BAC Information

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BAC

Clone NameB6Ng01-166F05
Chromosome19 (Build37)4 (Build37)
Map Location 26,129,581 - 26,130,73642,621,555 - 42,621,594
singlet/doubletsingletsinglet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166F05.bB6Ng01-166F05.g
ACCDH958137DH958138
length1,137437
definitionDH958137|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F05, 5' end.DH958138|Mus musculus domesticus DNA, BAC clone: B6Ng01-166F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,129,581 - 26,130,736)(42,621,555 - 42,621,594)
sequence
gaattcccttcctctgcactaatatatccaggattcctactaactacttc
tgtggcactttttgggtcaataaattaccagcaggctccattcactttct
gtataatatatagcgtctcagattatcccaaatctaccatttattcaaaa
agtcacgtctaatacaagtaaagatgtttggacctgaaaaatgtcctatc
catcgtggatggccttaaagttaactaacctaaaaatggttcaaatgtct
cctgtgtatgcccaaaggtgatcacagacagccacaaggccaataaatga
aagtcacaggaagggagattttcactttaaaacaagaagaggctctctat
aagctaaaggttttactagaccaggaatcaaaaggctttcaatcaagggt
cttgggttagctttcctcatcactgtgagcaagttctgataaggagtaac
ttaagagagaaagactcttattttggagctctggtacattcaatggtagt
aggagctcattagctattccacccctacagtctgtcacctagacccttat
tcaaaaggtttaacaaccttccataacaagccacagcatgttaaaacaca
tgaacctggtctgaaacatttcacatttaaatggtaacaggtctagacca
gatatactgtagtatttgtaggccatgccatctctgtggtaaccatgaac
tccacttctatagcagaaaagcagccttagttgatacataaacaaatgtg
catagctttgttccatcaaaacttgcatagtttgcccattcctggaacag
gccaaacaaaacaaaatggcagttcacaaatgccatctccttgccccaga
caggcttccaatgtgttttaaaacagagaggatttttactaaaagtacag
acgcctagcttccattgggtaacccagggcccacattcctgtatgtcagc
aaatgtcaacaattgtctggagttgagtaatggctgcccactttggaggg
gcagaggctctgcagccaccaaatgcccaccacagactgctctgtctgat
ctgggtttaataccagtacattagcagactagctatttttcccttgtggt
agagttatttctctactgcatctattcaagtggagta
ctactgttgtgggaaatattaaaaaaatgtaccatcctgcgctataccaa
actactctcaggccttggtgaccctgctgcatccatggctagccccatgc
agtgaccgatcctggttctcttgtggcagattctgctcacaatcccagcc
atccaccccctttggtcagcagtcccaaatcccagtaactaggtaaaatc
aaaactctagaggcttgtaatttataagtcagatttatatctcaccccac
aaaacatccacataatttactcagagccaattgatattgatataaattgc
ccacctagataagacaaattgtcctgtaattatctgttccttatatgata
ttcatagctacctgtgactatttggacaatgtggagtctggatcatcttt
ctcttccttccttccttccttccttctctccttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26129581_26130736
seq2: B6Ng01-166F05.b_47_1183 (reverse)

seq1  TACTCCACTTGATATAGATGCAGGTTTAGAGAAATAACTTCCTACCACAA  50
      |||||||||||| ||||||||||   |||||||||||||  |||||||||
seq2  TACTCCACTTGA-ATAGATGCAG---TAGAGAAATAACT--CTACCACAA  44

seq1  GGGGAAAAAATAGGCTAGTCTGCTAAATGGTACCTGGTATAAAACCCAGA  100
      |||  ||||||| |||||||||||||   ||| ||||||| |||||||| 
seq2  GGG--AAAAATA-GCTAGTCTGCTAA--TGTA-CTGGTATTAAACCCAG-  87

seq1  ATCAGACAGGAAGCAGGTCTGTGGTGGGGCATTTGGTGGCCTGCAGAGCC  150
      |||||||||  |||| ||||||||| ||||||||||||| ||||||||||
seq2  ATCAGACAG--AGCA-GTCTGTGGT-GGGCATTTGGTGG-CTGCAGAGCC  132

seq1  TCTGCCCCCTCCAAAGTGGGCAGCCATTACTCAACTCCAGACAATTGTTG  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTG-CCCCTCCAAAGTGGGCAGCCATTACTCAACTCCAGACAATTGTTG  181

