BAC Information

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BAC

Clone NameB6Ng01-161L09
Chromosome19 (Build37)
Map Location 19,769,470 - 19,917,878
singlet/doubletdoublet
Overlap genenone
Upstream gene2410127L17Rik, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161L09.bB6Ng01-161L09.g
ACCDH954749DH954750
length1,141569
definitionDH954749|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L09, 5' end.DH954750|Mus musculus domesticus DNA, BAC clone: B6Ng01-161L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,916,715 - 19,917,878)(19,769,470 - 19,770,038)
sequence
gaattcaaaatattaatgctgtattttagtgtgactaccatataatatct
aaccatttataatacagaatgtatcctttatttcactataagttctaggc
ttacattcatttgtgtattttgtctttttaaaatatttccaatatatagt
ttaaaataggctacagagtatttcatatctaaccttgaagcatagagatg
tgtttgtcttgcaaagtcaaggtattaagtatctaaattttgttaaaaat
acaattagaggacaatatgaccttgtgaatgagtgtagcaaattcaataa
agacccaggaagattctaattcatttcataactcgtccatatgtgcacaa
taatctttgagtggcatttggctaaattctggtgtataaaatttaccttt
tacatgtagaaagatgtataattccaatttatttgcaatgaattgttaaa
atactaagacactaggaatgggctcacaacccttagaatgacccaccagt
tttatttctggctttacattatttgagaaactcccacatgtatacaagga
gacctgcattataaaagtttgctaacaggatgcagtatttaataatgaac
aattaaattaatcatatttagtaatgatgagtttaaaacaaaattagtaa
ttatgggcatatgacagtaaaactatagtatgaacataagtataaacatt
tatacacgatctatatagttttgtaagaaatatattcaaaacaatccata
atgaaaatatgatacagtttgagttttaaaaatatggctataaagtttga
agataaatgtggtcacctaaaacaatagaaaaaaactctttatatgtatg
tgcattttttttatacatagtcataaagcaacacatttgtagaatacata
gttattcaatgtttaaaagtggatttgaattattaataaattgatggtat
aaatttgtttttagatagagaagggaattgactcatgttacttgatggtc
aacttgactatcacttgacagaacccaaagttaaataaaagtaacacaaa
gaggtttgagaagatattcaaggagcattgctgagatatggctatcctca
gtattgcatcaccaaaagtgagaggaatgagagtctgaaaa
gaattcttctgggcagagagaacctactctactgtcactatgtctttaat
ccagaaaagtagagtttggatgtgtagcttctagaactatgagaaaatat
tgtgctgttttaaaatacaaacttgtcataatttgttgtagtagccaggg
aagattaatataggagaaaaggctactaattttgaaatgctaatttacat
ttccctagatgtttgagtttttaccacattgtaggctacagtggtttaaa
cattctacactggtggaaatctttctaaactgaaatgtcacatagaagct
atgtgtgggaaacagcatggctgtcttaagtgctattagtacgttcatga
aaatatccccattaaaatcaactcaaggtacaaaatgatgtgagcatata
ttgcaaagataatgaatctgattatatcattcgccttattttatatggcg
agacatttgaataatctcttccctatttttatatttttatttctctctct
ctttctccctttctctctttctctctctctctctctctctctctctctct
ctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19916715_19917878
seq2: B6Ng01-161L09.b_45_1185 (reverse)

seq1  TTTTCAGACT-TCTTTCTATCTCTGCTTCCTTTTTGGTGTTGCAATTAAC  49
      |||||||||| || |||   |||    ||  |||||||| ||||||  ||
seq2  TTTTCAGACTCTCATTC---CTC----TCACTTTTGGTGATGCAAT--AC  41

seq1  CTTGAGGGATAGCCATATCCTTCAGACAATGCTTCCTGGAAAATATCCTC  99
        ||| |||||||||||||  |||| ||||||| | ||   |||||| ||
seq2  --TGA-GGATAGCCATATC--TCAG-CAATGCTCCTTG---AATATCTTC  82

seq1  TCAAACCCTTCCTTTGTGGTTCCTTTTATTTAACTTTGGGTTCTGTCAAG  149
      |||||||    |||||| ||| ||||||||||||||||||||||||||||
seq2  TCAAACC---TCTTTGT-GTTACTTTTATTTAACTTTGGGTTCTGTCAAG  128

seq1  TGAATAGTCAAGTTTGACCATCAAGTAACATGAGTTCAATTCCCTTCTCT  199
      || ||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TG-ATAGTCAAG-TTGACCATCAAGTAACATGAG-TCAATTCCCTTCTCT  175

seq1  ATCTAAAAACAAATTTATACCATCAATTTATTAATAATTCAAATCCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAACAAATTTATACCATCAATTTATTAATAATTCAAATCCACTT  225

seq1  TTAAACATTGAATAACTATGTATTCTACAAATGTGTTGC-TTATGACTAT  298
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTAAACATTGAATAACTATGTATTCTACAAATGTGTTGCTTTATGACTAT  275

seq1  GTAT-AAATAAATGCACATACATATAAAGAGTTTTTTTTCTATTGTTTTA  347
      |||| ||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GTATAAAAAAAATGCACATACATATAAAGAG-TTTTTTTCTATTGTTTTA  324

seq1  GGTGACCACATTTATCTTCAAACTTTATAGCCATATTTTTAAAACTCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCACATTTATCTTCAAACTTTATAGCCATATTTTTAAAACTCAAA  374

