

seq1  TTTGGATATTTGGGGGAAGGTGGGCTCATCTGTTTCTGACTTTTGTTTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATTTGGGGGAAGGTGGGCTCATCTGTTTCTGACTTTTGTTTTG  1037

seq1  ACATACCCATGGAGAGATTGGACTCTCCAGCACAGCTTTCTAAAGTCAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCATGGAGAGATTGGACTCTCCAGCACAGCTTTCTAAAGTCAAT  1087

seq1  TTTTTTTTAATGGCTGAGAATTC  1118
      |||||||||||||||||||||||
seq2  TTTTTTTTAATGGCTGAGAATTC  1110