BAC Information

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BAC

Clone NameB6Ng01-165P19
Chromosome19 (Build37)
Map Location 7,426,813 - 7,569,301
singlet/doubletdoublet
Overlap geneAI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik
Upstream geneNrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2
Downstream geneHrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165P19.bB6Ng01-165P19.g
ACCDH957893DH957894
length1,1101,032
definitionDH957893|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P19, 5' end.DH957894|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,426,813 - 7,427,906)(7,568,275 - 7,569,301)
sequence
gaattctagtctagccaaggctacataaaaagattctgtcacaatgaaac
aaaacctctgataattaagtgctctctttcttcaggctggttttctccct
agcatgcatttgtttgctattggtctcccccaggatggtcacaccatgac
atggggctttgtctggctccttcctagctctgctctctagaacccctgtg
gcataaaggagtcactcagccagctcggaatgaacccagttgtgtgaaga
agctcttaagtgtgaactgggagtactatcaatatgcagctattcctacc
aactatcccaccctggtggggtgctgtgagcgagtccgtgggtacttttc
tcagaggtaaattgctcccccaggcaaatgtgggtgtcgtgggtgagtaa
acagtaaagagagtgtggaggggacaggccagagtctgagagagctccac
cactgtgtcctgccctgtgtgaggttagccattgcttttgtaccttccag
agctattgaaccagaggcagagattgctgagggaggccagagcaaggtta
ccccggctctaggagttaccttctgaagaaaagggttggggggaatggga
gactcttccctaaagccctgggcttggctgccagccactgccgtctggtc
acttttctacgcctatagtgagcccctccagctggccctggcaagcagcg
tatgatcaagtgccaggtccacaagacaacagtccaagtgctggacatgg
agacgatctgagctggcggttctgatccttttactagccctggcagacaa
gtcaccacgtccctctcccttttctccgtttcgtaacctgtacatgggca
caatatagttgtgactcatgacaaaaccagggtaggtgttctgtgtccca
agatcttagcagtatgtgttcctggagtccctccctagtattttgccgga
attcacccccacagtgtggtccatcctgtcaacctgctgttgactgatgt
tgactcctgggtgttgaaagataactaaagggctattaaggtctctttct
tttggagggctgcccacatctgtttcccatggagatcagggcaatttagt
attgtgaagg
gaattccgagccgagacacccggcggtgcggcctcccgtcgccacaccaa
aaaaggcggcggcagggacggcttgtcacctcggagccgaagcactggga
ggcagcgtgggtaaccacggaccgggtcccgggaaaattggacgcctcac
ctgctcctctcgatgccaccgctgcagttcgctgaggggacaacatggag
cctcctccttcagcagaagtagcagaggcagagaagacaggagcgggttg
aggctgccctggaggagggaaacaggcggagcctggacttggggagaaac
cgagaaggaggggcgcgcggagaaagcctacagctcaggagacagccctg
ccgatggcgcagggcgtgacgagggcgggaaagcgcacgcggccgagtcc
cgccaccgttcggtgcgcgtgcgccggagcggggatcgtgccgcgggtac
ctgtgactgcgtactggaatgtcgggtccatcgggaattgtagttcggcg
ttttcttgggcccggcccctctgacccgggtgttcgccctcatccggggc
gtagaggaaacggaggacaggactgggccgagtgggtcttcctaccgctg
aactacaactcccattaggccttgcaaagggaaaaaaatgaggagggctc
tcggaagaccctgcccggcgcctaacccggggaccagggccgggctttgg
ccacccggttcccgccgggagcccccacccggcccgcgtgctgggctctg
gtgttcctcgctggccaggactacaggtggtggtatgaaagaatttaaca
tgatgacgcgaacgcttcgactttgacttcacaaggacagaccatcgtga
cttcattatcatcaccatcacccctaatctctgatctgaccaaggcttac
taaagctaaagtaacgccggtcgtggtggcgcacgccttttaatcccagc
acttggggaggcagagcaggaggatttctgagttcgaagccagcctggtc
taccaaaggtgagttccttggaacagccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7426813_7427906
seq2: B6Ng01-165P19.b_46_1155

seq1  GAATTCTAGTCTAGCCAAGGCTACATAAAAAGATTCTGTCACAATGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCTAGCCAAGGCTACATAAAAAGATTCTGTCACAATGAAAC  50

seq1  AAAACCTCTGATAATTAAGTGCTCTCTTTCTTCAGGCTGGTTTTCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCTGATAATTAAGTGCTCTCTTTCTTCAGGCTGGTTTTCTCCCT  100

seq1  AGCATGCATTTGTTTGCTATTGGTCTCCCCCAGGATGGTCACACCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATTTGTTTGCTATTGGTCTCCCCCAGGATGGTCACACCATGAC  150

seq1  ATGGGGCTTTGTCTGGCTCCTTCCTAGCTCTGCTCTCTAGAACCCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTTTGTCTGGCTCCTTCCTAGCTCTGCTCTCTAGAACCCCTGTG  200

