BAC Information

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BAC

Clone NameB6Ng01-162A24
Chromosome19 (Build37)
Map Location 34,662,932 - 34,664,139
singlet/doubletsinglet
Overlap geneIfit3
Upstream geneAI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2
Downstream geneOTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A24.bB6Ng01-162A24.g
ACCDH955000DH955001
length1,221429
definitionDH955000|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A24, 5' end.DH955001|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgcctatcttggctgacagggcaactctgtctgaaagcaaca
acagcaacaatactgtgtgcaattgaacatatgaagagtgtcagagaccc
ttctgaaggatgagcaaagggaaactctcagaagcaggtgctgaccacct
gtgtcctcacacaaggatgggagggtgtttgctcaggtatctctgggccc
ccagaggtgtggccaaacacttagctcctaactgtacacaggtctcaact
ggattgtgtggactgcaagaagaatggaagttcctatatacatgggttat
acttggttagctcagtgcagacatagatgctaaaacacctgtgttttgat
actctgatgagcattcacaatttccaatcatcttagcagaggaaggacct
tgaaaagactgggaaattttcatccatgtgtataacaaatattgatcatg
tccatcctcctgcacttcccatcatgtaccactaggattccccaccatat
ttccccacctgatttcttggcctctcctagcaaaactgccattgtttctt
cagaaaggggtagagaggtcttataaggttccccaaatgataaaagaaga
aacactgagacttaataagactgtattattttgctgtctcttaccaccac
acaaaagactgtattttgattgaaacttttacatttattctacaatttct
atttggcatatatgttaactttagaatcattcttagggatacacaaacac
acacacacacacacacacacacacacacacacacactcacacacacacag
ccctaaaaccacagtagaatacaaaaatgatgtgcaaagaatattctagc
cttaggcaaaggttaatccttcaggcttaagcaactacagtgaaatggaa
tgaagaaacagagtgaattttgttggggagttgtcatttattgcagagaa
aaaaaatgtgatcaaaaggtgctctgtctgctttaagctccaatccctac
atgatagtaatgaggttgcctgactggaaaattgtatggctaggatgagc
agaagaagtcaaggagagaaagcagtttcctttaaagaaatcaatcaaga
gcagtttgtcagcaatccttgggtaaggaaaggctcaatgctttttccag
cccatcctcttcaataaagcaacttccaaagacattctgtctctcacagt
acggagcctgagagagactgt
atcccatctttaaacaccaaacccagacactattgctgatgtcaaaaagc
acttgctgacaggagcctggtatagctgtcccctgagatgctctaccaga
gcctgaccaacacagatgcgatgttagcagacaaccatcagacttagcac
ggggaccccaatggaggagttaggggaagaacgaaggagctgaaggtgtt
tgcaaaacataggaagaataacaatatcaaccagaacccccatatctccc
agggactaaaactccaaccaaagagtacacatggagggacccatggctcc
agctggatatgtagcaaggatggctttatctggcatcagttggaggggag
gctcttggtcctgtgaaggctcaatgcctcagcataggggaatgctaggg
cagtaaggcaggagtgggtgggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34662932_34664139
seq2: B6Ng01-162A24.b_45_1265 (reverse)

seq1  ACAGTCTCTC---AGCTCTGTACTGT--GAGACAG-ATGTGCTGTGGAGT  44
      ||||||||||    |||| |||||||  ||||||| |||| || ||||  
seq2  ACAGTCTCTCTCAGGCTCCGTACTGTGAGAGACAGAATGT-CTTTGGA-A  48

seq1  GCTGCTT--ATGGGGAGAATGTGCTGAAAAAAGCA-TGAGCC-TTCCT--  88
      | |||||   ||  ||| ||| |||| |||||||| |||||| |||||  
seq2  GTTGCTTTATTGAAGAGGATGGGCTGGAAAAAGCATTGAGCCTTTCCTTA  98

seq1  GCCAAGGATTGCTGACAAACTGCTCTTGATTG-TTTCTTTAA--GGAACT  135
       ||||||||||||||||||||||||||||||| |||||||||  | ||||
seq2  CCCAAGGATTGCTGACAAACTGCTCTTGATTGATTTCTTTAAAGGAAACT  148

seq1  GCTTTCTCTCCCTGAC-TCCTCTGCTCATCCTAGCCATACAATTTTCCAG  184
      ||||||||||| |||| || ||||||||||||||||||||||||||||||
seq2  GCTTTCTCTCCTTGACTTCTTCTGCTCATCCTAGCCATACAATTTTCCAG  198

