BAC Information

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BAC

Clone NameB6Ng01-165O16
Chromosome19 (Build37)
Map Location 7,562,000 - 7,563,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547
Downstream gene5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O16.bB6Ng01-165O16.g
ACCDH957845DH957846
length1,0901,199
definitionDH957845|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O16, 5' end.DH957846|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccaaggagaaaccctctctctaaatcctacctgtcc
taaaaaaaaaaaaaaaaaccaagccaaagtaaacccaaaacccaactatg
aacagagctgagtcctggagtttatgcccagaactgaaaaaattacatat
gcttatgagttgtttgacaatgggggtgtgctgtgagaatggcgttagga
agttcattcttgtgggacattagagagtgcattttcagaactctccacgg
aatggtctatgtggtttctgatgcaatcaactgattcaaagagcacaaga
tatgcaaagctgcttacggtgtcacatgtagactgctttcattttataag
aaatgttaaatatagtaaggccaagcatcatcagcatgttgcttgccagg
accaggcattattagctgtacgcacttggacgcacaatcttttcacgtga
ttgacaggcctccagcacaatcacgtgacaggttacataccacaatgctc
acatcactaaatgataagagttttttggctgtcgttgaccataatgttag
tatgtagtacatgactgtattgtaaagtttccttcatcattaacctcctc
ctccacattgctacacagcaagtaaccatgactaacgtcttctagcttaa
gcaacagctggtatggctaatctttacttacatctacctttaaaacaagc
atttttttctttttgtttgctttcttaggacaggtctctggctgtcctgg
cattcaatatataaagccaggctggccttgaactcagagatccacctgcc
tctgcctcccaagtgctggcattatttaaagtgtgtatcactatgcccaa
tttacaaagttttttataattttaaattacatatatattgtttggggggg
aggggttacacacatgtgagtacaggggctctaagaggccaggggcattg
aacctgtggagctgagttacatgagccgtgctgggaaccaagcttggaac
ctctagaagagtagctgtaggtgctcttacaccaagccttctcttcgact
tgcacacccacctttttctggtgtttaagacaaggtctct
gaattctgtcatgctggtgcttacagattgctcctgaaaacccatggaga
ggaggttctattagctatggggttataaaataaatcgacaaaaaaaaaaa
aaatcagctacacaaggtacagatcagaagagatcagttgtgaactctga
ttctcaaaaattaatggaagatattaattggctatgccctaccattaggt
taactaatcaagagttaagtaatttgtgtcaaacattacaaggagattca
gacttaaacactccaaaatggttaacaaatgaagcagagagttaactctg
ggagaacagagagagactgcaagatgactttgtagatcacgtagatccta
aacttgatggtagtttggttattttgccatcaactcattctcctacaggg
ctcataatgaaaggggagacggttttatggaatggattttcatagcacac
aaagtaaaaaaaaaaatgataaagaattacttagaaaacattctgattta
atcataaaggaaaaataagactacatcaattgttgggaacagacccagca
gaaatcatagtactttttattaatgctaaaattatgtcattataggtcat
caatgaaggttagcaaaaaaagtgtgtagcaactatttgggaggaattag
aggcaaatatcctaaaaacaagtgtcttcagtttataaaaagaactgatt
ggattctcccatgtatttattgtaaaaggaatgccagttcctgaagcatc
tacattctctactgatgcaaataatagtgaatggcatgctataagtcaga
caaaataagcaaagttatttttttaatttgtattattaaaggtaatgaag
aacccagatgcccctcacagaggaacggataccaataatgtggtacattt
acacatggagtactactcagctataaaaagaatgaatttatgaaatccta
ggcaatggatggacctggagggcatcattctgagtgaggtaccaaatcac
aaaagactcaatgatatgtacttcactgattagtggattttagcccagaa
ctagaaacccaggaatataagatacaatttgtgaaacatgaactgagaag
aacgaaaacaaagggtggaaccttggcctcggtgaattggacgacacatt
gagatacagaccaagttggactgaacaaggagtggtacctctccatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7562000_7563090
seq2: B6Ng01-165O16.b_46_1135

seq1  GAATTCCAGGACAGCCAAGGAGAAACCCTCTCTCTAAATCCTACCTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGGAGAAACCCTCTCTCTAAATCCTACCTGTCC  50

seq1  TAAAAAAAAAAAAAAAAACCAAGCCAAAGTAAACCCAAAACCCAACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAAACCAAGCCAAAGTAAACCCAAAACCCAACTATG  100

seq1  AACAGAGCTGAGTCCTGGAGTTTATGCCCAGAACTGAAAAAATTACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCTGAGTCCTGGAGTTTATGCCCAGAACTGAAAAAATTACATAT  150

