BAC Information

Click to search

BAC

Clone NameB6Ng01-166L11
Chromosome19 (Build37)
Map Location 36,202,870 - 36,342,367
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
Downstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L11.bB6Ng01-166L11.g
ACCDH958412DH958413
length7651,075
definitionDH958412|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L11, 5' end.DH958413|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,341,602 - 36,342,367)(36,202,870 - 36,203,956)
sequence
gaattctgtcatagcaaaggaaagcgaagacaacgcccttcatccaaaac
acttaacattttattgctccccccccccccccacattgcttttgttttct
atttctagagtggaagttacttcagggagggactgcattccaattttagg
attacaagcccttactgtagcagtttgcctagagattagacactcagtaa
aggcccgttggatggataagtgtagagtcatctttggaaagcaaagcaga
tatccatgttggattctcttcctccactttatgtggtaagttaagtattt
taaattagcgttccttggattctcttgattgcaaatgccagtgaatttgt
cctctgtaatggatttaaatagccgataaggatcctgagaagctcacaca
gttgaacttgtgagcatccagccattaagacagggttcagagccccagcc
gcctaaggatcaacaacttaccaaccttcttcttagagtagatacagcct
gggctgtcttctgttccattttgtttgcctttagatcttctgcagattgg
cttcttccagcttgttaggtttggtgaccttggccaaccaacctcagcaa
caatgacaacaacaagaacaagcaaacaaataaccgataaatggtgtgtc
cagagtttgagtgttgagaggttttgtgtgtgtgtgtgtgtgtgtgtgtg
tgagcatgtgtgtggttgtggggtatgatgcagatgagcaggctgctacc
aggagtgaaaagaag
gaattcactgttctatgtgactctcaatgtgtggacagtgtttggggaat
ccagaggaggcattcgctcacctggaactgagttttctctttttttgaaa
aaaaaattatttatttattatattttattatatgtaaatatacactgtag
ctgtcttcagacaccccagaagagggcatcagatctcattgcagatggtt
gtgagacaccatgtggttgctgggatttgaactcacgaccttcagaagag
cagtcagtgctgttcaccgctgagccatctctccagccctggaactgagt
tttcaggtggttgtgagccactgtgtgaatgctggaaactgaacccagac
cctctgagagaccagggagcattcttaacaacagagtcatctcttcagcc
caaggaaatagatatattgaaaagcctctaaagtgtgaaaaaaaaattga
ggtgcagtcaccagaggaagtaggagtgacacaatcaactttttttccta
ctatttattttttccttgcccacacccttttattagacagattctcattt
tttagactagggtggctttgaactcaccaacatcaacctgcctctgccat
ggaattaactttctggtacccctgggggatggaattgttattcaccctct
aatagtgactgggttcagaaccttttaactgcccctcccctgcaccctag
gtttgtcatttttttcctctgtagatctgcaagagtgaaatcaggatgat
ttcccacagaaaggagctcgcccaagccttctaaactgaattcccccaag
aaagggaagagcctgtttgtgggcacagactctcctggtgccgggagcag
atcattcagggaggagggggcctgaagccccttagggatctccgctctct
ggagacaaggatctgggtttcacaaaggaatttacagagctgagcaccca
tctcagctgcgcagctgtgttgttatcaggatgaaaaaatgtcctcttca
ccgaaaaggatgcttcgcagaaatgactccaggaacaataccaattgcct
ctccgggagcagttggtttggcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36341602_36342367
seq2: B6Ng01-166L11.b_46_810 (reverse)

seq1  CTTCTTTCTCACTCCTGGTAGCAGCCTTGCTCCTCTGCATCATA-CCCAC  49
      ||||||| |||||||||||||||||| ||||| ||||||||||| |||||
seq2  CTTCTTT-TCACTCCTGGTAGCAGCC-TGCTCATCTGCATCATACCCCAC  48

seq1  AACCACACACATGCTCACACACACACACACACACACACACACAAAACCTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACATGCTCACACACACACACACACACACACACACAAAACCTC  98