seq1  GCATAAAGGAGTCACTCAGCCAGCTCGGAATGAACCCAGTTGTGTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGGAGTCACTCAGCCAGCTCGGAATGAACCCAGTTGTGTGAAGA  250

seq1  AGCTCTTAAGTGTGAACTGGGAGTACTATCAATATGCAGCTATTCCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAAGTGTGAACTGGGAGTACTATCAATATGCAGCTATTCCTACC  300

seq1  AACTATCCCACCCTGGTGGGGTGCTGTGAGCGAGTCCGTGGGTACTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCCACCCTGGTGGGGTGCTGTGAGCGAGTCCGTGGGTACTTTTC  350

seq1  TCAGAGGTAAATTGCTCCCCCAGGCAAATGTGGGTGTCGTGGGTGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTAAATTGCTCCCCCAGGCAAATGTGGGTGTCGTGGGTGAGTAA  400

seq1  ACAGTAAAGAGAGTGTGGAGGGGACAGGCCAGAGTCTGAGAGAGCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAGAGAGTGTGGAGGGGACAGGCCAGAGTCTGAGAGAGCTCCAC  450

seq1  CACTGTGTCCTGCCCTGTGTGAGGTTAGCCATTGCTTTTGTACCTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTCCTGCCCTGTGTGAGGTTAGCCATTGCTTTTGTACCTTCCAG  500

seq1  AGCTATTGAACCAGAGGCAGAGATTGCTGAGGGAGGCCAGAGCAAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGAACCAGAGGCAGAGATTGCTGAGGGAGGCCAGAGCAAGGTTA  550

seq1  CCCCGGCTCTAGGAGTTACCTTCTGAAGAAAAGGGTTGGGGGGAATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCTCTAGGAGTTACCTTCTGAAGAAAAGGGTTGGGGGGAATGGGA  600

seq1  GACTCTTCCCTAAAGCCCTGGGCTTGGCTGCCAGCCACTGCCGTCTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCCTAAAGCCCTGGGCTTGGCTGCCAGCCACTGCCGTCTGGTC  650

seq1  ACTTTTCTACGCCTATAGTGAGCCCCTCCAGCTGGCCCTGGCAAGCAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTACGCCTATAGTGAGCCCCTCCAGCTGGCCCTGGCAAGCAGCG  700

seq1  TATGATCAAGTGCCAGGTCCACAAGACAACAGTCCAAGTGCTGGACATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAAGTGCCAGGTCCACAAGACAACAGTCCAAGTGCTGGACATGG  750

seq1  AGACGATCTGAGCTGGCGGTTCTGATCCTTTTACTAGCCCTGGCAGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGATCTGAGCTGGCGGTTCTGATCCTTTTACTAGCCCTGGCAGACAA  800

seq1  GTCACCACGTCCCTCTCCCTTTTCTCCGTTTCGTAACCTGTACAATGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCACCACGTCCCTCTCCCTTTTCTCCGTTTCGTAACCTGTAC-ATGGGC  849

seq1  ACAATATAG-TGTGACTCATGACAAAACCAGGGTAGGTGTTCTGTGTCCC  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAGTTGTGACTCATGACAAAACCAGGGTAGGTGTTCTGTGTCCC  899

seq1  AAGATCTTAGCAGTATGTGTTCCTGGAGTCCCTCCCTAGTA-TTTGCGGA  948
      ||||||||||||||||||||||||||||||||||||||||| ||||| | 
seq2  AAGATCTTAGCAGTATGTGTTCCTGGAGTCCCTCCCTAGTATTTTGCCGG  949

seq1  ATTTCAACCCCACAGTGTGGT-CATCCTGTC-ACCTGCTG-TGACTGATG  995
      | |||| |||||||||||||| ||||||||| |||||||| |||||||||
seq2  AATTCACCCCCACAGTGTGGTCCATCCTGTCAACCTGCTGTTGACTGATG  999

seq1  -TGACTC--TGGTGTTG--AGAAGACCAAAGGTCTATTA--GTCTTCTTT  1038
       ||||||   |||||||  |||  || ||||| ||||||  ||| |||||
seq2  TTGACTCCTGGGTGTTGAAAGATAACTAAAGGGCTATTAAGGTC-TCTTT  1048

seq1  C-TTTGGA-GGCTG-CCACATCTG-TTCCCATGCA-ATCAGGGC-ATTTA  1082
      | |||||| ||||| ||||||||| |||||||| | |||||||| |||||
seq2  CTTTTGGAGGGCTGCCCACATCTGTTTCCCATGGAGATCAGGGCAATTTA  1098

seq1  GTATTGTGAAGG  1094
      ||||||||||||
seq2  GTATTGTGAAGG  1110

seq1: chr19_7568275_7569301
seq2: B6Ng01-165P19.g_69_1100 (reverse)

