BAC Information

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BAC

Clone NameB6Ng01-163C12
Chromosome19 (Build37)
Map Location 29,482,908 - 29,593,286
singlet/doubletdoublet
Overlap genePdcd1lg2
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274
Downstream geneC030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C12.bB6Ng01-163C12.g
ACCDH955813DH955814
length1,1671,171
definitionDH955813|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C12, 5' end.DH955814|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,482,908 - 29,484,061)(29,592,102 - 29,593,286)
sequence
gaattccaagcttctctgtatcctgaaacagaccggcctccagttcctgg
gctgtaatacaaggggccagtttccaggcagatttccctgtccccagctg
tgtatgtccttctttctacccacaagtccctatgctccagaggaggctag
ccattactcccttctatcaggttccagataagcccatacctgaatcttgg
ttgtagactttgggaaaggtgagaggacctgttctaaagcagctgcaggc
ttctcttaggtctcaagccttccccagcccctgccctttgttatttctcc
aaagccagtccagtcagagtaggcacaacacaacagtcaccacagtgcat
ttagaagaaaatgtcttagggagagacagaaatgggcgtgacatagcctc
tctttactctgtctctgttcataatggaagcccttggtaattttgtacac
ttaatgagatcattattatgcatattataatagtatgttttctgacctaa
tttgttgttttccattaccaatatatatacaatgttagaaggatctactg
tcctctctgtctctctgtttctgtctgtctgtctgtctgtctgtctcgct
ccctccctccttgtcagagacctttgggaacaaagaaagagcttatgagt
gtttataatgtaagagatttcacagttatttgtagtttaataaataaaga
cataggagccctttgctaagttcttaaaatgttttctcggttttgtttga
tatctaaccataatctccattactcttcttttaaaagttacttctataga
tttaaaagagtaatatgggtttcatagcaggcagaaaatgcaatataagg
tggaaaaaaagagcaactgcataccaaccacaaagccaccttcttgtccc
catcccgagaaacactctgtggagagttctgtagctgcccctctggcatt
ttttttctctttagatacatagctttccaagcaggccagcatgcagagac
ggcagctttgagttgctttggctttggttgtaaagacacttgggctttcc
ttgttttcaaactagtcaaggaaaggcttgtgtgggttgagcagcaactg
gagcaaattcagggcctaaagaaggggttctttctccatgctcgcttcct
gggaggggtgtgggctg
gaattcattgtgttattccctccactttaactttcaatttttgccagaga
tttaattgaaaatattacagcgtagcggaaatattcagattcaacccgaa
gctttggaatgaattcccgctgtaggctgagtgatttgtggtctggacag
actgccaaaggccgaaagcttccctgttcactgctctagttggcagcgtg
tatctgggagagtggaacctaaaactgaggggactaaagtctcgtgcatt
agccaactttatttagagcatcaggtagttgatactcttgagggttaggg
agactcacatgagtaaggttcaatcacaaggacaagccacatgtggcaat
atatatatatatatatatatattttttttttccatagaggcattcgaata
acaacagtggaagtaaacactccagtctgctacacctgggcggggcatgc
agacacattccaagaacagttctgtgttgtgaaggaataggtcccagatc
tcgttttctcataagcacagggcaagctcacagtctgggactgtgttccg
gcacctccgtttttttctcattttctaatagcaggttatccagagtagtt
ctgatttgagatgtagataaagctaaatgtcctttgatccctgactgtcc
cctaagccagcagattatgttagaacaacgaaagcattgtgtgtgagtct
ctgccaccaggaaccgagatccaaactatgtccagtatatcacgctatta
tattgatcagaaaaatctagagaatagcttgaaacgagacccatacgatt
agtagttctagtatcttatgggaatgtaagcccatatttgcctttaaata
ggaatacatattagttatgatgtcctgtgcaaatgggaaagtttattaaa
cctcgcgaagagaattaatatagccccttcatcagatgggatgagtgggt
ctattatggtctataatggtcccagggtccaagaattaattcaagtcctt
agtgaaaagtaatgtctcccttagtgcataggatcttagtgccagtggca
gacttgatctgatggtggggttgaatatctccttttgcccttagctgggg
ttgctatacttctgatggtacgcctgttcctcaccctgactctagagtcc
atgcccggggctggaaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29482908_29484061
seq2: B6Ng01-163C12.b_47_1213

