BAC Information

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BAC

Clone NameB6Ng01-161O10
Chromosome19 (Build37)
Map Location 49,246,103 - 49,349,414
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161O10.bB6Ng01-161O10.g
ACCDH954887DH954888
length1,1721,061
definitionDH954887|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O10, 5' end.DH954888|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,246,103 - 49,247,292)(49,348,332 - 49,349,414)
sequence
gaattcataaacacagttgaagaaggttcggatgcagtgtaaacatatgc
agaaacacagaaacaattaaagccagccctgtcttgcctaagggtggtat
gcatgggcatgcacagcacagatttattagcagccacacatctccatgga
cagtttgcaagtcaaatttctcatctgttttcaaaccatgattgtgtttg
aaatctttggcaaccagttgacaatgattccattaattaatgttccctgt
acataatatttccttctggttgtagagctgataagaaatatatctgattg
caaatattgtttaataattataataatggctatgatttattaatgccatg
gtctgcatgtattagtcggagcttttttgcatgcctcaatgggactctct
ttgccttgttgaatgtgagtgaagagaaaacaggctggtaaattattgct
gccattatgcaacacttaatatctcaagtaacaggtgagagagtaatgtt
ttcctgaccttacatcaatctgacctttccgtataacttaattagtgacc
aaaataaacatatctgctatgtctgagttgggtgaaagccaaagcttata
cctttcatgtgcagcagtcttgataaatttatgtgaaggcttgtttttat
aacaagatcactgtgtaaagccatcagcttaatttatacatctcccagtg
catgcacagtgagcaaagggctgtggccccaggctatgccaacactaatt
acatctcttcttccttttttttaactccataaaatagataaataaatacg
taaaagtgttgatgtggtagggattgcttgtgagtaacttcattaggtga
taggttggcagataaagtttttgcatatttcaacatgataaaatagaaat
taaaccctaagtctatatgttctacagataggaaatggatttttaccaca
gttcctaaaaacatctataaggagcaaacaaagtgcagatactcattgga
cttcttgaaacagtttaaaatgttttatgagaatggtactggttttggct
agtatgatagtatctctctggaggagaatggagtgtgtctatttcatatg
agacacctgattaattttcaatgagttgagcttggctgaataccgtaatt
gtccaagatgagaaagattaat
gaattccaaatataaggtcactgctcagagacttcctaaagacagagagc
ttgaaaagaaattcgttctgaatgtcactctcgtctcagctcacagtttc
ctgatccaaccgagatacactaattggctttgctgtcagcagcaggaaaa
aaaaaaaaaaaaaaaaagaataaataaaaccttatttactaacatccccg
aaggaggcagtgatgcccataatgagcctaggtttcaactgaagataatt
aattgagatataaacaggaaatgtccaattcctttgttcttaaattgtat
gaaagaccatgttctttctctgcaaaaaagaatatactgtcttttgtgac
acccgaggtttcaaaaggaaacatttagacattcaaagtatgagactcta
attctgggatttttttttttactccaaatttgagaatttagcagttttat
tattttataatctatcttactcagatttacgaaacaattttcttttactt
cttgtacgctacataacaaggtcaagtgtctcaggctagtggtctgacaa
ctacatctgtctggaagatgggttttattttacgtgagcagaatgttgag
agaaaaataaaaatgagccttctgaaagtgaagatttcaccctaatttgg
actcttccatcaagtcagtcactatccttatgaagaaactggctggaatg
aaaaacttgctacttccttttagtgaaggtagccagcctttccctgtagc
atcctcttagacctatgtaccaccccatattcataacatgtgacaccaga
cccgatgaacattacctgaatcttacaaatacagattcgctggctcgtta
tctcatcagaattctgaggaaaaagtcccaggcatcagagttttaacata
tatgaggtggctcccatatatagtaggatctgagtagctgacatgatact
gaccagtcatcagctactctgatttactgtgagcttgtgccctaaagcag
ctagtgagagttgctactcagagagtaagagatcatgactcaccattggg
ttgatctaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49246103_49247292
seq2: B6Ng01-161O10.b_46_1217

seq1  GAATTCATAAACACAGTTGAAGAAGGTTCGGATGCAGTGTAAACATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAACACAGTTGAAGAAGGTTCGGATGCAGTGTAAACATATGC  50

seq1  AGAAACACAGAAACAATTAAAGCCAGCCCTGTCTTGCCTAAGGGTGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAGAAACAATTAAAGCCAGCCCTGTCTTGCCTAAGGGTGGTAT  100

seq1  GCATGGGCATGCACAGCACAGATTTATTAGCAGCCACACATCTCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCATGCACAGCACAGATTTATTAGCAGCCACACATCTCCATGGA  150

seq1  CAGTTTGCAAGTCAAATTTCTCATCTGTTTTCAAACCATGATTGTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCAAGTCAAATTTCTCATCTGTTTTCAAACCATGATTGTGTTTG  200

seq1  AAATCTTTGGCAACCAGTTGACAATGATTCCATTAATTAATGTTCCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGGCAACCAGTTGACAATGATTCCATTAATTAATGTTCCCTGT  250

