BAC Information

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BAC

Clone NameB6Ng01-161K14
Chromosome19 (Build37)
Map Location 36,872,647 - 37,019,401
singlet/doubletdoublet
Overlap geneTnks2, Fgfbp3, Btaf1
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c
Downstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161K14.bB6Ng01-161K14.g
ACCDH954715DH954716
length9621,123
definitionDH954715|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K14, 5' end.DH954716|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,872,647 - 36,873,595)(37,018,275 - 37,019,401)
sequence
gagaggtccgctggaattcaaagccagtctcagtcagattcccgagacaa
tgtcttaaaaagaagaaagtttatgcattatcttcaagttcgtgttttgc
tttatgctctgtgacatcagcttccagatgacaaaaactatgtatcaatt
tttcttttttttttttttctggttgtgttggaacatgattttaattcagc
attcatgagatggaggcagtagggtctgaagttcagactcatcttggcta
caaaatgaatttgaggctaacctgggatacaaagaagagtaggacaaaaa
acaaaaccaagaacccaacttggttttagaaatagtgtattgactggata
tcttcatgcaattctttgactgaaattagttcaaaatagctggacaacct
ggatagagagatatgtgcctttaatattcatatttgggatgcagatgcag
acatgtctttgagtttgaaaacagcctggtctacagagtgatttccaaga
cagccagaaatacatgctgagaccatgtgttacttccccaagcataccaa
agactgaggttgttgtgtatcaatttttctaacaagctcttcagattggg
caatcaaattacccaggagagggacaattagcccaaatgtagtctttggc
aatgggaggatgaaaatttccttcctgcttttcccagccaaaaatataca
gtgactttccacttgattgtgacctttctgttccctgctaaaaagggggg
tatagatttttaagaaatgtatatacatatggcatatgctcctccctttt
caggaattttttaaatgccattatttaagttaacattatctaaaactgac
agctgtgactttccaaactattttcctttgaataattctatacctggatg
cctaatataattggcaaaattttcacttccttcacagtgtgcctttttta
acctatgtctta
gaattctgacagtcagggctacacagagaaacaaaaacaaacaaaagatt
aaaaacaaaaaccagaaaaaccttaaaagctgtgggtataagagatgcct
atctttcctctcaaggaagaagaaggaacgggaacccacaatgaactcgg
ggtggtggctcatgcctataatcccagtagcggggagggagtcaacactg
tctgacccaaggctgctaaagctatgtagtgagtgagttctagtccagcg
agctcaattttagttttgagagcttctctcaaaaaataaaaaataaataa
atgaaattttaaaagagctagcagtaatgaaagattataacttgcaaaat
gaataacatggcttggttataactcaaggttaacttagaaacagtgggag
gcccaagcacaactagcacttgggagagaggcagaggcaggctataaggt
gaattataaattcccttcaacacatacaaatatgtactgtgtgattggta
ctataagggctgacagtattagacattatctagatgttctagccagtact
gcatagaaagaccttgtctaaataaatgaataataagctaatgaaagaaa
gaaaaggacaagaaatacaactacagtgtatagtgcaacaaaagtcttgg
gtcaaaaaattatggaactagcaaggtataggggtgcacaattatttgaa
tactcagagggctgaaacaggatggctgtgagttcaaaaccagctgggct
acataaaagaaagtacaaaggaaacaggcagatgagagcagagcatacca
atgtaactggggttagggtttaggaagactaatctgggcagtgtagaaat
ctttgtgagaactaaaccacattccttacaaaaacccatatagtggatga
tatagaggcaaacaaacatctaagcaaaccccgcaccagcgtggtattta
agcaaaacacatgggtattgtaagatacaccaagaatttgaatctgggct
gaagatggcctcagttgttaagaagcacctgacctgcctcttctgaaggt
ccgtctgaatttcaatccagcaacccaatcgtggctcacacaccgaatga
aatctggcgccctcctcggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36872647_36873595
seq2: B6Ng01-161K14.b_45_993

seq1  GAATTCAAAGCCAGTCTCAGTCAGATT-GTGAGACAATGTCTTAAAAAGA  49
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  GAATTCAAAGCCAGTCTCAGTCAGATTCCCGAGACAATGTCTTAAAAAGA  50

seq1  AGAAAGTTTATGCATTATCTTCAAGTTCGTGTTTTGCTTTATGCTCTGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTATGCATTATCTTCAAGTTCGTGTTTTGCTTTATGCTCTGTG  100

seq1  ACATCAGCTTCCAGATGACAAAAACTATGTATCAATTTTTCTTTTTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCTTCCAGATGACAAAAACTATGTATCAATTTTTCTTTTTTTTT  150

seq1  TTTTTCTGGTTGTGTTGGAACATGATTTTAATTCAGCATTCATGAGATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGTTGTGTTGGAACATGATTTTAATTCAGCATTCATGAGATGG  200

