BAC Information

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BAC

Clone NameB6Ng01-166E19
Chromosome19 (Build37)
Map Location 46,047,439 - 46,225,341
singlet/doubletdoublet
Overlap gene9130011E15Rik, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3
Upstream gene6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, EG627939
Downstream geneGbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E19.bB6Ng01-166E19.g
ACCDH958117DH958118
length1,0891,171
definitionDH958117|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E19, 5' end.DH958118|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,224,241 - 46,225,341)(46,047,439 - 46,048,636)
sequence
gaattcactttgtagaccaggctggcctcgaactcaggtctgtctgcctg
cctctgcctctcaagtgctgggattaaagtcatatgctaccatgtccagc
aaagcaaaccttttctaaggccattggaatgtggccttgaaacaggcacc
caaggcatccataggttatgatcctctaatttaaaaaaccatcagagcca
aatccaatatgaagaatcccccaacaactccctgtgtctatgcattggtc
ttggtctctaggtccagctaggaacctaaaggaagtcagatgaagatgat
acgatcaccaaggtatttcattctatgatacctctgagccatttttctct
tcgtttggtctttagggcttctctcaggttggagagcaaataggaaaacc
ctgtaagtaaactaaaactccctactctcccctccctatctaggtatgcc
tccagacattagacatcttagaagtatgtgattatcaattaaagatggag
agagagacagagagaaagcaatccccagcccctcacaggtgctacacatc
atttaacagataaaacaggttttttttttatttatttcagtgcaacattt
attgagtttctttttccttctctctccagcccctttcgctccagcccaga
gatttatttatttattatatgtaagtacactgtagctgtcttcagacaca
ccagaatcagagggcatcagatcccattacagatggttgtgacccaccat
gtggttgctgggatttgaactcaggacctctggaagagcagtcagtgcgc
ttaaccgctgagccatctctccagccccccatttattgagtttctatatg
cctgtgaatagaaaaagaggaaagaaatgcttcttgttctcctaaattta
ttttatacaagtcaacacatcagttgattccttcaatatggaggatggag
tgatatcaatctataataaagggtcatgagagcagaagctacacctttgg
ccagcctggagttcaggcaggcttctcgataaaacgaactaatgggactc
agaaatagatagcaatataaccgaccggtttttgtgttg
gaattctttctagagaagaagtctccacactaggggtacactaagtctgt
agcctcccactgcaactacagaactacgtcttgactagccaagccttcaa
tttctgttactctgaatttgaaaacagcttgagtgttaacatataaaacc
cacaaaattaataaacaacagcacacctgtaatcccagcactgaagagat
ggaggaagaacaatcagtagttcaaggtgagggtcagagagctagctgag
cagataaaggcacttgctgccaagtctgacaaaagaaccaactctcacaa
gctggtctctgactccacagatgcttgtgacatgaacatgcatacgaata
tacatacaaacacacattcatgagtgtacacatacacaagagggttgcct
gggttttctggccactaacctaactaaaacacagtgagctatagctgggt
gaccctatatctggggaataaggcagacagtaatagacataccacttcca
tctctgaagggaaaaaagtgaggagctggagaaatggttcagatggcaaa
gggcttgccctacaagcctggtgacccgacctgcttgatacctggaacca
ggtacaagtggaagcaaagaagcaatcatcacacagcctctaggagcact
gtggcatgaccactccccatacacactatacaaggtaaatacagtttttg
ttatttttgcttactttgagacaggatctcactacatagatgtggctggc
ctaaaactccctatataaatcaacctagtgccgggcagtggtggcgtaca
cctttaatcccagcacctggggaggcagaagcaggtggatttctaagttc
aagaccagcctggtctaccaaataagttccacgacagcagggctacacag
agaaaccctgtctcgaaagaaaaaaaaaaaaaaacaaaacatcctagctt
caactcacaaaagtcccctgcctctgcttccaaagtactgggataagggt
acccacaataaatttgtttagagatatcttttagctacatgaagatgttg
cctacatgtgtgtctatgaaccactatgtaagaagaaaggacgtgatcct
ctggactggaatatacaaaagcttcagcagcaagtactgctgaactgacc
cagtcctttaagagcacaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46224241_46225341
seq2: B6Ng01-166E19.b_48_1136 (reverse)

seq1  CAACAACAAAAACAGTC-GTTATATTGCTGATCCTAATTTCTGAGTTCCA  49
      |||||  |||| | ||| ||||||||||| |||   |||||||||| |||
seq2  CAACACAAAAACCGGTCGGTTATATTGCT-ATC--TATTTCTGAGTCCCA  47

seq1  CTTAGGTTCTGTTTTATCTGAGAAGCCTTGCCTGAACTTCCAGGCTGGCC  99
       ||| |||| |||||||| |||||||| ||||||||| ||||||||||||
seq2  -TTA-GTTC-GTTTTATC-GAGAAGCC-TGCCTGAAC-TCCAGGCTGGCC  91

