BAC Information

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BAC

Clone NameB6Ng01-167M01
Chromosome19 (Build37)
Map Location 22,275,542 - 22,408,081
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167M01.bB6Ng01-167M01.g
ACCDH959165DH959166
length1,184927
definitionDH959165|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M01, 5' end.DH959166|Mus musculus domesticus DNA, BAC clone: B6Ng01-167M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,275,542 - 22,277,009)(22,407,155 - 22,408,081)
sequence
gaattccaaattctattctgtaaatctaaactacagggacaaagctaaaa
actaaattgtatggttaacacaagaaaatggagaatactttcaagttgca
gaaattatgctgaaatgtagatatattttacttttaatctcagtttcact
gctttgtgagtagattttccacattttcttttctcttcacttgttatata
attagaacttaatgtaagttgcattatcagttttgtacccaggtgtatcc
attatccccatggtgcctaaggaagagagtgaattcgtccattctcagta
aaggtcaaagcttcttatggtagacaatgttgtcagtataaatgcatttc
tgttcagtctcaataagatggagacactgtaagggtccacaattcactga
agaatgccatcctggactcaaataatatgtaaacaaaaagagtgttttat
tctgcagaagtccagcatgctggggtctcctattaccaagatagagagat
acccaagagagcttgcaggcctgatttgaagcacattattggattctggg
gtagatgagctctgtgttaatctgttttgtccatctctatggacatccat
cctattaccggagtgtggaggctggaaacttgctggggaggtctggagac
cgttactgaggaagtagctgaggaagtctcaaactgctgctgacccattg
tcgttgccttgggccaggtgccagggcagcttctgaggcctggacttgtc
tggaactgcccagttcttggaaacagagatttaggcctagtctctttaaa
ggccaatttgaagcctgccgtggagtgagccttctcagctcttgctatta
taccagtcaggaaaggaaagggttaatacatccttttaaacttgttataa
ataatagattggatgaattacttgagttatatatcaatttacttgtgatc
atcaacacaatatgtagattgaaatcttattagagatttcacattcatca
gctgcagaaaatatttttcaaactgcaatggtggttttaaatgtagtaca
tcctatgtgatcttctatctaaatctgaaataaggtaattctgttcgtct
tctagaatcgcggtctcacctgtggttactctgggagttcaatgaccctc
agctgctagaccatgcaagcatgtattttattaa
gaattcccactcttgagaatgctctgaaaaggaaatgagaccatagtagg
gacccttttaagggacatgatatttaagctttaatatgaagcaagagaag
aagctagcggattagaaaggtaagaaccagaaaccaatggagaggagact
gtgtgtgatggtttgtatatccttggaccagggagtggcaccatctgaag
gtgtggccttgttggaataggtgtgacctggttggaatgggtgtgtcact
gtgggtgtgggtataagatcctcaccctagttgcctggaagtaagtcttc
cactagcagcctttggatgaagacatagaactctcagctcctcctgagcc
acgcctgcctggatactgccatgctctcaccttgataatggactgaacct
ctgaacctgtaagccaacaccaattaaatgttgttttttataagacttgc
cttggtcatggtatctgttcacagtagtaaaaccctaactaagacactgt
gtaagtaaaactactgacatggggagcaaagataaggaactgggggcaca
gaaagaggcaacgagggagaacaaaatgagtgctatctgggtctgcttct
tcctcctgggagccaggtccattgtgtactaggttggactggaggaagaa
cagccaggtgcaagtgggtgcatgcaggaaacatgcagaaaacacacagc
ctaggacacctgagaactggttcagtttattgggagtgtgggggagaaag
caagtatttatgcctctggggaggtggccagggtctctagggcaaggttt
gtatggctgggtaccattgccaggacaggggtgttggaagaggcttcgtc
tgtgtactcaggaggctggggaggggacctttattaggagtgaagctggt
aggtagctgtctggataattcttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22275542_22277009
seq2: B6Ng01-167M01.b_45_1228

seq1  GAATTCCAAATTCTATTCTGTAAATCTAAACTACAGGGACAAAGCTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTCTATTCTGTAAATCTAAACTACAGGGACAAAGCTAAAA  50

seq1  ACTAAATTGTATGGTTAACACAAGAAAATGGAGAATACTTTCAAGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTGTATGGTTAACACAAGAAAATGGAGAATACTTTCAAGTTGCA  100

seq1  GAAATTATGCTGAAATGTAGATATATTTTACTTTTAATCTCAGTTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATGCTGAAATGTAGATATATTTTACTTTTAATCTCAGTTTCACT  150

seq1  GCTTTGTGAGTAGATTTTCCACATTTTCTTTTCTCTTCACTTGTTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAGTAGATTTTCCACATTTTCTTTTCTCTTCACTTGTTATATA  200

seq1  ATTAGAACTTAATGTAAGTTGCATTATCAGTTTTGTACCCAGGTGTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACTTAATGTAAGTTGCATTATCAGTTTTGTACCCAGGTGTATCC  250

