BAC Information

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BAC

Clone NameB6Ng01-169E03
Chromosome19 (Build37)
Map Location 6,918,171 - 7,020,378
singlet/doubletdoublet
Overlap geneCcdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad
Upstream geneCdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4
Downstream genePlcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169E03.bB6Ng01-169E03.g
ACCDH960285DH960286
length1,1321,046
definitionDH960285|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E03, 5' end.DH960286|Mus musculus domesticus DNA, BAC clone: B6Ng01-169E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,918,171 - 6,919,207)(7,019,308 - 7,020,378)
sequence
gaattccaaaagtcacataacacagtctcaggaactctctgccccatatc
ccacacctgggattaaaactaaaatacattcacataatatttctgtggtt
ttcaaagaaaccaaaattccagagttgtcccagcaggaactggagtggag
accatggagtggagaccgtggagggatgctgcttgttcccttgcttcctc
tgccgtgctcggctgcctttccttccttccttccttcctttctttctttc
tttctttctttctttctttctttctttcaagatttttattatttttaact
ggtgatcatggaagccagaggcattccctagagctggagttacagaaagc
tgtgagcttcccaatgtgggccttgcagaagagcagtgagtgctctcaac
tattgagccatgcctccagggtctctcctagcttttttatacagcccagg
atcacctgcctagggacatagcatcacagtggactgagccatcctacatc
aatcaagagaatgcctccgtagacactcccgtatgccaatcagatggtga
caatttctctgttagctttcctcttcccaggtgtcaaattgacaactaaa
gctgtatcagttcccttttgtcatcctggtgacccagctcagagatgtgc
cataccacctcttatagaaaccagactgtgagctccctgaggagctgacc
aggggtttccagttccttggttcctccaaagcggttgggtgggggaagat
gaggaggttggaaaacatggagagagaaaagtgccctgagaggcaggtca
ggccaactaagttcactgttctcatatcccagaccccaggtctcatccgc
tgttaaatgcctacccaggccctgcccccattggctggtacctggcgggc
tcatgcacgttttcacaaggccaatggccacactatgattccttttgctt
gctgatccaggctggctccctgacttactgaaagcccacagcaatagacg
tcccacgcactcccatctccctctagcaaccagctaacaagaaaccagaa
atcagggtttcaacttattcttctttcctcgggtccagacaagctcgaat
acagcccaggctgtccccagggatagggcctt
gaattccatcaccacctgccacacacacacacacaccccacacactggcc
cagggagtgtctgtctctgcctagcatgggatgggagggaagcaaagagg
acacacgttcagctaccttccctccccatggctgtttgccctggtcgtct
tcattcacagcagctctccttcatggagctggggtacacctctgctcctc
ccagcagcaggccctgcttctactgcgctccctaaagctgtttgcaaagc
tgtcagtgtccctcccccacttcaaacctcaggcttgcccttcctcctat
gagtgtccccacctttccttccagtctctcatcccagaccctgtcacttt
gtcctagcatgatgccagccaattgtcacctccttcctgttgaagcaccg
agtagatgtaatactcaaggcagctcctcttttgggggctagaccagcac
acccctcaaccacaagacagaagccaggttcctcagttccatgttgctgg
gacagctctaaagagggggcttctagcctggggttgtctggacaaggccg
ggcccttcactctgcagactggagtactgtgacgaagcagtgcgggaccc
cagccaggccccacctgtggacgtgcaccagccgcctgccttcctccaca
agctgctgcagctaagtggggtctgcctatactttgaggagctgccctcc
caggcagacccaccacagccacctctgcagatcgcagctgcacgtggagc
tcatggtgaggctgaagcagaacaaggccttcccaggccccaaggtgagt
cccagccatggggaacttgatccgtggggctggaaagacagctcagggtt
cagagcactggctgttctttcagaggtcctgagttcatttccagcaacca
catggtggctcacaccctgtataatgaatctgatgccctcttctggtgtg
tctgagacagccacatgtctcacattagtaaacagttattattactatat
actttttaaaaaggaagaaaagaatctgagatatgccagcatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6918171_6919207
seq2: B6Ng01-169E03.b_152_1177

seq1  GAAACCAAAATTCCAGAGTTGTCCCAGCAGGAACTGGAGTGGAGACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAAATTCCAGAGTTGTCCCAGCAGGAACTGGAGTGGAGACCATG  50

seq1  GAGTGGAGACCGTGGAGGGATGCTGCTTGTTCCCTTGCTTCCTCTGCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGACCGTGGAGGGATGCTGCTTGTTCCCTTGCTTCCTCTGCCGT  100

seq1  GCTCGGCTGCCTTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGCTGCCTTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTT  150

seq1  TCTTTCTTTCTTTCTTTCTTTCAAGATTTTTATTATTTTTAACTGGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCAAGATTTTTATTATTTTTAACTGGTGAT  200

seq1  CATGGAAGCCAGAGGCATTCCCTAGAGCTGGAGTTACAGAAAGCTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGCCAGAGGCATTCCCTAGAGCTGGAGTTACAGAAAGCTGTGAG  250

seq1  CTTCCCAATGTGGGCCTTGCAGAAGAGCAGTGAGTGCTCTCAACTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATGTGGGCCTTGCAGAAGAGCAGTGAGTGCTCTCAACTATTGA  300

seq1  GCCATGCCTCCAGGGTCTCTCCTAGCTTTTTTATACAGCCCAGGATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCTCCAGGGTCTCTCCTAGCTTTTTTATACAGCCCAGGATCACC  350

