BAC Information

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BAC

Clone NameB6Ng01-159L02
Chromosome19 (Build37)
Map Location 48,363,629 - 48,500,881
singlet/doubletdoublet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159L02.bB6Ng01-159L02.g
ACCDH953281DH953282
length1,1781,101
definitionDH953281|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L02, 5' end.DH953282|Mus musculus domesticus DNA, BAC clone: B6Ng01-159L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,499,696 - 48,500,881)(48,363,629 - 48,364,727)
sequence
gaattccaggcagctagaatgagagtcttatgcacacccccacagtgaaa
cacctaacctctaacaaggttacatccctaataatgctactccctgggcc
aagcatatacaaaccatcatagacagacagacagacagacagaatcatta
catgcagtagcatatatggaagtctgatggtaactttgagtctattctct
ccttctacctttatgtaggatatgaggttaaaatttaggtcttgaggatt
gtattaggtcagacagcaggtgccttcacctactgagacatctctacagc
cctaaacaacagtttttaacaaaaataagccaagtggtggcaatggaagc
acttaatccctgcactccgaaagaagaggcaggcaggcagatctctgagt
tcaaggccattctggtctacagagtaagttccagaacaatgagagctcat
cagagaaatcctgtgtcaaggaagaagaggaaaaagaagaggaggaggag
gaggaagaggaggaagacactgatgataacaaagctatgtgaatttcatg
aaggcctgacaaagattatggcacaagtcagaactcaataaatatttgtg
gaataaattcaagtattcataaatgagtgactttatatccattgccacat
acataagaaagttcagtgtctctttttctaatggacatggatttgacagg
aagtacagtagcagtgtttataaacaagaatggagatgtaattattaatt
aaagtgtgtaatttttacatttttatctatgtgataacacatcaaaaata
tgcatcctcacacttccctgctagcacccatgtattaattttctgagaaa
atatgggtgatgatattgtggcaatcgggggcattttctagaactctttc
ttcatatggggagggaaaatacaaaaaccctaatacttatgattccttcc
ctatttataactctgtatggtgacattaccattatctcatgtgaagaatg
agaaaaccagaacacagtgacatagactcctaacacagcaaacagaagaa
gtccagttgagagcatgcaggtagtaacacctagcaggaaatcacacctt
gcatctcttactctgtgcaagtccctcattcagacatggaacctagccac
ttcttgtttgaatgtttatttaatttac
gaattctcttcgtgggtatttgcataataactgatggaatgaataacgtt
ggggctattgcattctgtaggctaatgatggcataatataagcattgccc
tgtgacagagctagaactgggcttcaaacctagcactttaaaatgaaata
aaacctagttggttcacaggagagagaagaacagggagagagggagactg
agtgcggcactgtgaggttaagaattgagtattcgaattgaccctggatg
agaaaagctcagggccaaggagagccaacagcagccacatccagtcacta
gctaaccctttctgtagggtagatcacctgtgctctccagggcttttagt
gtctagtttatggaatatttcaggatagagcctggggtttcttttcttac
ctagttcttttaagttgtgtcttaggttaacagaaccagatccctagcca
gacctgtaccacaggctggcaccaccttcatttgtagggctggggttcct
gcgaccctggggttctgactggtaatcgaaagggcaaaagttctgaaagg
tcttttgtgccccagagagaggacttgggttctttatccaaaccctcctc
tatcagaaaatcagtataaaaagaagtctgtcgccactgcccttgcttcc
tcctatctttctagggttttcttttttgtgatggtttctctttttccagt
tctttacctctcttgctgcccagtgatctagcattttctcctgacacttt
gcttggcacatccaagggaccctttcttccttgaagtttgctgcctttgc
ttatgagcatctgctgcctaagtggtcataaataaatcccccgaagcagt
gacattttagaggtctgagagtgacactgtcccctgggcttgtggatggc
tccctgtccattgaaagcaacttttgcaggaaattaagccttggcagtct
gtggaagttagggcaaataactttatgcacgtatgaattaagttacatgt
agtagtgtattggccatttgtctgtaaatttttaaatagcattttggccc
attatattctgtgaaagtttcaacccaaagaacaatgtagccaggcatct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48499696_48500881
seq2: B6Ng01-159L02.b_41_1218 (reverse)