seq1  TCAACACTCAAACTCTGGACACACCATTTATCGGTTATTTGTTTGCTTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTCAAACTCTGGACACACCATTTATCGGTTATTTGTTTGCTTGT  148

seq1  TCTTGTTGTTGTCATTGTTGCTGAGGTTGGTTGGCCAAGGTCACCAAACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGTTGTCATTGTTGCTGAGGTTGGTTGGCCAAGGTCACCAAACC  198

seq1  TAACAAGCTGGAAGAAGCCAATCTGCAGAAGATCTAAAGGCAAACAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGCTGGAAGAAGCCAATCTGCAGAAGATCTAAAGGCAAACAAAAT  248

seq1  GGAACAGAAGACAGCCCAGGCTGTATCTACTCTAAGAAGAAGGTTGGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAAGACAGCCCAGGCTGTATCTACTCTAAGAAGAAGGTTGGTAA  298

seq1  GTTGTTGATCCTTAGGCGGCTGGGGCTCTGAACCCTGTCTTAATGGCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGATCCTTAGGCGGCTGGGGCTCTGAACCCTGTCTTAATGGCTGG  348

seq1  ATGCTCACAAGTTCAACTGTGTGAGCTTCTCAGGATCCTTATCGGCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAAGTTCAACTGTGTGAGCTTCTCAGGATCCTTATCGGCTATT  398

seq1  TAAATCCATTACAGAGGACAAATTCACTGGCATTTGCAATCAAGAGAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATTACAGAGGACAAATTCACTGGCATTTGCAATCAAGAGAATC  448

seq1  CAAGGAACGCTAATTTAAAATACTTAACTTACCACATAAAGTGGAGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACGCTAATTTAAAATACTTAACTTACCACATAAAGTGGAGGAAG  498

seq1  AGAATCCAACATGGATATCTGCTTTGCTTTCCAAAGATGACTCTACACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCAACATGGATATCTGCTTTGCTTTCCAAAGATGACTCTACACTT  548

seq1  ATCCATCCAACGGGCCTTTACTGAGTGTCTAATCTCTAGGCAAACTGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCAACGGGCCTTTACTGAGTGTCTAATCTCTAGGCAAACTGCTA  598

seq1  CAGTAAGGGCTTGTAATCCTAAAATTGGAATGCAGTCCCTCCCTGAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGGCTTGTAATCCTAAAATTGGAATGCAGTCCCTCCCTGAAGTA  648

seq1  ACTTCCACTCTAGAAATAGAAAACAAAAGCAATGTGGGGGGGGGGGGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACTCTAGAAATAGAAAACAAAAGCAATGTGGGGGGGGGGGGGGA  698

seq1  GCAATAAAATGTTAAGTGTTTTGGATGAAGGGCGTTGTCTTCGCTTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAATGTTAAGTGTTTTGGATGAAGGGCGTTGTCTTCGCTTTCCT  748

seq1  TTGCTATGACAGAATTC  766
      |||||||||||||||||
seq2  TTGCTATGACAGAATTC  765

seq1: chr19_36202870_36203956
seq2: B6Ng01-166L11.g_69_1143

seq1  GAATTCACTGTTCTATGTGACTCTCAATGTGTGGACAGTGTTTGGGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTCTATGTGACTCTCAATGTGTGGACAGTGTTTGGGGAAT  50

seq1  CCAGAGGAGGCATTCGCTCACCTGGAACTGAGTTTTCTCTTTTTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAGGCATTCGCTCACCTGGAACTGAGTTTTCTCTTTTTTTGAAA  100

seq1  AAAAAATTATTTATTTATTATATTTTATTATATGTAAATATACACTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATTTATTTATTATATTTTATTATATGTAAATATACACTGTAG  150

seq1  CTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTGCAGATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTGCAGATGGTT  200

seq1  GTGAGACACCATGTGGTTGCTGGGATTTGAACTCACGACCTTCAGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACACCATGTGGTTGCTGGGATTTGAACTCACGACCTTCAGAAGAG  250