seq1  AAAGGTGTAGCTTCTTGCTCTCATGACCCCTTATGTATAGATTTGATATC  149
      |||||||||||||| |||||||||||||| |||| |||||| ||||||||
seq2  AAAGGTGTAGCTTC-TGCTCTCATGACCCTTTAT-TATAGA-TTGATATC  138

seq1  ACTCCATCCTCCATATTGAAGGAATCAACTGATGTGTTGACTTGTATAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCCTCCATATTGAAGGAATCAACTGATGTGTTGACTTGTATAAA  188

seq1  ATAAAATTTAGGAGAACAAGAAGCATTTCTTTCCTCTTTTTCTATTCACA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAATTTAGGAGAACAAGAAGCATTTCTTTCCTCTTTTTCTATTCACA  237

seq1  GGCATATAGAAACTCAATAAATGGGGGGCTGGAGAGATGGCTCAGCGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAGAAACTCAATAAATGGGGGGCTGGAGAGATGGCTCAGCGGTT  287

seq1  AAGCGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACC  337

seq1  ACATGGTGGGTCACAACCATCTGTAATGGGATCTGATGCCCTCTGATTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGGTCACAACCATCTGTAATGGGATCTGATGCCCTCTGATTCT  387

seq1  GGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAA  437

seq1  TCTCTGGGCTGGAGCGAAAGGGGCTGGAGAGAGAAGGAAAAAGAAACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTGGAGCGAAAGGGGCTGGAGAGAGAAGGAAAAAGAAACTCA  487

seq1  ATAAATGTTGCACTGAAATAAATAAAAAAAAAACCTGTTTTATCTGTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTGCACTGAAATAAATAAAAAAAAAACCTGTTTTATCTGTTAA  537

seq1  ATGATGTGTAGCACCTGTGAGGGGCTGGGGATTGCTTTCTCTCTGTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTAGCACCTGTGAGGGGCTGGGGATTGCTTTCTCTCTGTCTCT  587

seq1  CTCTCCATCTTTAATTGATAATCACATACTTCTAAGATGTCTAATGTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATCTTTAATTGATAATCACATACTTCTAAGATGTCTAATGTCTG  637

seq1  GAGGCATACCTAGATAGGGAGGGGAGAGTAGGGAGTTTTAGTTTACTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATACCTAGATAGGGAGGGGAGAGTAGGGAGTTTTAGTTTACTTAC  687

seq1  AGGGTTTTCCTATTTGCTCTCCAACCTGAGAGAAGCCCTAAAGACCAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTCCTATTTGCTCTCCAACCTGAGAGAAGCCCTAAAGACCAAAC  737

seq1  GAAGAGAAAAATGGCTCAGAGGTATCATAGAATGAAATACCTTGGTGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAATGGCTCAGAGGTATCATAGAATGAAATACCTTGGTGATC  787

seq1  GTATCATCTTCATCTGACTTCCTTTAGGTTCCTAGCTGGACCTAGAGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCTTCATCTGACTTCCTTTAGGTTCCTAGCTGGACCTAGAGACC  837

seq1  AAGACCAATGCATAGACACAGGGAGTTGTTGGGGGATTCTTCATATTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAATGCATAGACACAGGGAGTTGTTGGGGGATTCTTCATATTGGA  887

seq1  TTTGGCTCTGATGGTTTTTTAAATTAGAGGATCATAACCTATGGATGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTGATGGTTTTTTAAATTAGAGGATCATAACCTATGGATGCCT  937

seq1  TGGGTGCCTGTTTCAAGGCCACATTCCAATGGCCTTAGAAAAGGTTTGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCTGTTTCAAGGCCACATTCCAATGGCCTTAGAAAAGGTTTGCT  987

seq1  TTGCTGGACATGGTAGCATATGACTTTAATCCCAGCACTTGAGAGGCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGACATGGTAGCATATGACTTTAATCCCAGCACTTGAGAGGCAGA  1037

seq1  GGCAGGCAGACAGACCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGACAGACCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAAT  1087

seq1  TC  1101
      ||
seq2  TC  1089

seq1: chr19_46047439_46048636
seq2: B6Ng01-166E19.g_66_1236

seq1  GAATTCTTTCTAGAGAAGAAGTCTCCACACTAGGGGTACACTAAGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAGAGAAGAAGTCTCCACACTAGGGGTACACTAAGTCTGT  50

seq1  AGCCTCCCACTGCAACTACAGAACTACGTCTTGACTAGCCAAGCCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCCACTGCAACTACAGAACTACGTCTTGACTAGCCAAGCCTTCAA  100

seq1  TTTCTGTTACTCTGAATTTGAAAACAGCTTGAGTGTTAACATATAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTACTCTGAATTTGAAAACAGCTTGAGTGTTAACATATAAAACC  150

seq1  CACAAAATTAATAAACAACAGCACACCTGTAATCCCAGCACTGAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATTAATAAACAACAGCACACCTGTAATCCCAGCACTGAAGAGAT  200