seq1  ACATAATATTTCCTTCTGGTTGTAGAGCTGATAAGAAATATATCTGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATTTCCTTCTGGTTGTAGAGCTGATAAGAAATATATCTGATTG  300

seq1  CAAATATTGTTTAATAATTATAATAATGGCTATGATTTATTAATGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGTTTAATAATTATAATAATGGCTATGATTTATTAATGCCATG  350

seq1  GTCTGCATGTATTAGTCGGAGCTTTTTTGCATGCCTCAATGGGACTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATGTATTAGTCGGAGCTTTTTTGCATGCCTCAATGGGACTCTCT  400

seq1  TTGCCTTGTTGAATGTGAGTGAAGAGAAAACAGGCTGGTAAATTATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGTTGAATGTGAGTGAAGAGAAAACAGGCTGGTAAATTATTGCT  450

seq1  GCCATTATGCAACACTTAATATCTCAAGTAACAGGTGAGAGAGTAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGCAACACTTAATATCTCAAGTAACAGGTGAGAGAGTAATGTT  500

seq1  TTCCTGACCTTACATCAATCTGACCTTTCCGTATAACTTAATTAGTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCTTACATCAATCTGACCTTTCCGTATAACTTAATTAGTGACC  550

seq1  AAAATAAACATATCTGCTATGTCTGAGTTGGGTGAAAGCCAAAGCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACATATCTGCTATGTCTGAGTTGGGTGAAAGCCAAAGCTTATA  600

seq1  CCTTTCATGTGCAGCAGTCTTGATAAATTTATGTGAAGGCTTGTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGTGCAGCAGTCTTGATAAATTTATGTGAAGGCTTGTTTTTAT  650

seq1  AACAAGATCACTGTGTAAAGCCATCAGCTTAATTTATACATCTCCCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCACTGTGTAAAGCCATCAGCTTAATTTATACATCTCCCAGTG  700

seq1  CATGCACAGTGAGC-AAGGGCTGTGGCCCCAGGCTATGCCAACACTAATT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATGCACAGTGAGCAAAGGGCTGTGGCCCCAGGCTATGCCAACACTAATT  750

seq1  ACATCTCTTCTTCCTTTTTTTTAACTCCATAAAATAGATAAATAAATACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTCTTCCTTTTTTTTAACTCCATAAAATAGATAAATAAATACG  800

seq1  TAAAAGTGTTGATGTGGTAGGGATTGCTTGTGAGTAACTTCATTAGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTTGATGTGGTAGGGATTGCTTGTGAGTAACTTCATTAGGTGA  850

seq1  TAGGTTGGCAGATAAAGTTTTTGCAATATTTCAACATGATAAAAATAGAA  899
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  TAGGTTGGCAGATAAAGTTTTTGC-ATATTTCAACATGAT-AAAATAGAA  898

seq1  ATTAAACCCTAAGTCTATATGTTCCTACAGATAAGGAAATGGATTTTTAC  949
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ATTAAACCCTAAGTCTATATGTT-CTACAGAT-AGGAAATGGATTTTTAC  946

seq1  CACAGTTCCTAAAAAACATCTATAAAGGAAGGCAAACAAAGTGCAGATAC  999
      |||||||||| |||||||||||| |||||  |||||||||||||||||| 
seq2  CACAGTTCCT-AAAAACATCTAT-AAGGA--GCAAACAAAGTGCAGATA-  991

seq1  CTCATTGGAACTCTTGAAAACAGTTTTAAAATGTTTTATGAGGAATGGTA  1049
      |||||||||  ||||| |||||| ||||||||||||||||| ||||||||
seq2  CTCATTGGACTTCTTG-AAACAG-TTTAAAATGTTTTATGA-GAATGGTA  1038

seq1  CTGGTTTTTGCTTAGTATGAATAGGTACTCTCTGGATGAGAATGGAGTGT  1099
      |||||||| || ||||||| ||||   ||||||||| |||||||||||||
seq2  CTGGTTTTGGC-TAGTATG-ATAGTATCTCTCTGGAGGAGAATGGAGTGT  1086

seq1  GTCCTATTCATAATGAAGACAACTGAATTATATTTTAAATGAGTTGAGCT  1149
      |||   ||||| ||| ||||| ||| |||| ||||| |||||||||||||
seq2  GTCTATTTCAT-ATG-AGACACCTG-ATTA-ATTTTCAATGAGTTGAGCT  1132

seq1  T-GCTGAATACCGTAAATTGTCTAAGATAGAAATAGATTAAT  1190
      | |||||||||||| ||||||| ||||| || | ||||||||
seq2  TGGCTGAATACCGT-AATTGTCCAAGAT-GAGAAAGATTAAT  1172

seq1: chr19_49348332_49349414
seq2: B6Ng01-161O10.g_70_1130 (reverse)

seq1  AATTATGATCAACACAATGGTGAAGGTCATGATTTCTCTTTACTCTTCCT  50
      ||||| ||||||| |||||||||  |||||||| ||   |||||||  ||
seq2  AATTA-GATCAACCCAATGGTGA--GTCATGATCTC---TTACTCT--CT  42

