BAC Information

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BAC

Clone NameB6Ng01-168H07
Chromosome19 (Build37)
Map Location 17,684,356 - 17,782,219
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168H07.bB6Ng01-168H07.g
ACCDH959689DH959690
length7471,171
definitionDH959689|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H07, 5' end.DH959690|Mus musculus domesticus DNA, BAC clone: B6Ng01-168H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,781,473 - 17,782,219)(17,684,356 - 17,685,542)
sequence
gaattcatagggaaccaatggctcaagccatagaaaatataacccaaaat
gtatgcgaaccagatcttgaacttacatgattatgattggtaccaaagct
ttgaagtgaaggcagtacaaagctatgtagtccctttttctcaccactct
ttcagtgcccaaatggtgacatgttgaatctgtgttattgatgataagga
aataccatcataagtagagtctagaaccgcctgtcttctgctcccaattt
gcctcagttcattgtggcttgcattgctgtggacttaaaacagaatgcct
ccttacaaatgaaacagtctcacagtcccctggcatttcatccctctact
cccatttcagtaaatgaattattgatgactgagttagagcaacccttccc
taggttgcctcctgttagatattctccctgcttaagccatggcagtgcgt
gtgtgacagaagatgataccattgtatcatattggatgtgctgtgtgtgg
cttcagaatctaattgctctgcaaaagaaaccaccctagaagttaaggtt
cattttcttaaatgaatagagttggtttttctttttttcattttcttttt
tatctctcatttttgggacttaaccaaagaagatagaaatatatttcctt
tgattctttaatctttcacacatttcctgtggtttttaagaatgttagta
tgatacagaaaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccatcgctctctgacttcaacccttggaatccttatggtggaaag
aatcaacctcctcaagctgtcctcttacctctacacatgtgttgtgcaat
gtgcatgtccatgtgctttggtacctacacacacaaatctaataaaaaag
gagcaaggctcacatgggaaggtgacaacaaggacaacaagacacaggcc
attcactggtctaaaaacataggtccatccatatcagtttcgacatgccc
aatttttaaaatccaaagacagcagaataccaatgaaatatattgtggta
gaataataagcaacatatagatgataaataatcttacttaagtatgtcct
ctgagggaagaactgtaccaaattctcctctacccttcgtctcaaagaca
gagtatttttataaactgcctgaccacagctcctgatcttctagcttctg
tctccatggagtgtgctcccaggcctcagtgctaagttctttaaatccca
cctcttctcttgttatgtcccttccttgctttgtagacaagtcttgtcca
ggttactcgcctcacctgttaatggccttgttaatcttcaagaccacacc
acctccagtgacagagggtagacagaagcacagtttcttgttttgaataa
ctccaataggaagaggcttattgaatttcaaaatagtctctcagtgacat
gtgtgaatgtattctgataggattgcatcttgactgaaattcttgccatt
ttatttttgaactggattcagaatcagtggttcaggaaacccatttcatt
attttctagccctcagacattttagaccaaagtaggcctctcctgatgac
tcttaaatcttgaggatcagagctttatggctttttattttagcttgaga
tatcagaatcactgtgaaatatcaccatctcccactcttaaggagagtca
aacacctctgctgagagaagagttaaaaggaccagggtatcagtcatcct
ctcttggagtagtaattagtttcttcaggattatagagatgtcaactctc
tcttaagcatatagctcgccaccctgcaaaaactagttttctgctacact
ttatgtgcccattgataggctagagtcagtagattctttcagattctatc
agaccttataggctgccaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17781473_17782219
seq2: B6Ng01-168H07.b_47_793 (reverse)

seq1  CACACACACACACACACACACACACACACACACTGGTTTCTGTATCATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACTGGTTTCTGTATCATAC  50

seq1  TAACATTCTTAAAAACCACAGGAAATGTGTGAAAGATTAAAGAATCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTTAAAAACCACAGGAAATGTGTGAAAGATTAAAGAATCAAAG  100

seq1  GAAATATATTTCTATCTTCTTTGGTTAAGTCCCAAAAATGAGAGATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATTTCTATCTTCTTTGGTTAAGTCCCAAAAATGAGAGATAAAA  150