seq1  GAATTCCAAGCTTCTCTGTATCCTGAAACAGACCGGCCTCCAGTTCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTTCTCTGTATCCTGAAACAGACCGGCCTCCAGTTCCTGG  50

seq1  GCTGTAATACAAGGGGCCAGTTTCCAGGCAGATTTCCCTGTCCCCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAATACAAGGGGCCAGTTTCCAGGCAGATTTCCCTGTCCCCAGCTG  100

seq1  TGTATGTCCTTCTTTCTACCCACAAGTCCCTATGCTCCAGAGGAGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCCTTCTTTCTACCCACAAGTCCCTATGCTCCAGAGGAGGCTAG  150

seq1  CCATTACTCCCTTCTATCAGGTTCCAGATAAGCCCATACCTGAATCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTCCCTTCTATCAGGTTCCAGATAAGCCCATACCTGAATCTTGG  200

seq1  TTGTAGACTTTGGGAAAGGTGAGAGGACCTGTTCTAAAGCAGCTGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACTTTGGGAAAGGTGAGAGGACCTGTTCTAAAGCAGCTGCAGGC  250

seq1  TTCTCTTAGGTCTCAAGCCTTCCCCAGCCCCTGCCCTTTGTTATTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGGTCTCAAGCCTTCCCCAGCCCCTGCCCTTTGTTATTTCTCC  300

seq1  AAAGCCAGTCCAGTCAGAGTAGGCACAACACAACAGTCACCACAGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGTCCAGTCAGAGTAGGCACAACACAACAGTCACCACAGTGCAT  350

seq1  TTAGAAGAAAATGTCTTAGGGAGAGACAGAAATGGGCGTGACATAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAAAATGTCTTAGGGAGAGACAGAAATGGGCGTGACATAGCCTC  400

seq1  TCTTTACTCTGTCTCTGTTCATAATGGAAGCCCTTGGTAATTTTGTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTCTGTCTCTGTTCATAATGGAAGCCCTTGGTAATTTTGTACAC  450

seq1  TTAATGAGATCATTATTATGCATATTATAATAGTATGTTTTCTGACCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGATCATTATTATGCATATTATAATAGTATGTTTTCTGACCTAA  500

seq1  TTTGTTGTTTTCCATTACCAATATATATACAATGTTAGAAGGATCTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTTCCATTACCAATATATATACAATGTTAGAAGGATCTACTG  550

seq1  TCCTCTCTGTCTCTCTGTTTCTGTCTGTCTGTCTGTCTGTCTGTCTCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGTCTCTCTGTTTCTGTCTGTCTGTCTGTCTGTCTGTCTCGCT  600

seq1  CCCTCCCTCCTTGTCAGAGACCTTTGGGAACAAAGAAAGAGCTTATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCTTGTCAGAGACCTTTGGGAACAAAGAAAGAGCTTATGAGT  650

seq1  GTTTATAATGTAAGAGATTTCACAGTTATTTGTAGTTTAATAAATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAATGTAAGAGATTTCACAGTTATTTGTAGTTTAATAAATAAAGA  700

seq1  CATAGGAGCCCTTTGCTAAGTTCTTAAAATGTTTTCTCGGTTTTGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGCCCTTTGCTAAGTTCTTAAAATGTTTTCTCGGTTTTGTTTGA  750

seq1  TATCTAACCATAATCTCCATTACTCTTCTTTTAAAAGTTACTTCTATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACCATAATCTCCATTACTCTTCTTTTAAAAGTTACTTCTATAGA  800