seq1  ACATTTGCTGACATACAGGAATGTGGGCCCTGGGTTACCCAATGGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCTGACATACAGGAATGTGGGCCCTGGGTTACCCAATGGAAGCT  231

seq1  AGGCGTCTGTACTTTTAGTAAAAATCCTCTCTGTTTTAAAACACATTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTCTGTACTTTTAGTAAAAATCCTCTCTGTTTTAAAACACATTGGA  281

seq1  AGCCTGTCTGGGGCAAGGAGATGGCATTTGTGAACTGCCATTTTGTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTGGGGCAAGGAGATGGCATTTGTGAACTGCCATTTTGTTTTG  331

seq1  TTTGGCCTGTTCCAGGAATGGGCAAACTATGCAAGTTTTGATGGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTGTTCCAGGAATGGGCAAACTATGCAAGTTTTGATGGAACAAA  381

seq1  GCTATGCACATTTGTTTATGTATCAACTAAGGCTGCTTTTCTGCTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCACATTTGTTTATGTATCAACTAAGGCTGCTTTTCTGCTATAGA  431

seq1  AGTGGAGTTCATGGTTACCACAGAGATGGCATGGCCTACAAATACTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTTCATGGTTACCACAGAGATGGCATGGCCTACAAATACTACAG  481

seq1  TATATCTGGTCTAGACCTGTTACCATTTAAATGTGAAATGTTTCAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGGTCTAGACCTGTTACCATTTAAATGTGAAATGTTTCAGACCA  531

seq1  GGTTCATGTGTTTTAACATGCTGTGGCTTGTTATGGAAGGTTGTTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGTGTTTTAACATGCTGTGGCTTGTTATGGAAGGTTGTTAAACC  581

seq1  TTTTGAATAAGGGTCTAGGTGACAGACTGTAGGGGTGGAATAGCTAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATAAGGGTCTAGGTGACAGACTGTAGGGGTGGAATAGCTAATGA  631

seq1  GCTCCTACTACCATTGAATGTACCAGAGCTCCAAAATAAGAGTCTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTACTACCATTGAATGTACCAGAGCTCCAAAATAAGAGTCTTTCTC  681

seq1  TCTTAAGTTACTCCTTATCAGAACTTGCTCACAGTGATGAGGAAAGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTTACTCCTTATCAGAACTTGCTCACAGTGATGAGGAAAGCTAA  731

seq1  CCCAAGACCCTTGATTGAAAGCCTTTTGATTCCTGGTCTAGTAAAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACCCTTGATTGAAAGCCTTTTGATTCCTGGTCTAGTAAAACCTT  781

seq1  TAGCTTATAGAGAGCCTCTTCTTGTTTTAAAGTGAAAATCTCCCTTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATAGAGAGCCTCTTCTTGTTTTAAAGTGAAAATCTCCCTTCCTG  831

seq1  TGACTTTCATTTATTGGCCTTGTGGCTGTCTGTGATCACCTTTGGGCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCATTTATTGGCCTTGTGGCTGTCTGTGATCACCTTTGGGCATA  881

seq1  CACAGGAGACATTTGAACCATTTTTAGGTTAGTTAACTTTAAGGCCATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACATTTGAACCATTTTTAGGTTAGTTAACTTTAAGGCCATCC  931

seq1  ACGATGGATAGGACATTTTTCAGGTCCAAACATCTTTACTTGTATTAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGATAGGACATTTTTCAGGTCCAAACATCTTTACTTGTATTAGAC  981

seq1  GTGACTTTTTGAATAAATGGTAGATTTGGGATAATCTGAGACGCTATATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTTTGAATAAATGGTAGATTTGGGATAATCTGAGACGCTATATA  1031

seq1  TTATACAGAAAGTGAATGGAGCCTGCTGGTAATTTATTGACCCAAAAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGAAAGTGAATGGAGCCTGCTGGTAATTTATTGACCCAAAAAGT  1081

seq1  GCCACAGAAGTAGTTAGTAGGAATCCTGGATATATTAGTGCAGAGGAAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAAGTAGTTAGTAGGAATCCTGGATATATTAGTGCAGAGGAAGG  1131

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1137

seq1: chr4_42621555_42621594
seq2: B6Ng01-166F05.g_475_509 (reverse)

seq1  AAGGAAGAGAAAGAGAGAAGGAAGGAAGGAAGGAAGGAAG  40
      |||||||     ||||||||||||||||||||||||||||
seq2  AAGGAAG-----GAGAGAAGGAAGGAAGGAAGGAAGGAAG  35