seq1  CCCTGGCTGT--CCAGGAACTCAC--TTTGTAGACCAGGCTGGCCTCGAA  46
      ||||||||||  | ||||||||||  || ||||||||||||||| |||||
seq2  CCCTGGCTGTTCCAAGGAACTCACCTTTGGTAGACCAGGCTGGCTTCGAA  50

seq1  CTCAGAAATCCTCCTGCCTCTGCCT-CCCAAGTGCTGGGATT-AAAGGCG  94
      |||||||||||||||| |||||||| |||||||||||||||| |||||||
seq2  CTCAGAAATCCTCCTG-CTCTGCCTCCCCAAGTGCTGGGATTAAAAGGCG  99

seq1  TGCGCCACCACGACCGGCGTTACTTTAGCTTTTAGTAAGCCTTGGTCAGA  144
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCGCCACCACGACCGGCGTTACTTTAGC-TTTAGTAAGCCTTGGTCAGA  148

seq1  TCAGAGATTAGGGGTGATGGTGATGATAATGAAGTCACGATGGTCTGTCC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATTAGGGGTGATGGTGATGATAATGAAGTCACGATGGTCTGTCC  198

seq1  TTGTGAAGTCAAAGTCGAAGCGTTCGCGTCATCATGTT-AATTCTTTCAT  243
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGTGAAGTCAAAGTCGAAGCGTTCGCGTCATCATGTTAAATTCTTTCAT  248

seq1  ACCACCACCTGTAGTCCTGGCCAGCGAGGAACACCAGAGCCCAGCACGCG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCTGTAGTCCTGGCCAGCGAGGAACACCAGAGCCCAGCACGCG  298

seq1  GGCCGGGTGGGGGCTCCCGGCGGGAACCGGGTGGCCAAAGCCCGGCCCTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGTGGGGGCTCCCGGCGGGAACCGGGTGGCCAAAGCCCGGCCCTG  348

seq1  GTCCCCGGGTTAGGCGCCGGGCAGGGTCTTCCGAGAGCCCTCCTCATTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGGGTTAGGCGCCGGGCAGGGTCTTCCGAGAGCCCTCCTCATTTT  398

seq1  TTTCCCTTTGCAAGGCCTAATGGGAGTTGTAGTTCAGCGGTAGGAAGACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTGCAAGGCCTAATGGGAGTTGTAGTTCAGCGGTAGGAAGACC  448

seq1  CACTCGGCCCAGTCCTGTCCTCCGTTTCCTCTACGCCCCGGATGAGGGCG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGCCCAGTCCTGTCCTCCGTTTCCTCTACGCCCCGGATGAGGGCG  498

seq1  AACACCCGGGTCAGAGGGGCCGGGCCCAAGAAAACGCCGAACTACAATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCGGGTCAGAGGGGCCGGGCCCAAGAAAACGCCGAACTACAATTC  548

seq1  CCGATGGACCCGACATTCCAGTACGCAGTCACAGGTACCCGCGGCACGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGACCCGACATTCCAGTACGCAGTCACAGGTACCCGCGGCACGAT  598

seq1  CCCCGCTCCGGCGCACGCGCACCGAACGGTGGCGGGACTCGGCCGCGTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTCCGGCGCACGCGCACCGAACGGTGGCGGGACTCGGCCGCGTGC  648

seq1  GCTTTCCCGCCCTCGTCACGCCCTGCGCCATCGGCAGGGCTGTCTCCTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCGCCCTCGTCACGCCCTGCGCCATCGGCAGGGCTGTCTCCTGA  698

seq1  GCTGTAGGCTTTCTCCGCGCGCCCCTCCTTCTCGGTTTCTCCCCAAGTCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGCTTTCTCCGCGCGCCCCTCCTTCTCGGTTTCTCCCCAAGTCC  748

seq1  AGGCTCCGCCTGTTTCCCTCCTCCAGGGCAGCCTCAACCCGCTCCTGTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCGCCTGTTTCCCTCCTCCAGGGCAGCCTCAACCCGCTCCTGTCT  798

seq1  TCTCTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCT  848

seq1  CAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAGGTGAGGCGTCCAATTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAGGTGAGGCGTCCAATTT  898

seq1  TCCCGGGACCCGGTCCGTGGTTACCCACGCTGCCTCCCAGTGCTTCGGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGACCCGGTCCGTGGTTACCCACGCTGCCTCCCAGTGCTTCGGCT  948

seq1  CCGAGGTGACAAGCCGTCCCTGCCGCCGCCTTTTTTGGTGTGGCGACGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTGACAAGCCGTCCCTGCCGCCGCCTTTTTTGGTGTGGCGACGGG  998

seq1  AGGCCGCACCGCCGGGTGTCTCGGCTCGGAATTC  1027
      ||||||||||||||||||||||||||||||||||
seq2  AGGCCGCACCGCCGGGTGTCTCGGCTCGGAATTC  1032