BAC Information

Click to search

BAC

Clone NameB6Ng01-165F20
Chromosome19 (Build37)
Map Location 24,596,601 - 24,754,481
singlet/doubletdoublet
Overlap genePip5k1b, E030010A14Rik, Pgm5
Upstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457, 2900009I07Rik
Downstream geneLOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165F20.bB6Ng01-165F20.g
ACCDH957441DH957442
length843745
definitionDH957441|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F20, 5' end.DH957442|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,753,645 - 24,754,481)(24,596,601 - 24,597,271)
sequence
gaattcatcttcatagtgtggagaatgttaccatgacttacattcctcta
ctgatttgtcatgtaatacaaaaggtggcaagggtgggggaggggaagga
aaacccgaggtgatggacaggtggttcagtgggtagtcctgtttgcggag
aaagcaggaggagctagtttaaaccctcacatgtgcaaggaggagatcct
tggaaattcccttgccagccagcctacctgaaacagcagcccctggccac
cccgcgcatgtgcacacacatgcacttgtgcacatacacatgtatataca
acacacaccccacaaaatgaattttaaaaagactctgaaaacaaaattta
tggccttaaagagactaacacaatttatgcaaaccgagttgaacatttgc
tttagccaatgtacaactccagttgtacaaaaaccatctattctgtgtgt
gaatctggttagaagtccaataatgcgggtccatcggacccagaggggaa
actgccctgcagagggatgaaaagaaatgacaagaaaggagtaatgaatt
tcactgctaataaacaatccctttccggctaaacaaccaccagtggcctt
cctatcctgccattccctcattgtcatggattcaaagcagagatacacaa
aggtcatgggactagggttgtgttcgtttggcatcgtatattgattagga
tggttcacgacctgtgaactcagtagtgaccaggaatcagaaactggtgc
catccagtccccactttggtggacctcttttcttgaacagctcatccctc
catgtgagtttttaaagactcagctgtgcctggtcacggtggc
gaattccacatcattttgaggcgacatctaccccaatgaaaaggtgtatc
acttgccagtcttgttctgtaggctggacatagtgacatcctgctagcta
ttccagaataaaaacagaaggaagtgaaaagaaacctttagcattagcac
acctggcgagcggccagctagtctagagcagtatcagaggtgataaccct
cgtgactgaactagtgtcctaatgtgatgtcgtgaggatggcgtttgacc
ttcccaggatgcactattctagtctaatgataaaaacaatggacaaatct
ccatcgaagggctttatataaaaccacttgacagtaattctcaaaattgt
caaggccaggaaaagcagggaaaatccaagagacaaccaagaggagccta
aggggtcatgtgataggatctcagaagaaagggacatggggagaaatgta
aaacctgagtcaattgtagactgaagttaaaaattgttatctgctctgga
cttaagacaaacgtaccacaccaatgaaggacaaagaaagaaacctggag
gtaagataccaagaattctctctactgctatgtatgacagaactcttcta
tgttgtggatctgtagcatcccaaaagacccgtgttagggcttggtcacc
aatctatggcactatcgagaagtatgccaagtggatggaaattacatcac
tggggttgaaccttatctcattggctcgtgttgtgttgtttgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24753645_24754481
seq2: B6Ng01-165F20.b_44_886 (reverse)

seq1  GCCACAGTGA-CAGGCACAGCTGAGTCTTTAAAAACTCACAGGGAGGGAT  49
      ||||| |||| |||||||||||||||||||||||||||||| ||||||||
seq2  GCCACCGTGACCAGGCACAGCTGAGTCTTTAAAAACTCACATGGAGGGAT  50

seq1  GAAGCTG-TCAAG-AAAGAGGT-CAACAAAGT-GGGACTGGATGGCCACA  95
      | ||||| ||||| |||||||| || |||||| |||||||||||||  ||
seq2  G-AGCTGTTCAAGAAAAGAGGTCCACCAAAGTGGGGACTGGATGGCACCA  99

seq1  GTTTCTGATTCCTGGTCACTACTGAGTTCACAGGTCGTGAA-CATCCTAA  144
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTCTGATTCCTGGTCACTACTGAGTTCACAGGTCGTGAACCATCCTAA  149

seq1  TCAATATACGATGCCAAACGAACACAACCCTAGT-CCATGACCTTTGTGT  193
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAATATACGATGCCAAACGAACACAACCCTAGTCCCATGACCTTTGTGT  199

seq1  ATCTCTGCTTTGAATCCATGACAATGAGGGAATGGCAGGATAGGAAGGCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCTTTGAATCCATGACAATGAGGGAATGGCAGGATAGGAAGGCC  249

seq1  ACTGGTGGTTGTTTAGCCGGAAAGGGATTGTTTATTAGCAGTGAAATTCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGTTGTTTAGCCGGAAAGGGATTGTTTATTAGCAGTGAAATTCA  299

seq1  TTACTCCTTTCTTGTCATTTCTTTTCATCCCTCTGCAGGGCAGTTTCCCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTTTCTTGTCATTTCTTTTCATCCCTCTGCAGGGCAGTTTCCCC  349