seq1  ATTATCCCCATGGTGCCTAAGGAAGAGAGTGAATTCGTCCATTCTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCCATGGTGCCTAAGGAAGAGAGTGAATTCGTCCATTCTCAGTA  300

seq1  AAGGTCAAAGCTTCTTATGGTAGACAATGTTGTCAGTATAAATGCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAAGCTTCTTATGGTAGACAATGTTGTCAGTATAAATGCATTTC  350

seq1  TGTTCAGTCTCAATAAGATGGAGACACTGTAAGGGTCCACAATTCACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTCTCAATAAGATGGAGACACTGTAAGGGTCCACAATTCACTGA  400

seq1  AGAATGCCATCCTGGACTCAAATAATATGTAAACAAAAAGAGTGTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCATCCTGGACTCAAATAATATGTAAACAAAAAGAGTGTTTTAT  450

seq1  TCTGCAGAAGTCCAGCATGCTGGGGTCTCCTATTACCAAGATAGAGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAAGTCCAGCATGCTGGGGTCTCCTATTACCAAGATAGAGAGAT  500

seq1  ACCCAAGAGAGCTTGCAGGCCTGATTTGAAGCACATTATTGGATTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAGAGCTTGCAGGCCTGATTTGAAGCACATTATTGGATTCTGGG  550

seq1  GTAGATGAGCTCTGTGTTAATCTGTTTTGTCCATCTCTATGGACATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGAGCTCTGTGTTAATCTGTTTTGTCCATCTCTATGGACATCCAT  600

seq1  CCTATTACCGGAGTGTGGAGGCTGGAAACTTGCTGGGGAGGTCTGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTACCGGAGTGTGGAGGCTGGAAACTTGCTGGGGAGGTCTGGAGAC  650

seq1  CGTTACTGAGGAAGTAGCTGAGGAAGTCTCAAACTGCTGCTGACCCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACTGAGGAAGTAGCTGAGGAAGTCTCAAACTGCTGCTGACCCATTG  700

seq1  TCGTTGCCTTGGGCCAGGTGCCAGGGCAGCTTCTGAGGCCTGGACTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGCCTTGGGCCAGGTGCCAGGGCAGCTTCTGAGGCCTGGACTTGTC  750

seq1  TGGAACTGCCCAGTTCTTGGAAACAGAGATTTAGGCCTAGTCTCTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGCCCAGTTCTTGGAAACAGAGATTTAGGCCTAGTCTCTTTAAA  800

seq1  GGCCAATTTGAAGCCTGCCGTGGAGTGAGCCTTCTCAGCTCTTGCTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTTGAAGCCTGCCGTGGAGTGAGCCTTCTCAGCTCTTGCTATTA  850

seq1  TACCAGTCAGGAAAGGAAAGGGTTAATACATCCTTTTAAACTTGTTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCAGGAAAGGAAAGGGTTAATACATCCTTTTAAACTTGTTATAA  900

seq1  ATAATAGATTGGATGAAATTACTTGAGTTATATATCAATTTACTTGTGAT  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAATAGATTGGATG-AATTACTTGAGTTATATATCAATTTACTTGTGAT  949

seq1  CATCAACACAATAATGTAGATTGAAAATCTTATTAAGAGATTTCACATTC  1000
      |||||||||||| |||||||||| |||||||||| |||||||||||||||
seq2  CATCAACACAAT-ATGTAGATTG-AAATCTTATT-AGAGATTTCACATTC  996

seq1  ATCAGCTGCAAGAAAAATTATTTTTCAAACTTCCAATGGTGGTTTTTTAA  1050
      ||||||||| ||||||  |||||||||||| | |||||||||||||   |
seq2  ATCAGCTGC-AGAAAA--TATTTTTCAAAC-TGCAATGGTGGTTTT---A  1039

seq1  AATATTAAGTACCATCCTATGTGATCTTCCTTAATCTAAAATCTGAAATA  1100
      ||| |  |||| |||||||||||||||||    |||| ||||||||||| 
seq2  AATGT--AGTA-CATCCTATGTGATCTTC---TATCT-AAATCTGAAAT-  1081

seq1  AAGGTACATTTCTTGTTCGTTTCTTCTAGATCAGCGGTTCTCAACCTGTG  1150
      |||||| |||   ||||||  |||||||||   |||| |||| |||||| 
seq2  AAGGTA-ATT--CTGTTCG--TCTTCTAGAATCGCGG-TCTC-ACCTGT-  1123

seq1  GGTTATAACCTCTTTGGGAGTTCAAATGACCCTTTCACAGGGGCTGCCTA  1200
      |||||      || ||||||||| |||||||||    |||  |||     
seq2  GGTTA------CTCTGGGAGTTC-AATGACCCT----CAGCTGCT-----  1157

seq1  AGACCACTGGAAAGCATAGGTATTTATATTACAACCTATAACAGTAGCAA  1250
      ||||||   | ||||||  |||||| |||||                   
seq2  AGACCA--TGCAAGCAT--GTATTT-TATTAA------------------  1184