seq1  CAGTCAGTGCTGTTCACCGCTGAGCCATCTCTCCAGCCCTGGAACTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGCTGTTCACCGCTGAGCCATCTCTCCAGCCCTGGAACTGAGT  300

seq1  TTTCAGGTGGTTGTGAGCCACTGTGTGAATGCTGGAAACTGAACCCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTGGTTGTGAGCCACTGTGTGAATGCTGGAAACTGAACCCAGAC  350

seq1  CCTCTGAGAGACCAGGGAGCATTCTTAACAACAGAGTCATCTCTTCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGAGACCAGGGAGCATTCTTAACAACAGAGTCATCTCTTCAGCC  400

seq1  CAAGGAAATAGATATATTGAAAAGCCTCTAAAGTGTGAAAAAAAAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATAGATATATTGAAAAGCCTCTAAAGTGTGAAAAAAAAATTGA  450

seq1  GGTGCAGTCACCAGAGGAAGTAGGAGTGACACAATCAACTTTTTTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGTCACCAGAGGAAGTAGGAGTGACACAATCAACTTTTTTTCCTA  500

seq1  CTATTTATTTTTTCCTTGCCCACACCCTTTTATTAGACAGATTCTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTTTTTCCTTGCCCACACCCTTTTATTAGACAGATTCTCATTT  550

seq1  TTTAGACTAGGGTGGCTTTGAACTCACCAACATCAACCTGCCTCTGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTAGGGTGGCTTTGAACTCACCAACATCAACCTGCCTCTGCCAT  600

seq1  GGAATTAACTTTCTGGTACCCCTGGGGGATGGAATTGTTATTCACCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAACTTTCTGGTACCCCTGGGGGATGGAATTGTTATTCACCCTCT  650

seq1  AATAGTGACTGGGTTCAGAACCTTTTAACTGCCCCTCCCCTGCACCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGACTGGGTTCAGAACCTTTTAACTGCCCCTCCCCTGCACCCTAG  700

seq1  GTTTGTCATTTTTTTCCTCTGTAGATCTGCAAGAGTGAAATCAGGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCATTTTTTTCCTCTGTAGATCTGCAAGAGTGAAATCAGGATGAT  750

seq1  TTCCCACAG-AAGGAGCTCGCCCAAGCCTTCTAAACTGAATTCCCCCAAG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGAAAGGAGCTCGCCCAAGCCTTCTAAACTGAATTCCCCCAAG  800

seq1  AAAGGGAAGAGCCTGTTTGTGGGCACAGACTCTCCTGGTGCCGGGAGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGAGCCTGTTTGTGGGCACAGACTCTCCTGGTGCCGGGAGCAG  850

seq1  ATCATTCAGGGAGGAGGGGGCCTGAAGCCCCTTAGGGATCTCCGCTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCAGGGAGGAGGGGGCCTGAAGCCCCTTAGGGATCTCCGCTCTCT  900

seq1  GGAGACAAGGATCTTGGGTTTCACAAAGGAATTTACAGAGCTGAGCACCC  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAGGATC-TGGGTTTCACAAAGGAATTTACAGAGCTGAGCACCC  949

seq1  ATCTCAGCTGGCGCAGGCTGTGGTTGTTTATCAGGGATGAAAAAAATGTC  999
      ||||||||| ||||| ||||| |||| |||||| ||||| ||||||||||
seq2  ATCTCAGCT-GCGCA-GCTGT-GTTG-TTATCA-GGATG-AAAAAATGTC  993

seq1  CTC-TCACCGAAAAGGAATGCTTCGCAAGGAAATGACTCCAGGGAACATT  1048
      ||| |||||||||||| ||||||||||  |||||||||||| |||||| |
seq2  CTCTTCACCGAAAAGG-ATGCTTCGCA--GAAATGACTCCA-GGAACAAT  1039

seq1  ACCAAATGGCTCCCCGGGGAGCCAGTTTGGTTTGGCAAC  1087
      ||||| || ||| || ||||| ||| |||||||||||||
seq2  ACCAATTGCCTCTCC-GGGAG-CAG-TTGGTTTGGCAAC  1075