seq1  TTTAAAAGAGTAATATGGG-TTCATAGCAGGCAGAAAATGCAATATAAGG  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTAAAAGAGTAATATGGGTTTCATAGCAGGCAGAAAATGCAATATAAGG  850

seq1  TGGAAAAAAAGAGCAACTGCATACCAACCACAAAGCCACCTTCTTGTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGAAAAAAAGAGCAACTGCATACCAACCACAAAGCCACCTTCTTGT-CC  899

seq1  CCATCCCGAGAAACACTCTGTGGAGAGTTCTGTAGCTGCCCCTCTGGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCGAGAAACACTCTGTGGAGAGTTCTGTAGCTGCCCCTCTGGCAT  949

seq1  TTTTTTTCTCTTTAGATACATAGCTTTCCAAGCAGGCCAGCATGCAGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTTAGATACATAGCTTTCCAAGCAGGCCAGCATGCAGAGA  999

seq1  CGGCAGC-TTGAGTTGCTTTGGCTGT-GTTGTAAAGACACTTGGGCTTTC  1047
      ||||||| |||||||||||||||| | |||||||||||||||||||||||
seq2  CGGCAGCTTTGAGTTGCTTTGGCTTTGGTTGTAAAGACACTTGGGCTTTC  1049

seq1  CTTG-TTTCAAACTAGTCCAGGAAAGGCTGGT---GGGTGAGCAGCCACT  1093
      |||| ||||||||||||| |||||||||| ||   || |||||||| |||
seq2  CTTGTTTTCAAACTAGTCAAGGAAAGGCTTGTGTGGGTTGAGCAGCAACT  1099

seq1  GGAGCAAATTCA-GGCCTAAAG-AGTGGTTC-TTCTCCATGCTTCGC-TC  1139
      |||||||||||| ||||||||| || ||||| |||||||||| |||| ||
seq2  GGAGCAAATTCAGGGCCTAAAGAAGGGGTTCTTTCTCCATGC-TCGCTTC  1148

seq1  CT-GGAGG---GTGGGCTG  1154
      || |||||   ||||||||
seq2  CTGGGAGGGGTGTGGGCTG  1167

seq1: chr19_29592102_29593286
seq2: B6Ng01-163C12.g_68_1238 (reverse)

seq1  CACTTCTCCAGCCCCGGGCCCTTGACTTCTAGAGTGCAGGGTGAGGAGAC  50
      ||||| |||||||||||| | | ||| |||||||| ||||||||||| ||
seq2  CACTTTTCCAGCCCCGGG-CATGGAC-TCTAGAGT-CAGGGTGAGGA-AC  46

seq1  AGCGGAAACCATCAGAAAGATAGCAAACCCCCAGCTAAAGGGCAAAGGGA  100
      || |   ||||||||||  |||||||  |||||||| ||||||||| |||
seq2  AG-GCGTACCATCAGAAGTATAGCAA--CCCCAGCT-AAGGGCAAAAGGA  92

seq1  GATA-TCAACCACACCATCAGAGATCAAGTCTGCCCACTTGGGGCCAACT  149
      |||| |||||| |||||||  |||||||||||| |||||   |||  || 
seq2  GATATTCAACCCCACCATC--AGATCAAGTCTG-CCACT---GGC--AC-  133

seq1  TAAGATCCTATGCACTAAGGGAGACATTACTTTTCACTAAGGACTTG-AT  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAGATCCTATGCACTAAGGGAGACATTACTTTTCACTAAGGACTTGAAT  183

seq1  TTATTCTTGGACCCTGGGACCATAATAGACCATAATAGACCCACTCAT-C  247
      | ||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  TAATTCTTGGACCCTGGGACCATTATAGACCATAATAGACCCACTCATCC  233

seq1  CATCTGATGAAGGGGCTATATTTAATTCTCTTCGCGAGGTTTAAATAAAC  297
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  CATCTGATGAAGGGGCTATA-TTAATTCTCTTCGCGAGGTTT-AATAAAC  281