seq1  TCTGGGTCCGATGGACCCGCATTATTGGACTTCTAACCAGATTCACACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCGATGGACCCGCATTATTGGACTTCTAACCAGATTCACACAC  399

seq1  AGAATAGATGGTTTTTGTACAACTGGAGTTGTACATTGGCTAAAGCAAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGATGGTTTTTGTACAACTGGAGTTGTACATTGGCTAAAGCAAAT  449

seq1  GTTCAACTCGGTTTGCATAAATTGTGTTAGTCTCTTTAAGGCCATAAATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTCGGTTTGCATAAATTGTGTTAGTCTCTTTAAGGCCATAAATT  499

seq1  TTGTTTTCAGAGTCTTTTTAAAATTCATTTTGTGGGGTGTGTGTTGTATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGAGTCTTTTTAAAATTCATTTTGTGGGGTGTGTGTTGTATA  549

seq1  TACATGTGTATGTGCACAAGTGCATGTGTGTGCACATGCGCGGGGTGGCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTATGTGCACAAGTGCATGTGTGTGCACATGCGCGGGGTGGCC  599

seq1  AGGGGCTGCTGTTTCAGGTAGGCTGGCTGGCAAGGGAATTTCCAAGGATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGCTGTTTCAGGTAGGCTGGCTGGCAAGGGAATTTCCAAGGATC  649

seq1  TCCTCCTTGCACATGTGAGGGTTTAAACTAGCTCCTCCTGCTTTCTCCGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTGCACATGTGAGGGTTTAAACTAGCTCCTCCTGCTTTCTCCGC  699

seq1  AAACAGGACTACCCACTGAACCACCTGTCCATCACCTCGGGTTTTCCTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGACTACCCACTGAACCACCTGTCCATCACCTCGGGTTTTCCTTC  749

seq1  CCCTCCCCCACCCTTGCCACCTTTTGTATTACATGACAAATCAGTAGAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCACCCTTGCCACCTTTTGTATTACATGACAAATCAGTAGAGG  799

seq1  AATGTAAGTCATGGTAACATTCTCCACACTATGAAGATGAATTC  837
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGTCATGGTAACATTCTCCACACTATGAAGATGAATTC  843

seq1: chr19_24596601_24597271
seq2: B6Ng01-165F20.g_144_811

seq1  ACATAGTGACATCCTGCTAGCTATTCCAGAATAAAAACAGAAGGAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGACATCCTGCTAGCTATTCCAGAATAAAAACAGAAGGAAGTGA  50

seq1  AAAGAAACCTTTAGCATTAGCACACCTGGCGAGCGGCCAGCTAGTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCTTTAGCATTAGCACACCTGGCGAGCGGCCAGCTAGTCTAGA  100

seq1  GCAGTATCAGAGGTGATAACCCTCGTGACTGAACTAGTGTCCTAATGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCAGAGGTGATAACCCTCGTGACTGAACTAGTGTCCTAATGTGA  150

seq1  TGTCGTGAGGATGGCGTTTGACCTTCCCAGGATGCACTATTCTAGTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGAGGATGGCGTTTGACCTTCCCAGGATGCACTATTCTAGTCTAA  200

seq1  TGATAAAAACAATGGACAAATCTCCATCGAAGGGCTTTATATAAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAACAATGGACAAATCTCCATCGAAGGGCTTTATATAAAACCAC  250

seq1  TTGACAGTAATTCTCAAAATTGTCAAGGCCAGGAAAAGCAGGGAAAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTAATTCTCAAAATTGTCAAGGCCAGGAAAAGCAGGGAAAATCC  300

seq1  AAGAGACAACCAAGAGGAGCCTAAGGGGTCATGTGATAGGATCTCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAACCAAGAGGAGCCTAAGGGGTCATGTGATAGGATCTCAGAAG  350

seq1  AAAGGGACATGGGGAGAAATGTAAAACCTGAGTCAATTGTAGACTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACATGGGGAGAAATGTAAAACCTGAGTCAATTGTAGACTGAAGT  400

seq1  TAAAAATTGTTATCTGCTCTGGACTTAAGACAAACGTACCACACCAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTGTTATCTGCTCTGGACTTAAGACAAACGTACCACACCAATGA  450

seq1  AGGACAAAGAAAGAAACCTGGAGGTAAGATACCAAGAATTCTCTCTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGAAAGAAACCTGGAGGTAAGATACCAAGAATTCTCTCTACTG  500

seq1  CTATGTATGACAGAACTCTTCTATGTTGTGGATCTGTAGCATCCCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGACAGAACTCTTCTATGTTGTGGATCTGTAGCATCCCAAAAG  550

seq1  ACCCGTGTTAGGGCTTGGTCACCAATCTATGGCACTATCGAGAAGTAATG  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACCCGTGTTAGGGCTTGGTCACCAATCTATGGCACTATCGAGAAGT-ATG  599

seq1  CCAAGTGGATGGAAATTACATCACTGGGGTTGAACCTTATCTCATTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGATGGAAATTACATCACTGGGGTTGAACCTTATCTCATTGGCT  649

seq1  TCTGTTGTTGTTGTTTTGTTT  671
        ||||| ||||| |||||||
seq2  CGTGTTG-TGTTG-TTTGTTT  668