BAC Information

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BAC

Clone NameB6Ng01-161F20
Chromosome19 (Build37)
Map Location 53,814,947 - 53,974,519
singlet/doubletdoublet
Overlap geneRbm20, LOC100042979, Pdcd4
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3
Downstream gene2310002J21Rik, Shoc2, Adra2a, LOC100043004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F20.bB6Ng01-161F20.g
ACCDH954495DH954496
length1,064639
definitionDH954495|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F20, 5' end.DH954496|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,973,450 - 53,974,519)(53,814,947 - 53,815,582)
sequence
gaattcccctacttcaaacctttcatttgatgagtagagaattagatgca
cgggaatttagtgagttgtccaaaccctcataaccagttacgatcaaagc
caggataggaaagaaggtctcagtgcacgggccatgtaggaatcatatgg
acaggaagactggccgtctggaagccaggctgcactaggccctttctact
gctcagccctgagtttttcaaatggcagtcttaaagccccagaagtgatg
ggcaggatggagtcgggaggaagcgcctgactgacgttaaaagtgcttca
gagacggttccaagaacctgggcaagaagaccacggtgtgaccagaggca
cagcacggtaagcagatgcagtgtgtcagcacagtatatacccagaaggt
gcagtgtgtcagcacggtatatacccagaagggctgagcagctccgaagc
tttgacttccgcagttcggctctgaaagactttcgtggcatcttgtcttt
catacagcttgtttgccaaatcagtcctgctacataacaagttagaaacg
agctcaactcaggatgaggaaagccagaaaaaaacgtttccctggaaaat
aaaataaaattttgccacctctacacctacacttgctctgacttccgagc
ccacgcacagtccagcgcctctagcccttgcagtggtcagttggggaacc
ccatactttcctgtgcttactaccactggtgtcgggctcctcccactgca
tctctggaggctccatttgtgttcttttggagggttcttggccaggcttc
acatatctgagaattaaccctctcttctctccgttgtgtgtttgagaaca
tttagtcggccattatcctcctcttgcctcttcagacgccaaacaaggct
atagagcctcggagagaaatgggagattttttttttttcgtggcagtcaa
tgagagtaacgatggtgcagcgtcatgattcaaagtcaactctcctagga
aatgcagaggagctgtaagggtggtggggagctcagagaaaaggatggta
cccaaaggaattga
gaattcacagatcagatcacagccatatgtaactccagttccagggagcc
taatacctgcatctggcctccacaggtgctaggcatgtgcactgttgcag
acacagactctatgtgagtcccaggtgctgggactttgaaggagggcagg
tgacacagcagttagtctgctggttccatcgctgagggaccatgaagact
tttccataagaaaattgtctctcacagccagggctatacagagaaaccct
gtctcgaaaaacccaaaccaaaccaaaccaaaccaaaccaaaccaaacca
actaaccaaccaacaacaacaacaaaacccaagaaaattgtctctcaatg
tcaccttgggggaggtggtgaggcatacagatgatgtcatcctgggggta
aggcgtacagatgatgtcaccccaggggtggggaatgcagatggtgtcac
cctgggggtggggtatgcaaatggtgctcccatgggggtggggcatgcag
atgatgtcatcccagggggtgggggcatgcaggtgatgtcatgggagtgg
tggtggtggatacagatgctatcctgagggtggggggatacagatgatgt
caccctgggggatgggccatgcatattttccaagctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53973450_53974519
seq2: B6Ng01-161F20.b_49_1112 (reverse)

seq1  TCAATTCCTTTGGTGTACCATCCCTTTTCTCTTGAGCCTCCCCACCACCC  50
      ||||||||||||| ||||||| ||||||||| |||| |||||||||||||
seq2  TCAATTCCTTTGG-GTACCAT-CCTTTTCTC-TGAG-CTCCCCACCACCC  46