seq1  GGAGGAAGAACAATCAGTAGTTCAAGGTGAGGGTCAGAGAGCTAGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGAACAATCAGTAGTTCAAGGTGAGGGTCAGAGAGCTAGCTGAG  250

seq1  CAGATAAAGGCACTTGCTGCCAAGTCTGACAAAAGAACCAACTCTCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAGGCACTTGCTGCCAAGTCTGACAAAAGAACCAACTCTCACAA  300

seq1  GCTGGTCTCTGACTCCACAGATGCTTGTGACATGAACATGCATACGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTCTGACTCCACAGATGCTTGTGACATGAACATGCATACGAATA  350

seq1  TACATACAAACACACATTCATGAGTGTACACATACACAAGAGGGTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAAACACACATTCATGAGTGTACACATACACAAGAGGGTTGCCT  400

seq1  GGGTTTTCTGGCCACTAACCTAACTAAAACACAGTGAGCTATAGCTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCTGGCCACTAACCTAACTAAAACACAGTGAGCTATAGCTGGGT  450

seq1  GACCCTATATCTGGGGAATAAGGCAGACAGTAATAGACATACCACTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATATCTGGGGAATAAGGCAGACAGTAATAGACATACCACTTCCA  500

seq1  TCTCTGAAGGGAAAAAAGTGAGGAGCTGGAGAAATGGTTCAGATGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGGGAAAAAAGTGAGGAGCTGGAGAAATGGTTCAGATGGCAAA  550

seq1  GGGCTTGCCCTACAAGCCTGGTGACCCGACCTGCTTGATACCTGGAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCCCTACAAGCCTGGTGACCCGACCTGCTTGATACCTGGAACCA  600

seq1  GGTACAAGTGGAAGCAAAGAAGCAATCATCACACAGCCTCTAGGAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGTGGAAGCAAAGAAGCAATCATCACACAGCCTCTAGGAGCACT  650

seq1  GTGGCATGACCACTCCCCATACACACTATACAAGGTAAATACAGTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGACCACTCCCCATACACACTATACAAGGTAAATACAGTTTTTG  700

seq1  TTATTTTTGCTTACTTTGAGACAGGATCTCACTACATAGATGTGGCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGCTTACTTTGAGACAGGATCTCACTACATAGATGTGGCTGGC  750

seq1  CTAAAACTCCCTATATAAATCAACCTAGTGCCGGGCAGTGGTGGCGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCCCTATATAAATCAACCTAGTGCCGGGCAGTGGTGGCGTACA  800

seq1  CCTTTAATCCCAGCACCTGGGGAGGCAGAAGCAGGTGGATTTCTAAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACCTGGGGAGGCAGAAGCAGGTGGATTTCTAAGTTC  850

seq1  AAGACCAGCCTGGTCTACCAAATAAGTTCCACGACAGCAGGGCTACACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGCCTGGTCTACCAAATAAGTTCCACGACAGCAGGGCTACACAG  900

seq1  AGAAACCCTGTCTCGAAAGAAAAAAAAAAAAAAACAAAACATCCTAGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCGAAAGAAAAAAAAAAAAAAACAAAACATCCTAGCTT  950

seq1  CCAACTCACAAAAGTCCCCCTGCCTCTGCCTCCCAAGTACTGGGATTAAA  1000
       |||||||||||||| ||||||||||||| ||| ||||||||||||   |
seq2  -CAACTCACAAAAGT-CCCCTGCCTCTGCTTCCAAAGTACTGGGAT---A  995

seq1  GGGGTACCCACAATAAAATTTGTTTAGAGATTTATCTTTTAGCTTACATG  1050
       ||||||||||||| |||||||||||||||  ||||||||||| ||||||
seq2  AGGGTACCCACAAT-AAATTTGTTTAGAGA--TATCTTTTAGC-TACATG  1041

seq1  TATGGATGTTTGCCTACATGTGTGTCTATGAAACCACTATGTAAGAAGAA  1100
       |  |||| ||||||||||||||||||||| ||||||||||||||||| |
seq2  AA--GATG-TTGCCTACATGTGTGTCTATG-AACCACTATGTAAGAAG-A  1086

seq1  AAGGACGTTGGATCCTCTGGAACTGGAAT-TACAAACAGCTGTCAGCAGC  1149
      ||||||||  |||||||||| |||||||| |||||| |||| ||||||| 
seq2  AAGGACGT--GATCCTCTGG-ACTGGAATATACAAA-AGCT-TCAGCAG-  1130

seq1  CATGTAACTGCTGGGAACTGAACCCAGGTCCTCTATAAGAGCAACAAGT  1198
      || || ||||||  |||||| ||||| |||  || ||||||| ||||||
seq2  CAAGT-ACTGCT--GAACTG-ACCCA-GTC--CTTTAAGAGC-ACAAGT  1171