BAC Information

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BAC

Clone NameB6Ng01-164O17
Chromosome19 (Build37)
Map Location 45,995,614 - 46,128,947
singlet/doubletdoublet
Overlap gene9130011E15Rik, 4930505N22Rik, Hps6, Ldb1
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream genePprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O17.bB6Ng01-164O17.g
ACCDH957119DH957120
length1,142695
definitionDH957119|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O17, 5' end.DH957120|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,995,614 - 45,996,754)(46,128,254 - 46,128,947)
sequence
gaattcactctgtatcccaggctggcctagaactcacagagatccacttg
cctctccctccagggctaggaattcagatctgtgccattatgcttggcta
aaaaaattatatcccttcttgaattttttttttctttttccttttttctc
actgctagggatcaaaccccagggccttacacttgctaggcaagcactct
gtaccaagctaattattaagcctcagaactcaaaaaatcatcaactgttt
ctaaaggctgatacacagacaaaaggacagggcaagagagggaacaagaa
agcaggcgtggaccacacaatatgctgaagtctagactcaaacaaaaccg
aattgtgaacaataaatagtacaagtaaaaccagaatcatcctaactaac
tgcgaggctagaagggctactaacagtctgagcctgagtctaaaagtcag
aaaaagcacaaaggaagaggacagactcaagaaggaacattacctgacca
gagctcccgccaggtataatgcaggcgaactctacacttcttctggtaac
acagcagtttatgcactacctggacacaccgcctgcaataagaaaggaaa
cggacaagcttcagaatccatcacagttcacctggaccatttctgtaggg
aggcagctcggctggggccactgagactggggttaaaggaaaaaagataa
ttctgatgaatttcctctgtcagtctcttgcacacacacacacacacaca
cacacacacacacacacacacacacacacacacacacaatatttgtgcta
cccatgggactacaaccacttagaggcctgtaataaggcaccactgaaaa
ggctatcaatgtctcttccagaaggcctgttcgattcctagcacctacat
ggcagctaactactgtgtgtaactccggatccagggaatccaacatcttt
ctggcctctctggataccaggcatatatgtgctatgcaaggtgtacatgc
aggtaaaacaccccattacacataaaaacattgtaatttaaaaatgtaag
agacaaaaaatggattggattaaaaaaataaagacattaaggctctagat
caaattcaattctaagagatggctcagcagggtaccaggctt
gaattcttcctctgcaacctacaaggtaaaaagaaagaaaagaactgact
tcttcaaattgactgttctctctctctctctctctctgtctctctgtctg
tctctctctgtctctctctctcacactcacagacacacactcacaaacaa
atcatgcacacaaaagcaataaataacgtgaaagaaagaaaaaaaatgta
agagttcaagaccagccgggcagtggtggctcacacctttaatcccagcc
ctccggaggcagaggcaggcagatttctgagtttgaggccagcctggtct
acaaagtgagttccaggacagccagggctacacagagaagccctgtcttg
aaaaacaaaaacaaacaaacaaacaaacaaacaaaaagagttcaagaaaa
gtctccaccatatagaaaatctaaaattaaccaagcctatgtgaaccctg
tctcaacaataaaaagaatagcaacacatactagccactgtattgggggg
aagggaggttctttgagatagtgtctctgctaagcctcgccttagacgtg
taacagtcctgactcagcctactgaatgctggaattacagagaacgagcc
atacaggtcgactccagattaattttaaaaagatggcatcattcattctg
tatgtaatgatgtcacagtttgcttttttttaatacaaattttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45995614_45996754
seq2: B6Ng01-164O17.b_48_1189

seq1  GAATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTATCCCAGGCTGGCCTAGAACTCACAGAGATCCACTTG  50

seq1  CCTCTCCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCCAGGGCTAGGAATTCAGATCTGTGCCATTATGCTTGGCTA  100

seq1  AAAAAATTATATCCCTTCTTGAATTTTTTTTTTCTTTTTCCTTTTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATATCCCTTCTTGAATTTTTTTTTTCTTTTTCCTTTTTTCTC  150

seq1  ACTGCTAGGGATCAAACCCCAGGGCCTTACACTTGCTAGGCAAGCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGGGATCAAACCCCAGGGCCTTACACTTGCTAGGCAAGCACTCT  200

seq1  GTACCAAGCTAATTATTAAGCCTCAGAACTCAAAAAATCATCAACTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAGCTAATTATTAAGCCTCAGAACTCAAAAAATCATCAACTGTTT  250

seq1  CTAAAGGCTGATACACAGACAAAAGGACAGGGCAAGAGAGGGAACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGCTGATACACAGACAAAAGGACAGGGCAAGAGAGGGAACAAGAA  300

seq1  AGCAGGCGTGGACCACACAATATGCTGAAGTCTAGACTCAAACAAAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCGTGGACCACACAATATGCTGAAGTCTAGACTCAAACAAAACCG  350

seq1  AATTGTGAACAATAAATAGTACAAGTAAAACCAGAATCATCCTAACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAACAATAAATAGTACAAGTAAAACCAGAATCATCCTAACTAAC  400

seq1  TGCGAGGCTAGAAGGGCTACTAACAGTCTGAGCCTGAGTCTAAAAGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGCTAGAAGGGCTACTAACAGTCTGAGCCTGAGTCTAAAAGTCAG  450

seq1  AAAAAGCACAAAGGAAGAGGACAGACTCAAGAAGGAACATTACCTGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCACAAAGGAAGAGGACAGACTCAAGAAGGAACATTACCTGACCA  500

seq1  GAGCTCCCGCCAGGTATAATGCAGGCGAACTCTACACTTCTTCTGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCGCCAGGTATAATGCAGGCGAACTCTACACTTCTTCTGGTAAC  550