seq1  GAGTAAAGCAACTCTTCACTAAGCCTGCTTTAGGGGCACAGAGCTCACAG  100
      ||||  |||||||| ||||||   |||||||| ||||||| |||||||||
seq2  GAGT--AGCAACTC-TCACTA--GCTGCTTTA-GGGCACA-AGCTCACAG  85

seq1  TAAATCAGAGGTAGGCTGATGACTGGGTCAGTATCATGTCCAGCTACTCA  150
      ||||||||| ||| |||||||||| |||||||||||||| ||||||||||
seq2  TAAATCAGA-GTA-GCTGATGACT-GGTCAGTATCATGT-CAGCTACTCA  131

seq1  GATCCTACTATATATGGGAACCACCTCCTTATAT-TGTTAAAACTCTGAT  199
      ||||||||||||||||||| |||||||   |||| |||||||||||||||
seq2  GATCCTACTATATATGGGAGCCACCTC---ATATATGTTAAAACTCTGAT  178

seq1  GCCTGGGACTTTCTCCTCAGAATTCTGATGAGATAACGAGCCAGCGAATC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGACTTTTTCCTCAGAATTCTGATGAGATAACGAGCCAGCGAATC  228

seq1  TGTATTTGTAAGATTCAGGTAATGTTCATCGGGTCTGGTGTCACATGTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTAAGATTCAGGTAATGTTCATCGGGTCTGGTGTCACATGTTA  278

seq1  TGAAATATGGGGTGGTACATAGGTCTAAGAGGATGCTACAGGGAAAGGCT  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-AATATGGGGTGGTACATAGGTCTAAGAGGATGCTACAGGGAAAGGCT  327

seq1  GGCTACCTTCACTAAAAGGAAGTAGCAAGTTTTTCATTCCAGCCAGTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCTTCACTAAAAGGAAGTAGCAAGTTTTTCATTCCAGCCAGTTTC  377

seq1  TTCATAAGGATAGTGACTGACTTGATGGAAGAGTCCAAATTAGGGTGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGGATAGTGACTGACTTGATGGAAGAGTCCAAATTAGGGTGAAA  427

seq1  TCTTCACTTTCAGAAGGCTCATTTTTATTTTTCTCTCAACATTCTGCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTTTCAGAAGGCTCATTTTTATTTTTCTCTCAACATTCTGCTCA  477

seq1  CGTAAAATAAAACCCATCTTCCAGACAGATGTAGTTGTCAGACCACTAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAATAAAACCCATCTTCCAGACAGATGTAGTTGTCAGACCACTAGC  527

seq1  CTGAGACACTTGACCTTGTTATGTAGCGTACAAGAAGTAAAAGAAAATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACACTTGACCTTGTTATGTAGCGTACAAGAAGTAAAAGAAAATTG  577

seq1  TTTCGTAAATCTGAGTAAGATAGATTATAAAATAATAAAACTGCTAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTAAATCTGAGTAAGATAGATTATAAAATAATAAAACTGCTAAATT  627

seq1  CTCAAATTTGGAGTAAAAAAAAAAATCCCAGAATTAGAGTCTCATACTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTTGGAGTAAAAAAAAAAATCCCAGAATTAGAGTCTCATACTTT  677

seq1  GAATGTCTAAATGTTTCCTTTTGAAACCTCGGGTGTCACAAAAGACAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTAAATGTTTCCTTTTGAAACCTCGGGTGTCACAAAAGACAGTA  727

seq1  TATTCTTTTTTGCAGAGAAAGAACATGGTCTTTCATACAATTTAAGAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTTGCAGAGAAAGAACATGGTCTTTCATACAATTTAAGAACA  777

seq1  AAGGAATTGGACATTTCCTGTTTATATCTCAATTAATTATCTTCAGTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTGGACATTTCCTGTTTATATCTCAATTAATTATCTTCAGTTGA  827

seq1  AACCTAGGCTCATTATGGGCATCACTGCCTCCTTCGGGGATGTTAGTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGGCTCATTATGGGCATCACTGCCTCCTTCGGGGATGTTAGTAAA  877

seq1  TAAGGTTTTATTTATTCTTTTTTTTTTTTTTTTTTTTTCCTGCTGCTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTTATTTATTCTTTTTTTTTTTTTTTTTTTTTCCTGCTGCTGAC  927

seq1  AGCAAAGCCAATTAGTGTATCTCGGTTGGATCAGGAAACTGTGAGCTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCAATTAGTGTATCTCGGTTGGATCAGGAAACTGTGAGCTGAG  977

seq1  ACGAGAGTGACATTCAGAACGAATTTCTTTTCAAGCTCTCTGTCTTTAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGTGACATTCAGAACGAATTTCTTTTCAAGCTCTCTGTCTTTAGG  1027

seq1  AAGTCTCTGAGCAGTGACCTTATATTTGGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGAGCAGTGACCTTATATTTGGAATTC  1061