seq1  TTT-CCATTTGCACAGGACATCATAACTAATATGTATTCCTATTTAAAGG  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTTGCACAGGACATCATAACTAATATGTATTCCTATTTAAAGG  331

seq1  CAAATATGGGCTTACATT-CCATAAGATACTAGAACTACTAATCGTATGG  395
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAATATGGGCTTACATTCCCATAAGATACTAGAACTACTAATCGTATGG  381

seq1  GTCTCGTTTCAAGCTATTCTCTAGATTTTTCTGATCAATATAATAGCGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGTTTCAAGCTATTCTCTAGATTTTTCTGATCAATATAATAGCGTG  431

seq1  ATATACTGGACATAGTTTGGATCTCGGTTCCTGGTGGCAGAGACTCACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGGACATAGTTTGGATCTCGGTTCCTGGTGGCAGAGACTCACAC  481

seq1  ACAATGCTTTCGTTGTTCTAACATAATCTGCTGGCTTAGGGGACAGTCAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTTCGTTGTTCTAACATAATCTGCTGGCTTAGGGGACAGTCAG  531

seq1  GGATCAAAGGACATTTAGCTTTATCTACATCTCAAATCAGAACTACTCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAGGACATTTAGCTTTATCTACATCTCAAATCAGAACTACTCTG  581

seq1  GATAACCTGCTATTAGAAAATGAGAAAAAAACGGAGGTGCCGGAACACAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTGCTATTAGAAAATGAGAAAAAAACGGAGGTGCCGGAACACAG  631

seq1  TCCCAGACTGTGAGCTTGCCCTGTGCTTATGAGAAAACGAGATCTGGGAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACTGTGAGCTTGCCCTGTGCTTATGAGAAAACGAGATCTGGGAC  681

seq1  CTATTCCTTCACAACACAGAACTGTTCTTGGAATGTGTCTGCATGCCCCG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTCACAACACAGAACTGTTCTTGGAATGTGTCTGCATGCCCCG  731

seq1  CCCAGGTGTAGCAGACTGGAGTGTTTACTTCCACTGTTGTTATTCGAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGTAGCAGACTGGAGTGTTTACTTCCACTGTTGTTATTCGAATG  781

seq1  CCTCTATGGAAAAAAAAAATATATATATATATATATATATATTGCCACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGAAAAAAAAAATATATATATATATATATATATATTGCCACAT  831

seq1  GTGGCTTGTCCTTGTGATTGAACCTTACTCATGTGAGTCTCCCTAACCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTCCTTGTGATTGAACCTTACTCATGTGAGTCTCCCTAACCCT  881

seq1  CAAGAGTATCAACTACCTGATGCTCTAAATAAAGTTGGCTAATGCACGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTATCAACTACCTGATGCTCTAAATAAAGTTGGCTAATGCACGAG  931

seq1  ACTTTAGTCCCCTCAGTTTTAGGTTCCACTCTCCCAGATACACGCTGCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTCCCCTCAGTTTTAGGTTCCACTCTCCCAGATACACGCTGCCA  981

seq1  ACTAGAGCAGTGAACAGGGAAGCTTTCGGCCTTTGGCAGTCTGTCCAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGCAGTGAACAGGGAAGCTTTCGGCCTTTGGCAGTCTGTCCAGAC  1031

seq1  CACAAATCACTCAGCCTACAGCGGGAATTCATTCCAAAGCTTCGGGTTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCACTCAGCCTACAGCGGGAATTCATTCCAAAGCTTCGGGTTGA  1081

seq1  ATCTGAATATTTCCGCTACGCTGTAATATTTTCAATTAAATCTCTGGCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATATTTCCGCTACGCTGTAATATTTTCAATTAAATCTCTGGCAA  1131

seq1  AAATTGAAAGTTAAAGTGGAGGGAATAACACAATGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAAGTTAAAGTGGAGGGAATAACACAATGAATTC  1171