seq1  GTAAATAAATAAAACAATTTTAAAACAAAGAAAGTGTGCTAGGTTCAATG  50
      |||||| ||  |||||   || ||||||   ||||| ||||||||| |||
seq2  GTAAATTAAATAAACA---TTCAAACAA--GAAGTG-GCTAGGTTCCATG  44

seq1  TCTGAAATGA-GGACTTGGCAGGAGTAAGAGGATGCATGTTGGTGTG-TC  98
      |||| ||||| |||||||    |||||||| ||||||    |||||| | 
seq2  TCTG-AATGAGGGACTTGCACAGAGTAAGA-GATGCA---AGGTGTGATT  89

seq1  TCCTGCTTGGTGTTTACTACCTGCATGCTCTCAACTGG-CTTCTTCTGTT  147
      ||||||| |||| ||||||||||||||||||||||||| |||||||||||
seq2  TCCTGCTAGGTG-TTACTACCTGCATGCTCTCAACTGGACTTCTTCTGTT  138

seq1  TGCTGTGTTAGGGAGTCTATGTCACTGTGTTCTGGTTTTCTCA-TCTTCA  196
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TGCTGTGTTA-GGAGTCTATGTCACTGTGTTCTGGTTTTCTCATTCTTCA  187

seq1  CAATGAGAATAATGGTAATGTCAACCATACAGAGTTATAAATAGGGAAGG  246
      | ||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  C-ATGAG-ATAATGGTAATGTC-ACCATACAGAGTTATAAATAGGGAAGG  234

seq1  AATCATAAGTATTA-GGTTTTTGTATTATTCCCT-CCCATATGA--GAAG  292
      |||||||||||||| |||||||||||| |||||| |||||||||   |||
seq2  AATCATAAGTATTAGGGTTTTTGTATT-TTCCCTCCCCATATGAAGAAAG  283

seq1  GGTTCTAG-AAATGCCCCCGATTGCCACAATATCATCACCCATATTTTCT  341
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGAAAATGCCCCCGATTGCCACAATATCATCACCCATATTTTCT  333

seq1  CAGAAAATTAATACATGGGTGCTAGCAGGGAAGTGTGAGGATGCATATTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTAATACATGGGTGCTAGCAGGGAAGTGTGAGGATGCATATTT  383

seq1  TTGATGTGTTATCACATAGATAAAAATGTAAAAATTACACACTTTAATTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTTATCACATAGATAAAAATGTAAAAATTACACACTTTAATTA  433

seq1  ATAATTACATCTCCATTCTTGTTTATAAACACTGCTACTGTACTTCCTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACATCTCCATTCTTGTTTATAAACACTGCTACTGTACTTCCTGT  483

seq1  CAAATCCATGTCCATTAGAAAAAGAGACACTGAACTTTCTTATGTATGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATGTCCATTAGAAAAAGAGACACTGAACTTTCTTATGTATGTG  533

seq1  GCAATGGATATAAAGTCACTCATTTATGAATACTTGAATTTATTCCACAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGATATAAAGTCACTCATTTATGAATACTTGAATTTATTCCACAA  583

seq1  ATATTTATTGAGTTCTGACTTGTGCCATAATCTTTGTCAGGCCTTCATGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTGAGTTCTGACTTGTGCCATAATCTTTGTCAGGCCTTCATGA  633

seq1  AATTCACATAGCTTTGTTATCATCAGTGTCTTCCTCCTCTTCCTCCTCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATAGCTTTGTTATCATCAGTGTCTTCCTCCTCTTCCTCCTCCT  683