seq1  AGGCAGTAGGGTCTGAAGTTCAGACTCATCTTGGCTACAAAATGAATTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTAGGGTCTGAAGTTCAGACTCATCTTGGCTACAAAATGAATTTG  250

seq1  AGGCTAACCTGGGATACAAAGAAGAGTAGGACAAAAAACAAAACCAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAACCTGGGATACAAAGAAGAGTAGGACAAAAAACAAAACCAAGAA  300

seq1  CCCAACTTGGTTTTAGAAATAGTGTATTGACTGGATATCTTCATGCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGGTTTTAGAAATAGTGTATTGACTGGATATCTTCATGCAATT  350

seq1  CTTTGACTGAAATTAGTTCAAAATAGCTGGACAACCTGGATAGAGAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGAAATTAGTTCAAAATAGCTGGACAACCTGGATAGAGAGATA  400

seq1  TGTGCCTTTAATATTCATATTTGGGATGCAGATGCAGACATGTCTTTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTAATATTCATATTTGGGATGCAGATGCAGACATGTCTTTGAG  450

seq1  TTTGAAAACAGCCTGGTCTACAGAGTGATTTCCAAGACAGCCAGAAATAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACAGCCTGGTCTACAGAGTGATTTCCAAGACAGCCAGAAATAC  500

seq1  ATGCTGAGACCATGTGTTACTTCCCCAAGCATACCAAAGACTGAGGTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGACCATGTGTTACTTCCCCAAGCATACCAAAGACTGAGGTTGT  550

seq1  TGTGTATCAATTTTTCTAACAAGCTCTTCAGATTGGGCAATCAAATTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCAATTTTTCTAACAAGCTCTTCAGATTGGGCAATCAAATTACC  600

seq1  CAGGAGAGGGACAATTAGCCCAAATGTAGTCTTTGGCAATGGGAGGATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGGACAATTAGCCCAAATGTAGTCTTTGGCAATGGGAGGATGA  650

seq1  AAATTTCCTTCCTGCTTTTCCCAGCCAAAAATATACAGTGACTTTCCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTTCCTGCTTTTCCCAGCCAAAAATATACAGTGACTTTCCACT  700

seq1  TGATTGTGACCTTTCTGTT-CCTGCTAAAAAGGGGGGGTATAGATTTTTA  748
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TGATTGTGACCTTTCTGTTCCCTGCTAAAAA-GGGGGGTATAGATTTTTA  749

seq1  AAGAAAATGTATATACATATGGCATATGCT-CTCCCTTTTCAGGAATTTT  797
      |   |||||||||||||||||||||||||| |||||||||||||||||||
seq2  A--GAAATGTATATACATATGGCATATGCTCCTCCCTTTTCAGGAATTTT  797

seq1  TTAAATGCCATTATTTAAGTTAACATTATCTAAAACTGACAGCTGTGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCATTATTTAAGTTAACATTATCTAAAACTGACAGCTGTGACT  847

seq1  TTCCAAACTATTTTCCTTTGAATAATTCTATTACCT-GATGCTTAATATA  896
      |||||||||||||||||||||||||||||| ||||| ||||| |||||||
seq2  TTCCAAACTATTTTCCTTTGAATAATTCTA-TACCTGGATGCCTAATATA  896

seq1  ATTTGCCAAAATTTTCACTTCCTTCACAGTGTGCC-TTTTTAAACTATGT  945
      | ||| ||||||||||||||||||||||||||||| ||||||| ||||||
seq2  A-TTGGCAAAATTTTCACTTCCTTCACAGTGTGCCTTTTTTAACCTATGT  945

seq1  CTTA  949
      ||||
seq2  CTTA  949

seq1: chr19_37018275_37019401
seq2: B6Ng01-161K14.g_72_1194 (reverse)

seq1  TGCACCAGAAGAGGGCGTCAGATTTCATTACGGGTGTGTGAGCCACGATG  50
      |||||| || ||||||| |||||||||||   ||||||||||||||||| 
seq2  TGCACC-GAGGAGGGCGCCAGATTTCATT--CGGTGTGTGAGCCACGATT  47

seq1  TGGTTGCTGGGATTTGAACTCAGGACGACCTTCAGAAGA-GCA-GTCA-G  97
       ||||||| |||||  || ||||   ||||||||||||| ||| |||| |
seq2  GGGTTGCT-GGATTGAAATTCAGACGGACCTTCAGAAGAGGCAGGTCAGG  96

seq1  TGC-TCTTAACCACTGA-GCCATCTTTCCAGCCCAAGATTCAAAATCTT-  144
      ||| ||||||| ||||| ||||||||  |||||| ||||||||| |||| 
seq2  TGCTTCTTAACAACTGAGGCCATCTT--CAGCCC-AGATTCAAATTCTTG  143