seq1  AATTACAAGTAGCAACAAAAATAAGTTTATGGTTGGAGGGTCACCTCAAC  1300
                                                        
seq2  --------------------------------------------------  1184

seq1  ATGAGCGACTGTAATAAAAGGTCACAACACTAGGAAGGTTAAGAACCACT  1350
                                                        
seq2  --------------------------------------------------  1184

seq1  GTTTATGATTGATTCAGTAGGATTTGGAATGTTTCTCATCTTTTCCTACC  1400
                                                        
seq2  --------------------------------------------------  1184

seq1  CAGTAATATAATTACAGCCTTGCCAGAAGTATTTAGAAGCCATAGTTTAA  1450
                                                        
seq2  --------------------------------------------------  1184

seq1  CAATATGTATTTTATTAA  1468
                        
seq2  ------------------  1184

seq1: chr19_22407155_22408081
seq2: B6Ng01-167M01.g_68_994 (reverse)

seq1  TAAGAAGTAATTATCCAGACAGCTACCTACCAGCCTTCACTCCTAAT-AA  49
      ||||||| ||||||||||||||||||||||||| ||||||||||||| ||
seq2  TAAGAAG-AATTATCCAGACAGCTACCTACCAG-CTTCACTCCTAATAAA  48

seq1  GGTCCCCTCCCCAGCCT-CTGAGTACACAGACGAAGCCTCTTCCAACACC  98
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTCCCCTCCCCAGCCTCCTGAGTACACAGACGAAGCCTCTTCCAACACC  98

seq1  CCTGTCCTGGCAATGGTACCCAGCCATACAAACCTTGCCCTAGAGACCCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGGCAATGGTACCCAGCCATACAAACCTTGCCCTAGAGACCCT  148

seq1  GGCCACCTCCCCAGAGGCATAAATACTTGCTTTCTCCCCCACACTCCCAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTCCCCAGAGGCATAAATACTTGCTTTCTCCCCCACACTCCCAA  198

seq1  TAAACTGAACCAGTTCTCAGGTGTCCTAGGCTGTGTGTTTTCTGCATGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAACCAGTTCTCAGGTGTCCTAGGCTGTGTGTTTTCTGCATGTT  248

seq1  TCCTGCATGCACCCACTTGCACCTGGCTGTTCTTCCTCCAGTCCAACCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGCACCCACTTGCACCTGGCTGTTCTTCCTCCAGTCCAACCTA  298

seq1  GTACACAATGGACCTGGCTCCCAGGAGGAAGAAGCAGACCCAGATAGCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAATGGACCTGGCTCCCAGGAGGAAGAAGCAGACCCAGATAGCAC  348

seq1  TCATTTTGTTCTCCCTCGTTGCCTCTTTCTGTGCCCCCAGTTCCTTATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTCTCCCTCGTTGCCTCTTTCTGTGCCCCCAGTTCCTTATCT  398

seq1  TTGCTCCCCATGTCAGTAGTTTTACTTACACAGTGTCTTAGTTAGGGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCCATGTCAGTAGTTTTACTTACACAGTGTCTTAGTTAGGGTTT  448

seq1  TACTACTGTGAACAGATACCATGACCAAGGCAAGTCTTATAAAAAACAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTGAACAGATACCATGACCAAGGCAAGTCTTATAAAAAACAAC  498

seq1  ATTTAATTGGTGTTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGGTGTTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCAAGG  548

seq1  TGAGAGCATGGCAGTATCCAGGCAGGCGTGGCTCAGGAGGAGCTGAGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCATGGCAGTATCCAGGCAGGCGTGGCTCAGGAGGAGCTGAGAGT  598

seq1  TCTATGTCTTCATCCAAAGGCTGCTAGTGGAAGACTTACTTCCAGGCAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCTTCATCCAAAGGCTGCTAGTGGAAGACTTACTTCCAGGCAAC  648

seq1  TAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCCAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTCCAACC  698

seq1  AGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTGCCACTCCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTGCCACTCCCT  748

seq1  GGTCCAAGGATATACAAACCATCACACACAGTCTCCTCTCCATTGGTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGGATATACAAACCATCACACACAGTCTCCTCTCCATTGGTTTC  798

seq1  TGGTTCTTACCTTTCTAATCCGCTAGCTTCTTCTCTTGCTTCATATTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTACCTTTCTAATCCGCTAGCTTCTTCTCTTGCTTCATATTAAA  848

seq1  GCTTAAATATCATGTCCCTTAAAAGGGTCCCTACTATGGTCTCATTTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATATCATGTCCCTTAAAAGGGTCCCTACTATGGTCTCATTTCCT  898

seq1  TTTCAGAGCATTCTCAAGAGTGGGAATTC  927
      |||||||||||||||||||||||||||||
seq2  TTTCAGAGCATTCTCAAGAGTGGGAATTC  927