seq1  CCTCCTCTTCTTTTTCCTCTTCTTCCTTGACACAGGATTTCTCTGATGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTTCTTTTTCCTCTTCTTCCTTGACACAGGATTTCTCTGATGAG  733

seq1  CTCTCATTGTTCTGGAACTTACTCTGTAGACCAGAATGGCCTTGAACTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTGTTCTGGAACTTACTCTGTAGACCAGAATGGCCTTGAACTCA  783

seq1  GAGATCTGCCTGCCTGCCTCTTCTTTCGGAGTGCAGGGATTAAGTGCTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCTGCCTGCCTCTTCTTTCGGAGTGCAGGGATTAAGTGCTTC  833

seq1  CATTGCCACCACTTGGCTTATTTTTGTTAAAAACTGTTGTTTAGGGCTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCACCACTTGGCTTATTTTTGTTAAAAACTGTTGTTTAGGGCTGT  883

seq1  AGAGATGTCTCAGTAGGTGAAGGCACCTGCTGTCTGACCTAATACAATCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTCTCAGTAGGTGAAGGCACCTGCTGTCTGACCTAATACAATCC  933

seq1  TCAAGACCTAAATTTTAACCTCATATCCTACATAAAGGTAGAAGGAGAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCTAAATTTTAACCTCATATCCTACATAAAGGTAGAAGGAGAGA  983

seq1  ATAGACTCAAAGTTACCATCAGACTTCCATATATGCTACTGCATGTAATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCAAAGTTACCATCAGACTTCCATATATGCTACTGCATGTAATG  1033

seq1  ATTCTGTCTGTCTGTCTGTCTGTCTATGATGGTTTGTATATGCTTGGCCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCTGTCTGTCTGTCTGTCTATGATGGTTTGTATATGCTTGGCCC  1083

seq1  AGGGAGTAGCATTATTAGGGATGTAACCTTGTTAGAGGTTAGGTGTTTCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAGCATTATTAGGGATGTAACCTTGTTAGAGGTTAGGTGTTTCA  1133

seq1  CTGTGGGGGTGTGCATAAGACTCTCATTCTAGCTGCCTGGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGGTGTGCATAAGACTCTCATTCTAGCTGCCTGGAATTC  1178

seq1: chr19_48363629_48364727
seq2: B6Ng01-159L02.g_66_1166

seq1  GAATTCTCTTCGTGGGTATTTGCATAATAACTGATGGAATGAATAACGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCGTGGGTATTTGCATAATAACTGATGGAATGAATAACGTT  50

seq1  GGGGCTATTGCATTCTGTAGGCTAATGATGGCATAATATAAGCATTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATTGCATTCTGTAGGCTAATGATGGCATAATATAAGCATTGCCC  100

seq1  TGTGACAGAGCTAGAACTGGGCTTCAAACCTAGCACTTTAAAATGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGAGCTAGAACTGGGCTTCAAACCTAGCACTTTAAAATGAAATA  150

seq1  AAACCTAGTTGGTTCACAGGAGAGAGAAGAACAGGGAGAGAGGGAGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTTGGTTCACAGGAGAGAGAAGAACAGGGAGAGAGGGAGACTG  200

seq1  AGTGCGGCACTGTGAGGTTAAGAATTGAGTATTCGAATTGACCCTGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGGCACTGTGAGGTTAAGAATTGAGTATTCGAATTGACCCTGGATG  250

seq1  AGAAAAGCTCAGGGCCAAGGAGAGCCAACAGCAGCCACATCCAGTCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTCAGGGCCAAGGAGAGCCAACAGCAGCCACATCCAGTCACTA  300

seq1  GCTAACCCTTTCTGTAGGGTAGATCACCTGTGCTCTCCAGGGCTTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCCTTTCTGTAGGGTAGATCACCTGTGCTCTCCAGGGCTTTTAGT  350

seq1  GTCTAGTTTATGGAATATTTCAGGATAGAGCCTGGGGTTTCTTTTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTTATGGAATATTTCAGGATAGAGCCTGGGGTTTCTTTTCTTAC  400