seq1  GTGT-TCTTTCAATACCCATGGTGTTTTGCTTAATTACCACGCT-GTGCG  192
      |||| |||| |||||||||| ||||||||||||| ||||||||| |||||
seq2  GTGTATCTTACAATACCCAT-GTGTTTTGCTTAAATACCACGCTGGTGCG  192

seq1  TGTTTTGCTTAGATGTTTGTTTTGCCTCTATATCAT-CACTAT-TGGGTT  240
       | |||||||||||||||| |||||||||||||||| |||||| ||||||
seq2  GGGTTTGCTTAGATGTTTG-TTTGCCTCTATATCATCCACTATATGGGTT  241

seq1  TTTGTATGAATTGTGGTTTAGTTCTCTACAAGACTTTCTACAACTG-CCA  289
      |||||| | | ||||||||||||||| ||||   ||||||| |||| |||
seq2  TTTGTAAGGAATGTGGTTTAGTTCTC-ACAAAGATTTCTAC-ACTGCCCA  289

seq1  GATTAGTCTTCCTAATCCCTAACCCCAGTTACATTTGGTATGCTCTGCTC  339
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GATTAGTCTTCCTAAACCCTAACCCCAGTTACA-TTGGTATGCTCTGCTC  338

seq1  TCTTCTGCCTGTTTCCTTTGTACTTTCTTTTTATGTAGCCCAGGCTGGTT  389
      || |||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TCATCTGCCTGTTTCCTTTGTACTTTC-TTTTATGTAGCCCA-GCTGGTT  386

seq1  TTGAACTCACAGCCATCCTGTTTCAGCCCTCTGAGTATTCAAATAATTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCACAGCCATCCTGTTTCAGCCCTCTGAGTATTCAAATAATTGT  436

seq1  GCACCCCTATACCTTGCTAGTTCCATAATTTTTTTGACCCAAGACTTTTG  489
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCACCCCTATACCTTGCTAGTTCCATAA-TTTTTTGACCCAAGACTTTTG  485

seq1  TTGCACTATACACTGTAGTTGTATTTCTTGTCCTTTTCTTTCTTTCATTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTATACACTGTAGTTGTATTTCTTGTCCTTTTCTTTCTTTCATTA  535

seq1  GCTTATTATTCATTTATTTAGACAAGGTCTTTCTATGCAGTACTGGCTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTATTCATTTATTTAGACAAGGTCTTTCTATGCAGTACTGGCTAG  585

seq1  AACATCTAGATAATGTCTAATACTGTCAGCCCTTATAGTACCAATCACAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAGATAATGTCTAATACTGTCAGCCCTTATAGTACCAATCACAC  635

seq1  AGTACATATTTGTATGTGTTGAAGGGAATTTATAATTCACCTTATAGCCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATATTTGTATGTGTTGAAGGGAATTTATAATTCACCTTATAGCCT  685

seq1  GCCTCTGCCTCTCTCCCAAGTGCTAGTTGTGCTTGGGCCTCCCACTGTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCTCTCCCAAGTGCTAGTTGTGCTTGGGCCTCCCACTGTTT  735

seq1  CTAAGTTAACCTTGAGTTATAACCAAGCCATGTTATTCATTTTGCAAGTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTAACCTTGAGTTATAACCAAGCCATGTTATTCATTTTGCAAGTT  785

seq1  ATAATCTTTCATTACTGCTAGCTCTTTTAAAATTTCATTTATTTATTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTCATTACTGCTAGCTCTTTTAAAATTTCATTTATTTATTTTT  835

seq1  TATTTTTTGAGAGAAGCTCTCAAAACTAAAATTGAGCTCGCTGGACTAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAGAGAAGCTCTCAAAACTAAAATTGAGCTCGCTGGACTAGA  885

seq1  ACTCACTCACTACATAGCTTTAGCAGCCTTGGGTCAGACAGTGTTGACTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCACTACATAGCTTTAGCAGCCTTGGGTCAGACAGTGTTGACTC  935

seq1  CCTCCCCGCTACTGGGATTATAGGCATGAGCCACCACCCCGAGTTCATTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCGCTACTGGGATTATAGGCATGAGCCACCACCCCGAGTTCATTG  985

seq1  TGGGTTCCCGTTCCTTCTTCTTCCTTGAGAGGAAAGATAGGCATCTCTTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCCGTTCCTTCTTCTTCCTTGAGAGGAAAGATAGGCATCTCTTA  1035

seq1  TACCCACAGCTTTTAAGGTTTTTCTGGTTTTTGTTTTTAATCTTTTGTTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAGCTTTTAAGGTTTTTCTGGTTTTTGTTTTTAATCTTTTGTTT  1085

seq1  GTTTTTGTTTCTCTGTGTAGCCCTGACTGTCAGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTCTCTGTGTAGCCCTGACTGTCAGAATTC  1123