seq1  GCTTATGAGTTGTTTGACAATGGGGGTGTGCTGTGAGAATGGCGTTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGAGTTGTTTGACAATGGGGGTGTGCTGTGAGAATGGCGTTAGGA  200

seq1  AGTTCATTCTTGTGGGACATTAGAGAGTGCATTTTCAGAACTCTCCACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCTTGTGGGACATTAGAGAGTGCATTTTCAGAACTCTCCACGG  250

seq1  AATGGTCTATGTGGTTTCTGATGCAATCAACTGATTCAAAGAGCACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTATGTGGTTTCTGATGCAATCAACTGATTCAAAGAGCACAAGA  300

seq1  TATGCAAAGCTGCTTACGGTGTCACATGTAGACTGCTTTCATTTTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAGCTGCTTACGGTGTCACATGTAGACTGCTTTCATTTTATAAG  350

seq1  AAATGTTAAATATAGTAAGGCCAAGCATCATCAGCATGTTGCTTGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAAATATAGTAAGGCCAAGCATCATCAGCATGTTGCTTGCCAGG  400

seq1  ACCAGGCATTATTAGCTGTACGCACTTGGACGCACAATCTTTTCACGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCATTATTAGCTGTACGCACTTGGACGCACAATCTTTTCACGTGA  450

seq1  TTGACAGGCCTCCAGCACAATCACGTGACAGGTTACATACCACAATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGCCTCCAGCACAATCACGTGACAGGTTACATACCACAATGCTC  500

seq1  ACATCACTAAATGATAAGAGTTTTTTGGCTGTCGTTGACCATAATGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTAAATGATAAGAGTTTTTTGGCTGTCGTTGACCATAATGTTAG  550

seq1  TATGTAGTACATGACTGTATTGTAAAGTTTCCTTCATCATTAACCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTACATGACTGTATTGTAAAGTTTCCTTCATCATTAACCTCCTC  600

seq1  CTCCACATTGCTACACAGCAAGTAACCATGACTAACGTCTTCTAGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTGCTACACAGCAAGTAACCATGACTAACGTCTTCTAGCTTAA  650

seq1  GCAACAGCTGGTATGGCTAATCTTTACTTACATCTACCTTT-AAACAAGC  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAACAGCTGGTATGGCTAATCTTTACTTACATCTACCTTTAAAACAAGC  700

seq1  A-TTTTTTCTTTTTGTTTGCTTTCTTAGGACAGGTCTCTGGCTGTCCTGG  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCTTTTTGTTTGCTTTCTTAGGACAGGTCTCTGGCTGTCCTGG  750

seq1  CATTCAATATATAAAGCCAGGCTGGCCTTGAACTCAGAGATCCACCTGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATATATAAAGCCAGGCTGGCCTTGAACTCAGAGATCCACCTGCC  800

seq1  TCTGCCTCCCAAGTGCTGGCATTATTTAAAGTGTGTATCACTATGCCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGCATTATTTAAAGTGTGTATCACTATGCCCAA  850

seq1  TTTACAAAAGTATTTTTATAATTTTAAATTACATATATA-TGTT--GGGG  895
      ||||| ||||| ||||||||||||||||||||||||||| ||||  ||||
seq2  TTTAC-AAAGT-TTTTTATAATTTTAAATTACATATATATTGTTTGGGGG  898

seq1  GGAGGGG-TACACACATGTGAGTACAGGGGCTCTAAGAGGCCAGGGGCAT  944
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTTACACACATGTGAGTACAGGGGCTCTAAGAGGCCAGGGGCAT  948

seq1  TGAACCTGTGGAGCTGGAGTTACATGAGCGGTGCTGGGAACCAAGCTTGG  994
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TGAACCTGTGGAGCT-GAGTTACATGAGCCGTGCTGGGAACCAAGCTTGG  997

seq1  AACCTCTAGAAGAGCTAGCTGTAGGTGCTCTTAACCACCAAGCCATCTCT  1044
      |||||||||||||| ||||||||||||||||||  ||||||||| |||||
seq2  AACCTCTAGAAGAG-TAGCTGTAGGTGCTCTTA--CACCAAGCCTTCTCT  1044

seq1  TCAGCCTTGCACACCCACCCTTTCTTGTTGTTTGAGACAAGGTCTCT  1091
      || | |||||||||||||| |||  || ||||| |||||||||||||
seq2  TC-GACTTGCACACCCACCTTTTTCTGGTGTTTAAGACAAGGTCTCT  1090