seq1  CTAGTTCTTTTAAGTTGTGTCTTAGGTTAACAGAACCAGATCCCTAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTTTAAGTTGTGTCTTAGGTTAACAGAACCAGATCCCTAGCCA  450

seq1  GACCTGTACCACAGGCTGGCACCACCTTCATTTGTAGGGCTGGGGTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTACCACAGGCTGGCACCACCTTCATTTGTAGGGCTGGGGTTCCT  500

seq1  GCGACCCTGGGGTTCTGACTGGTAATCGAAAGGGCAAAAGTTCTGAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCCTGGGGTTCTGACTGGTAATCGAAAGGGCAAAAGTTCTGAAAGG  550

seq1  TCTTTTGTGCCCCAGAGAGAGGACTTGGGTTCTTTATCCAAACCCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTGCCCCAGAGAGAGGACTTGGGTTCTTTATCCAAACCCTCCTC  600

seq1  TATCAGAAAATCAGTATAAAAAGAAGTCTGTCGCCACTGCCCTTGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAAATCAGTATAAAAAGAAGTCTGTCGCCACTGCCCTTGCTTCC  650

seq1  TCCTATC-TTCTAGGGTTTTCTTTTTTGTGATGGTTTCTCTTTTTCCAGT  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTTTCTAGGGTTTTCTTTTTTGTGATGGTTTCTCTTTTTCCAGT  700

seq1  TCTTTACCTCTC-TGCTGCCCAGTGATCTAGCATTTTCTCCTGACAC-TT  747
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  TCTTTACCTCTCTTGCTGCCCAGTGATCTAGCATTTTCTCCTGACACTTT  750

seq1  GCTTGGCACATCCAAGGGACCCTTTCTTCCTTGAAG-TTGCTGCCTTTGC  796
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTGGCACATCCAAGGGACCCTTTCTTCCTTGAAGTTTGCTGCCTTTGC  800

seq1  TTATGAGCATCTGCTGCCTAAGTGGTCATAAATAAAT-CCCCGAAGCAGT  845
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATGAGCATCTGCTGCCTAAGTGGTCATAAATAAATCCCCCGAAGCAGT  850

seq1  GACATTTAGGAGGTCTGAGAGTGACAACTGTCCCCTGGGCTTGTGGATGG  895
      |||||||  |||||||||||||||| ||||||||||||||||||||||||
seq2  GACATTTTAGAGGTCTGAGAGTGAC-ACTGTCCCCTGGGCTTGTGGATGG  899

seq1  CTACACTGTCCATTGAAAGCAACTTTGGCAGGAAAGTAAGGCCTGGGCAG  945
      || | ||||||||||||||||||||| |||||||| ||| |||| |||||
seq2  CT-CCCTGTCCATTGAAAGCAACTTTTGCAGGAAATTAA-GCCTTGGCAG  947

seq1  TCTGGTGGAAGTTAGGGCAAAGAACTTAAGGCACAGAATGAATTAAGTTA  995
      ||| ||||||||||||||||| ||||| | |||| | |||||||||||||
seq2  TCT-GTGGAAGTTAGGGCAAATAACTTTATGCAC-GTATGAATTAAGTTA  995

seq1  CCATGTAGGAAGGTAATGGCCA-TTGTCTGTAAA-TTTTAATTAGCATTT  1043
       ||||||| |  ||| |||||| ||||||||||| |||||| ||||||||
seq2  -CATGTAGTAGTGTATTGGCCATTTGTCTGTAAATTTTTAAATAGCATTT  1044

seq1  TG--CCATTATA-TCTGGGAAAGGGGTCAACACAAAGAACAATGTAGCCA  1090
      ||  |||||||| |||| |||| |  ||||| ||||||||||||||||||
seq2  TGGCCCATTATATTCTGTGAAA-GTTTCAACCCAAAGAACAATGTAGCCA  1093

seq1  GGGCATCTC  1099
       ||||||||
seq2  -GGCATCTC  1101