seq1  TCAGCAAACCTCATTACTAATCATGTAGGGAATGGAGCTTAAAGCAGACA  234
      ||||  |||||||||||| |||||||||||| ||||||||||||||||||
seq2  TCAGGCAACCTCATTACT-ATCATGTAGGGATTGGAGCTTAAAGCAGACA  247

seq1  GAGCACCTTTTGATCACATTTTTTTTCTCTGCAATAAATGACAACT-CCC  283
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGCACCTTTTGATCACATTTTTTTTCTCTGCAATAAATGACAACTCCCC  297

seq1  AACAAAATTCACTCTTGTTTCTTCATTCCATTTCACTGTAGTTGCTTAAG  333
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACAAAATTCACTC-TGTTTCTTCATTCCATTTCACTGTAGTTGCTTAAG  346

seq1  CCTGAAGGATTAACCTTTGCCTAAGGCTAGAATATTCTTTGCACATCATT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGATTAACCTTTGCCTAAGGCTAGAATATTCTTTGCACATCATT  396

seq1  TTTGTATTCTACTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTCTACTGTGGTTTTAGGGCTGTGTGTGTGTGAGTGTGTGTGTG  446

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATCCCTAAGAATGAT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTATCCCTAAGAATGAT  496

seq1  TCTAAAGTTAACATATATGCCAAATAGAAATTGTAGAATAAATGTAAAAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTTAACATATATGCCAAATAGAAATTGTAGAATAAATGTAAAAG  546

seq1  TTTCAATCAAAATACAGTCTTTTGTGTGGTGGTAAGAGACAGCAAAATAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCAAAATACAGTCTTTTGTGTGGTGGTAAGAGACAGCAAAATAA  596

seq1  TACAGTCTTATTAAGTCTCAGTGTTTCTTCTTTTATCATTTGGGGAACCT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTTATTAAGTCTCAGTGTTTCTTCTTTTATCATTTGGGGAACCT  646

seq1  TATAAGACCTCTCTACCCCTTTCTGAAGAAACAATGGCAGTTTTGCTAGG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACCTCTCTACCCCTTTCTGAAGAAACAATGGCAGTTTTGCTAGG  696

seq1  AGAGGCCAAGAAATCAGGTGGGGAAACATGGTGGGGAATCCTAGTGGTAC  733
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGGCCAAGAAATCAGGTGGGGAAATATGGTGGGGAATCCTAGTGGTAC  746

seq1  ATGATGGGAAGTGCAGGAGGATGGACATGATCAATATTTGTTATACACAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGAAGTGCAGGAGGATGGACATGATCAATATTTGTTATACACAT  796

seq1  GGATGAAAATTTCCCAGTCTTTTCAAGGTCCTTCCTCTGCTAAGATGATT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAATTTCCCAGTCTTTTCAAGGTCCTTCCTCTGCTAAGATGATT  846

seq1  GGAAATTGTGAATGCTCATCAGAGTATCAAAACACAGGTGTTTTAGCATC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTGAATGCTCATCAGAGTATCAAAACACAGGTGTTTTAGCATC  896

seq1  TATGTCTGCACTGAGCTAACCAAGTATAACCCATGTATATAGGAACTTCC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGCACTGAGCTAACCAAGTATAACCCATGTATATAGGAACTTCC  946

seq1  ATTCTTCTTGCAGTCCACACAATCCAGTTGAGACCTGTGTACAGTTAGGA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTGCAGTCCACACAATCCAGTTGAGACCTGTGTACAGTTAGGA  996

seq1  GCTAAGTGTTTGGCCACACCTCTGGGGGCCCAGAGATACCTGAGCAAACA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGTTTGGCCACACCTCTGGGGGCCCAGAGATACCTGAGCAAACA  1046

seq1  CCCTCCCATCCTTGTGTGAGGACACAGGTGGTCAGCACCTGCTTCTGAGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCATCCTTGTGTGAGGACACAGGTGGTCAGCACCTGCTTCTGAGA  1096

seq1  GTTTCCCTTTGCTCATCCTTCAGAAGGGTCTCTGACACTCTTCATATGTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTTTGCTCATCCTTCAGAAGGGTCTCTGACACTCTTCATATGTT  1146

seq1  CAATTGCACACAGTATTGTTGCTGTTGTTGCTTTCAGACAGAGTTGCCCT  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCACACAGTATTGTTGCTGTTGTTGCTTTCAGACAGAGTTGCCCT  1196

seq1  GTCAGCCAAGATAGGCATGGAATTC  1208
      |||||||||||||||||||||||||
seq2  GTCAGCCAAGATAGGCATGGAATTC  1221