seq1  CTTTCCAGCTTTCTCTGCATTTCCTAGGAGAGTTGACTTTGAATCATGAC  100
        || |||| | ||||||||||||||||||||||||||||||||||||||
seq2  --TTACAGC-TCCTCTGCATTTCCTAGGAGAGTTGACTTTGAATCATGAC  93

seq1  GCTGCACCATTCGTTACTCTCATTGACTGCCACG-AAAAAAAAAAATCTC  149
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GCTGCACCA-TCGTTACTCTCATTGACTGCCACGAAAAAAAAAAAATCTC  142

seq1  CCATTTCTCTCCGAGGCTCCTATTAGCCTTGTTTGGCGTCTG-AGGGGCA  198
      |||||||||||||||||| ||| ||||||||||||||||||| || ||||
seq2  CCATTTCTCTCCGAGGCT-CTA-TAGCCTTGTTTGGCGTCTGAAGAGGCA  190

seq1  AGA-GAGGATAATGG-CGACTAAATGTTCTCAAACACACAACGGAGAGAA  246
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGATAATGGCCGACTAAATGTTCTCAAACACACAACGGAGAGAA  240

seq1  GAGAGGGTTAATTCTCAGATATGTGAAGCCTGGCCAAGAACCCTCCAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTTAATTCTCAGATATGTGAAGCCTGGCCAAGAACCCTCCAAAA  290

seq1  GAACACAAATGGAGCCTCCAGAGATGCAGTGGGAGGAGCCCGACACCAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAATGGAGCCTCCAGAGATGCAGTGGGAGGAGCCCGACACCAGT  340

seq1  GGTAGTAAGCACAGGAAAGTATGGGGTTCCCCAACTGACCACTGCAAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAAGCACAGGAAAGTATGGGGTTCCCCAACTGACCACTGCAAGGG  390

seq1  CTAGAGGCGCTGGACTGTGCGTGGGCTCGGAAGTCAGAGCAAGTGTAGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCGCTGGACTGTGCGTGGGCTCGGAAGTCAGAGCAAGTGTAGGT  440

seq1  GTAGAGGTGGCAAAATTTTATTTTATTTTCCAGGGAAACGTTTTTTTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTGGCAAAATTTTATTTTATTTTCCAGGGAAACGTTTTTTTCTG  490

seq1  GCTTTCCTCATCCTGAGTTGAGCTCGTTTCTAACTTGTTATGTAGCAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCATCCTGAGTTGAGCTCGTTTCTAACTTGTTATGTAGCAGGA  540

seq1  CTGATTTGGCAAACAAGCTGTATGAAAGACAAGATGCCACGAAAGTCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGGCAAACAAGCTGTATGAAAGACAAGATGCCACGAAAGTCTTT  590

seq1  CAGAGCCGAACTGCGGAAGTCAAAGCTTCGGAGCTGCTCAGCCCTTCTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCGAACTGCGGAAGTCAAAGCTTCGGAGCTGCTCAGCCCTTCTGG  640

seq1  GTATATACCGTGCTGACACACTGCACCTTCTGGGTATATACTGTGCTGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACCGTGCTGACACACTGCACCTTCTGGGTATATACTGTGCTGAC  690

seq1  ACACTGCATCTGCTTACCGTGCTGTGCCTCTGGTCACACCGTGGTCTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCATCTGCTTACCGTGCTGTGCCTCTGGTCACACCGTGGTCTTCT  740

seq1  TGCCCAGGTTCTTGGAACCGTCTCTGAAGCACTTTTAACGTCAGTCAGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGTTCTTGGAACCGTCTCTGAAGCACTTTTAACGTCAGTCAGGC  790

seq1  GCTTCCTCCCGACTCCATCCTGCCCATCACTTCTGGGGCTTTAAGACTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCCGACTCCATCCTGCCCATCACTTCTGGGGCTTTAAGACTGC  840

seq1  CATTTGAAAAACTCAGGGCTGAGCAGTAGAAAGGGCCTAGTGCAGCCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAAACTCAGGGCTGAGCAGTAGAAAGGGCCTAGTGCAGCCTGG  890