seq1  ACAGCAGTTTATGCACTACCTGGACACACCGCCTGCAATAAGAAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTTTATGCACTACCTGGACACACCGCCTGCAATAAGAAAGGAAA  600

seq1  CGGACAAGCTTCAGAATCCATCACAGTTCACCTGGACCATTTCTGTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAAGCTTCAGAATCCATCACAGTTCACCTGGACCATTTCTGTAGGG  650

seq1  AGGCAGCTCGGCTGGGGCCACTGAGACTGGGGTTAAAGGAAAAAAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTCGGCTGGGGCCACTGAGACTGGGGTTAAAGGAAAAAAGATAA  700

seq1  TTCTGATGAATTTCCTCTGTCAGTCTCTTGCACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGAATTTCCTCTGTCAGTCTCTTGCACACACACACACACACACA  750

seq1  CACACACACACACACACACACACACACACACACACACAATATTTGTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAATATTTGTGCTA  800

seq1  CCCATGGGACTACAACCACTTAGAGGCCTGTAATAAGGCACCACTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGACTACAACCACTTAGAGGCCTGTAATAAGGCACCACTGAAAA  850

seq1  GGCTATCAATGTCTCTTCCAGAAGGCCTGTTCGATTCCTAGCACCTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCAATGTCTCTTCCAGAAGGCCTGTTCGATTCCTAGCACCTACAT  900

seq1  GGCAGCTAACTACTGTGTGTAACTCCGGATCCAGGGAATCCAACATC-TT  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCAGCTAACTACTGTGTGTAACTCCGGATCCAGGGAATCCAACATCTTT  950

seq1  CTGGCCTCTCTGGATACCAGGCATATATGTGCTATGCAA-GTGTACATGC  998
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGGCCTCTCTGGATACCAGGCATATATGTGCTATGCAAGGTGTACATGC  1000

seq1  AGGTAAAACACCC--ATACACAT-AAAACATTGTTAATTTAAAAAATGTA  1045
      |||||||||||||   ||||||| ||||||||| |||||| |||||||||
seq2  AGGTAAAACACCCCATTACACATAAAAACATTG-TAATTT-AAAAATGTA  1048

seq1  AGAGACAGAAGAATGGATTGGATATAAAAAAATTAAAGACATTAAGGCTC  1095
      ||||||| || |||||||||||| |||||||| |||||||||||||||||
seq2  AGAGACA-AAAAATGGATTGGAT-TAAAAAAA-TAAAGACATTAAGGCTC  1095

seq1  TAGATCAAATTCAATTCTAAGAGATGGCTCAGCA-GGTACCAGGCTT  1141
      |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGATCAAATTCAATTCTAAGAGATGGCTCAGCAGGGTACCAGGCTT  1142

seq1: chr19_46128254_46128947
seq2: B6Ng01-164O17.g_69_763 (reverse)

seq1  GGAAAATATGTAATAAAAAAAAAGCAAACTGTGACATCATTACATACAGA  50
      ||||||| ||| || |||||||||||||||||||||||||||||||||||
seq2  GGAAAATTTGT-ATTAAAAAAAAGCAAACTGTGACATCATTACATACAGA  49

seq1  ATGAATGATGCCATCTTTT--AAATTAATCTGGAGTCGACCTGTCTGGCT  98
      |||||||||||||||||||  ||||||||||||||||||||||| |||||
seq2  ATGAATGATGCCATCTTTTTAAAATTAATCTGGAGTCGACCTGTATGGCT  99

seq1  CGTTCTCTGTAATTCCAGCATTCAGTAGGCTGAGTCAGGACTGTTACACG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTCTGTAATTCCAGCATTCAGTAGGCTGAGTCAGGACTGTTACACG  149

seq1  TCTAAGGCGAGGCTTAGCAGAGACACTATCTCAAAGAACCTCCCTTCCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCGAGGCTTAGCAGAGACACTATCTCAAAGAACCTCCCTTCCCC  199

seq1  CCAATACAGTGGCTAGTATGTGTTGCTATTCTTTTTATTGTTGAGACAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACAGTGGCTAGTATGTGTTGCTATTCTTTTTATTGTTGAGACAGG  249

seq1  GTTCACATAGGCTTGGTTAATTTTAGATTTTCTATATGGTGGAGACTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATAGGCTTGGTTAATTTTAGATTTTCTATATGGTGGAGACTTTT  299

seq1  CTTGAACTCTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTCAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTCAAG  349

seq1  ACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  399

seq1  CAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCGGAGGGCT  449

seq1  GGGATTAAAGGTGTGAGCCACCACTGCCCGGCTGGTCTTGAACTCTTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGTGTGAGCCACCACTGCCCGGCTGGTCTTGAACTCTTACA  499

seq1  TTTTTTTTCTTTCTTTCACGTTATTTATTGCTTTTGTGTGCATGATTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTCTTTCACGTTATTTATTGCTTTTGTGTGCATGATTTGT  549

seq1  TTGTGAGTGTGTGTCTGTGAGTGTGAGAGAGAGAGACAGAGAGAGACAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTGTGTGTCTGTGAGTGTGAGAGAGAGAGACAGAGAGAGACAGA  599

seq1  CAGAGAGACAGAGAGAGAGAGAGAGAGAGAACAGTCAATTTGAAGAAGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGAGAGAGAGAGAGAGAACAGTCAATTTGAAGAAGTC  649

seq1  AGTTCTTTTCTTTCTTTTTACCTTGTAGGTTGCAGAGAAAGAATTC  694
      ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTTCTTTTCTTTCTTTTTACCTTGTAGGTTGCAGAGGAAGAATTC  695