seq1  AAGAAAATGAAAAAAAGAAAAACCAACTCTATTCATTTAAGAAAATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGAAAAAAAGAAAAACCAACTCTATTCATTTAAGAAAATGAAC  200

seq1  CTTAACTTCTAGGGTGGTTTCTTTTGCAGAGCAATTAGATTCTGAAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTCTAGGGTGGTTTCTTTTGCAGAGCAATTAGATTCTGAAGCCA  250

seq1  CACACAGCACATCCAATATGATACAATGGTATCATCTTCTGTCACACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCACATCCAATATGATACAATGGTATCATCTTCTGTCACACACG  300

seq1  CACTGCCATGGCTTAAGCAGGGAGAATATCTAACAGGAGGCAACCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCATGGCTTAAGCAGGGAGAATATCTAACAGGAGGCAACCTAGGG  350

seq1  AAGGGTTGCTCTAACTCAGTCATCAATAATTCATTTACTGAAATGGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGCTCTAACTCAGTCATCAATAATTCATTTACTGAAATGGGAGT  400

seq1  AGAGGGATGAAATGCCAGGGGACTGTGAGACTGTTTCATTTGTAAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATGAAATGCCAGGGGACTGTGAGACTGTTTCATTTGTAAGGAGG  450

seq1  CATTCTGTTTTAAGTCCACAGCAATGCAAGCCACAATGAACTGAGGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTTTTAAGTCCACAGCAATGCAAGCCACAATGAACTGAGGCAAA  500

seq1  TTGGGAGCAGAAGACAGGCGGTTCTAGACTCTACTTATGATGGTATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCAGAAGACAGGCGGTTCTAGACTCTACTTATGATGGTATTTCC  550

seq1  TTATCATCAATAACACAGATTCAACATGTCACCATTTGGGCACTGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCAATAACACAGATTCAACATGTCACCATTTGGGCACTGAAAGA  600

seq1  GTGGTGAGAAAAAGGGACTACATAGCTTTGTACTGCCTTCACTTCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGAAAAAGGGACTACATAGCTTTGTACTGCCTTCACTTCAAAGC  650

seq1  TTTGGTACCAATCATAATCATGTAAGTTCAAGATCTGGTTCGCATACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACCAATCATAATCATGTAAGTTCAAGATCTGGTTCGCATACATT  700

seq1  TTGGGTTATATTTTCTATGGCTTGAGCCATTGGTTCCCTATGAATTC  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTATATTTTCTATGGCTTGAGCCATTGGTTCCCTATGAATTC  747

seq1: chr19_17684356_17685542
seq2: B6Ng01-168H07.g_68_1238

seq1  GAATTCCATCGCTCTCTGACTTCAACCCTTGGAATCCTTATGGTGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGCTCTCTGACTTCAACCCTTGGAATCCTTATGGTGGAAAG  50

seq1  AATCAACCTCCTCAAGCTGTCCTCTTACCTCTACACATGTGTTGTGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCTCCTCAAGCTGTCCTCTTACCTCTACACATGTGTTGTGCAAT  100

seq1  GTGCATGTCCATGTGCTTTGGTACCTACACACACAAATCTAATAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTCCATGTGCTTTGGTACCTACACACACAAATCTAATAAAAAAG  150

seq1  GAGCAAGGCTCACATGGGAAGGTGACAACAAGGACAACAAGACACAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGCTCACATGGGAAGGTGACAACAAGGACAACAAGACACAGGCC  200

seq1  ATTCACTGGTCTAAAAACATAGGTCCATCCATATCAGTTTCGACATGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGGTCTAAAAACATAGGTCCATCCATATCAGTTTCGACATGCCC  250

seq1  AATTTTTAAAATCCAAAGACAGCAGAATACCAATGAAATATATTGTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAATCCAAAGACAGCAGAATACCAATGAAATATATTGTGGTA  300

seq1  GAATAATAAGCAACATATAGATGATAAATAATCTTACTTAAGTATGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAAGCAACATATAGATGATAAATAATCTTACTTAAGTATGTCCT  350

seq1  CTGAGGGAAGAACTGTACCAAATTCTCCTCTACCCTTCGTCTCAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAGAACTGTACCAAATTCTCCTCTACCCTTCGTCTCAAAGACA  400