seq1  CTGTATCATATTTTCATTATGGATTGTTTTGAATATATTTCTTACAAAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATATTTTCATTATGGATTGTTTTGAATATATTTCTTACAAAAC  424

seq1  TATATAGATCGTGTATAAATGTTTATACTTATGTTCATACTATAGTTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGATCGTGTATAAATGTTTATACTTATGTTCATACTATAGTTTTA  474

seq1  CTGTCATATGCCCATAATTACTAATTTTGTTTTAAACTCATCATTACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATATGCCCATAATTACTAATTTTGTTTTAAACTCATCATTACTAA  524

seq1  ATATGATTAATTTAATTGTTCATTATTAAATACTGCATCCTGTTAGCAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTAATTTAATTGTTCATTATTAAATACTGCATCCTGTTAGCAAA  574

seq1  CTTTTATAATGCAGGTCTCCTTGTATACATGTGGGAGTTTCTCAAATAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATGCAGGTCTCCTTGTATACATGTGGGAGTTTCTCAAATAAT  624

seq1  GTAAAGCCAGAAATAAAACTGGTGGGTCATTCTAAGGGTTGTGAGCCCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCAGAAATAAAACTGGTGGGTCATTCTAAGGGTTGTGAGCCCAT  674

seq1  TCCTAGTGTCTTAGTATTTTAACAATTCATTGCAAATAAATTGGAATTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGTCTTAGTATTTTAACAATTCATTGCAAATAAATTGGAATTAT  724

seq1  ACATCTTTCTACATGTAAAAGGTAAATTTTATACACCAGAATTTAGCCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTCTACATGTAAAAGGTAAATTTTATACACCAGAATTTAGCCAA  774

seq1  ATGCCACTCAAAGATTATTGTGCACATATGGACGAGTTATGAAATGAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACTCAAAGATTATTGTGCACATATGGACGAGTTATGAAATGAATT  824

seq1  AGAATCTTCCTGGGTCTTTATTGAATTTGCTACACTCATTCACAAGGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCCTGGGTCTTTATTGAATTTGCTACACTCATTCACAAGGTCA  874

seq1  TATTGTCCTCTAATTGTATTTTTAACAAAATTTAGATACTTAATACCTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCCTCTAATTGTATTTTTAACAAAATTTAGATACTTAATACCTTG  924

seq1  ACTTTGCAAGACAAACACATCTCTATGCTTCAAGGTTAGATATGAAATAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAAGACAAACACATCTCTATGCTTCAAGGTTAGATATGAAATAC  974

seq1  TCTGTAGCCTATTTTAAACTATATATTGGAAATATTTTAAAAAGACAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCCTATTTTAAACTATATATTGGAAATATTTTAAAAAGACAAAA  1024

seq1  TACACAAATGAATGTAAGCCTAGAACTTATAGTGAAATAAAGGATACATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATGAATGTAAGCCTAGAACTTATAGTGAAATAAAGGATACATT  1074

seq1  CTGTATTATAAATGGTTAGATATTATATGGTAGTCACACTAAAATACAGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTATAAATGGTTAGATATTATATGGTAGTCACACTAAAATACAGC  1124

seq1  ATTAATATTTTGAATTC  1164
      |||||||||||||||||
seq2  ATTAATATTTTGAATTC  1141

seq1: chr19_19769470_19770038
seq2: B6Ng01-161L09.g_70_638

seq1  GAATTCTTCTGGGCAGAGAGAACCTACTCTACTGTCACTATGTCTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGGCAGAGAGAACCTACTCTACTGTCACTATGTCTTTAAT  50

seq1  CCAGAAAAGTAGAGTTTGGATGTGTAGCTTCTAGAACTATGAGAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGTAGAGTTTGGATGTGTAGCTTCTAGAACTATGAGAAAATAT  100

seq1  TGTGCTGTTTTAAAATACAAACTTGTCATAATTTGTTGTAGTAGCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTTAAAATACAAACTTGTCATAATTTGTTGTAGTAGCCAGGG  150

seq1  AAGATTAATATAGGAGAAAAGGCTACTAATTTTGAAATGCTAATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAATATAGGAGAAAAGGCTACTAATTTTGAAATGCTAATTTACAT  200

seq1  TTCCCTAGATGTTTGAGTTTTTACCACATTGTAGGCTACAGTGGTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGATGTTTGAGTTTTTACCACATTGTAGGCTACAGTGGTTTAAA  250

seq1  CATTCTACACTGGTGGAAATCTTTCTAAACTGAAATGTCACATAGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACACTGGTGGAAATCTTTCTAAACTGAAATGTCACATAGAAGCT  300

seq1  ATGTGTGGGAAACAGCATGGCTGTCTTAAGTGCTATTAGTACGTTCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGGAAACAGCATGGCTGTCTTAAGTGCTATTAGTACGTTCATGA  350

seq1  AAATATCCCCATTAAAATCAACTCAAGGTACAAAATGATGTGAGCATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCCCATTAAAATCAACTCAAGGTACAAAATGATGTGAGCATATA  400

seq1  TTGCAAAGATAATGAATCTGATTATATCATTCGCCTTATTTTATATGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGATAATGAATCTGATTATATCATTCGCCTTATTTTATATGGCG  450

seq1  AGACATTTGAATAATCTCTTCCCTATTTTTATATTTTTATTTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTGAATAATCTCTTCCCTATTTTTATATTTTTATTTCTCTCTCT  500

seq1  CTTTCTCCCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  550

seq1  CTCTCTCTCTCTCTCTCTC  569
      |||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTC  569