seq1  CTTCCAGACGGCCAGTCTTCCTGTCCATATGATTCCTACATGGCCCGTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACGGCCAGTCTTCCTGTCCATATGATTCCTACATGGCCCGTGC  940

seq1  ACTGAGACCTTCTTTCCTATCCTGGCTTTGATCGTAACTGGTTATGAGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACCTTCTTTCCTATCCTGGCTTTGATCGTAACTGGTTATGAGGG  990

seq1  TTTGGACAACTCACTAAATTCCCGTGCATCTAATTCTCTACTCATCAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAACTCACTAAATTCCCGTGCATCTAATTCTCTACTCATCAAAT  1040

seq1  GAAAGGTTTGAAGTAGGGGAATTC  1070
      ||||||||||||||||||||||||
seq2  GAAAGGTTTGAAGTAGGGGAATTC  1064

seq1: chr19_53814947_53815582
seq2: B6Ng01-161F20.g_68_706

seq1  GAATTCACAGATCAGATCACAGCCATATGTAACTCCAGTTCCAGGGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATCAGATCACAGCCATATGTAACTCCAGTTCCAGGGAGCC  50

seq1  TAATACCTGCATCTGGCCTCCACAGGTGCTAGGCATGTGCACTGTTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGCATCTGGCCTCCACAGGTGCTAGGCATGTGCACTGTTGCAG  100

seq1  ACACAGACTCTATGTGAGTCCCAGGTGCTGGGACTTTGAAGGAGGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTCTATGTGAGTCCCAGGTGCTGGGACTTTGAAGGAGGGCAGG  150

seq1  TGACACAGCAGTTAGTCTGCTGGTTCCATCGCTGAGGGACCATGAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGCAGTTAGTCTGCTGGTTCCATCGCTGAGGGACCATGAAGACT  200

seq1  TTTCCATAAGAAAATTGTCTCTCACAGCCAGGGCTATACAGAGAAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAAGAAAATTGTCTCTCACAGCCAGGGCTATACAGAGAAACCCT  250

seq1  GTCTCGAAAAACCCAAACCAAACCAAACCAAACCAAACCAAACCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAACCCAAACCAAACCAAACCAAACCAAACCAAACCAAACCA  300

seq1  ACTAACCAACCAACAACAACAACAAAACCCAAGAAAATTGTCTCTCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAACCAACAACAACAACAAAACCCAAGAAAATTGTCTCTCAATG  350

seq1  TCACCTTGGGGGAGGTGGTGAGGCATACAGATGATGTCATCCTGGGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGGGGGAGGTGGTGAGGCATACAGATGATGTCATCCTGGGGGTA  400

seq1  AGGCGTACAGATGATGTCACCCCAGGGGTGGGGAATGCAGATGGTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTACAGATGATGTCACCCCAGGGGTGGGGAATGCAGATGGTGTCAC  450

seq1  CCTGGGGGTGGGGTATGCAAATGGTGCTCCCATGGGGGTGGGGCATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGTGGGGTATGCAAATGGTGCTCCCATGGGGGTGGGGCATGCAG  500

seq1  ATGATGTCATCCCAGGGG--TGGGGCATGCAGGTGATGTCATGGGAGTGG  548
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  ATGATGTCATCCCAGGGGGTGGGGGCATGCAGGTGATGTCATGGGAGTGG  550

seq1  TGGTGGTGGATACAGATGCTATCCTGAGGGT-GGGGGATACAGATGATGT  597
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTGGTGGATACAGATGCTATCCTGAGGGTGGGGGGATACAGATGATGT  600

seq1  CACCCT-GGGGATGGGCCATGCAAATTTTCCAAGGCTCTT  636
      |||||| |||||||||||||||| ||||||||| ||||||
seq2  CACCCTGGGGGATGGGCCATGCATATTTTCCAA-GCTCTT  639