seq1  GAGTATTTTTATAAACTGCCTGACCACAGCTCCTGATCTTCTAGCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTTATAAACTGCCTGACCACAGCTCCTGATCTTCTAGCTTCTG  450

seq1  TCTCCATGGAGTGTGCTCCCAGGCCTCAGTGCTAAGTTCTTTAAATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATGGAGTGTGCTCCCAGGCCTCAGTGCTAAGTTCTTTAAATCCCA  500

seq1  CCTCTTCTCTTGTTATGTCCCTTCCTTGCTTTGTAGACAAGTCTTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTCTTGTTATGTCCCTTCCTTGCTTTGTAGACAAGTCTTGTCCA  550

seq1  GGTTACTCGCCTCACCTGTTAATGGCCTTGTTAATCTTCAAGACCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTCGCCTCACCTGTTAATGGCCTTGTTAATCTTCAAGACCACACC  600

seq1  ACCTCCAGTGACAGAGGGTAGACAGAAGCACAGTTTCTTGTTTTGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTGACAGAGGGTAGACAGAAGCACAGTTTCTTGTTTTGAATAA  650

seq1  CTCCAATAGGAAGAGGCTTATTGAATTTCAAAATAGTCTCTCAGTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATAGGAAGAGGCTTATTGAATTTCAAAATAGTCTCTCAGTGACAT  700

seq1  GTGTGAATGTATTCTGATAGGATTGCATCTTGACTGAAATTCTTGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATGTATTCTGATAGGATTGCATCTTGACTGAAATTCTTGCCATT  750

seq1  TTATTTTTGAACTGGATTCAGAATCAGTGGTTCAGGAAACCCATTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGAACTGGATTCAGAATCAGTGGTTCAGGAAACCCATTTCATT  800

seq1  ATTTTCTAGCCCTCAGACATTTTAGACCAAAGTAGGCCTCTCCTGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGCCCTCAGACATTTTAGACCAAAGTAGGCCTCTCCTGATGAC  850

seq1  TCTTAAATCTTGAGGATCAGAGCTTTATGGC-TTTTATTTTAGCTTGAGA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTTAAATCTTGAGGATCAGAGCTTTATGGCTTTTTATTTTAGCTTGAGA  900

seq1  TATCAGAATCACTGTGAAATATCACCATCTCCCACTCTTAAGGAGAGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAATCACTGTGAAATATCACCATCTCCCACTCTTAAGGAGAGTCA  950

seq1  AACACCTCTGCTGAGAGAAGAGTTAAAAGGGACCAGGGTTATCAGTTCAT  999
      |||||||||||||||||||||||||||| ||||||||| |||||| ||||
seq2  AACACCTCTGCTGAGAGAAGAGTTAAAA-GGACCAGGG-TATCAG-TCAT  997

seq1  CCTCTCTTGAAGTAGTAATTTAGTTTCTTCAGGGAATTATAGAGATGTCA  1049
      ||||||||| |||||||| ||||||||||||||  |||||||||||||||
seq2  CCTCTCTTGGAGTAGTAA-TTAGTTTCTTCAGG--ATTATAGAGATGTCA  1044

seq1  ACTCTCTCTTAAGCATATAAGCTTCGCACACTGCAAAAACTAGTTTTCTG  1099
      |||||||||||||||||| ||||   ||| ||||||||||||||||||||
seq2  ACTCTCTCTTAAGCATAT-AGCTCGCCACCCTGCAAAAACTAGTTTTCTG  1093

seq1  CTTACAACTTTATGTGGCACATTGATA-GCTAAAGAGTCAGTAAGAGTTT  1148
      | ||| ||||||||| || |||||||| |||  ||||||||| |||   |
seq2  C-TAC-ACTTTATGT-GCCCATTGATAGGCT--AGAGTCAGT-AGA---T  1134

seq1  TCTTTTCAGATACTTATCAGCACCTATATA-GCTG-CAACA  1187
      || |||||||| | |||||| |||| |||| |||| |||||
seq2  TC-TTTCAGATTC-TATCAG-ACCT-TATAGGCTGCCAACA  1171