seq1  TGCCTAGGGACATAGCATCACAGTGGACTGAGCCATCCTACATCAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGGACATAGCATCACAGTGGACTGAGCCATCCTACATCAATCAA  400

seq1  GAGAATGCCTCCGTAGACACTCCCGTATGCCAATCAGATGGTGACAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGCCTCCGTAGACACTCCCGTATGCCAATCAGATGGTGACAATTT  450

seq1  CTCTGTTAGCTTTCCTCTTCCCAGGTGTCAAATTGACAACTAAAGCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTAGCTTTCCTCTTCCCAGGTGTCAAATTGACAACTAAAGCTGTA  500

seq1  TCAGTTCCCTTTTGTCATCCTGGTGACCCAGCTCAGAGATGTGCCATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCTTTTGTCATCCTGGTGACCCAGCTCAGAGATGTGCCATACC  550

seq1  ACCTCTTATAGAAACCAGACTGTGAGCTCCCTGAGGAGCTGACCAGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTATAGAAACCAGACTGTGAGCTCCCTGAGGAGCTGACCAGGGGT  600

seq1  TTCCAGTTCCTTGGTTCCTCCAAAGCGGTTGGGTGGGGGAAGATGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCCTTGGTTCCTCCAAAGCGGTTGGGTGGGGGAAGATGAGGAG  650

seq1  GTTGGAAAACATGGAGAGAGAAAAGTGCCCTGAGAGGCAGGGTCAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTGGAAAACATGGAGAGAGAAAAGTGCCCTGAGAGGCA-GGTCAGGCCA  699

seq1  ACTAAGTTCACTGTTCTCATATCCCAGACCCCAGGTCTCATCCGCTGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTCACTGTTCTCATATCCCAGACCCCAGGTCTCATCCGCTGTTA  749

seq1  AATGCCTACCCAGGCCCTGCCCCCATTGGCTGGTTACCTGGCGGGCTCAT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGCCTACCCAGGCCCTGCCCCCATTGGCTGG-TACCTGGCGGGCTCAT  798

seq1  GCAGGTTTTCACAAGGCCAAATGGCCACACTATGATTCCTTTTGCTGCCT  850
      ||| |||||||||||||| |||||||||||||||||||||||||||  ||
seq2  GCACGTTTTCACAAGGCC-AATGGCCACACTATGATTCCTTTTGCTTGCT  847

seq1  GATCCAGGCATGGCTCCCTGAC-TACAG-AAGCCCACAGCAATAGACGTC  898
      ||||||||| |||||||||||| ||| | |||||||||||||||||||||
seq2  GATCCAGGC-TGGCTCCCTGACTTACTGAAAGCCCACAGCAATAGACGTC  896

seq1  CCCAGCACCTCCAGTCTCCCACAAGCAGCCAGCAGACACAGAACCCAG-A  947
      ||  ||| ||||  |||||| | |||| |||||  ||| |||| |||| |
seq2  CCACGCA-CTCCCATCTCCCTCTAGCAACCAGCTAACA-AGAAACCAGAA  944

seq1  TTCAAGGGGTTTCAGCTTTATTCTTCTTTCCCTCGTGTCCCAGACAATGC  997
       |||  |||||||| | |||||||||||| ||||| || |||||||| ||
seq2  ATCA--GGGTTTCAAC-TTATTCTTCTTT-CCTCGGGT-CCAGACAA-GC  988

seq1  TCAGATATCAGCCCAGGCCTGTCCCCAGGGAATGGGCCTT  1037
      ||  ||| ||||||||| |||||||||||||  |||||||
seq2  TCGAATA-CAGCCCAGG-CTGTCCCCAGGGATAGGGCCTT  1026

seq1: chr19_7019308_7020378
seq2: B6Ng01-169E03.g_67_1112 (reverse)

seq1  CACCACTGCTGGGCATATCTCCAGATTTCTTTTTCTTTCCTTTTTTAAAA  50
      ||||| |||| ||||||||| |||| |||||||   |||||||||  |||
seq2  CACCA-TGCT-GGCATATCT-CAGA-TTCTTTT--CTTCCTTTTT--AAA  42

seq1  AAGTTAATTAATTAGTTAATTAATTAACTTGTTTACTTAATGTGAGAACA  100
      |||     ||  ||| ||||  | |||| ||||||| ||||||||| |||
seq2  AAG-----TATATAG-TAAT--AATAAC-TGTTTAC-TAATGTGAG-ACA  81

seq1  TTGTGGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTCCATTATAC  150
       |||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  -TGTGGCTGTC-TCAGACACACCAGAAGAGGGCATCAGATT-CATTATAC  128

seq1  AGGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTG  200
      |||| |||||||||||||||||||||| |||| |||||||||||||||||
seq2  AGGG-TGTGAGCCACCATGTGGTTGCT-GGAAATGAACTCAGGACCTCTG  176

seq1  AAAGAACAGCCAGTGCTCTGAACCCCTGAGCTGTCTTTCCAGCCCCACGG  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGAACAGCCAGTGCTCTGAA-CCCTGAGCTGTCTTTCCAGCCCCACGG  225

seq1  ATCAAGTTCCCCATGGCTGGGACTCACCTTGGGGCCTGGGAAGGCCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTCCCCATGGCTGGGACTCACCTTGGGGCCTGGGAAGGCCTTGT  275

seq1  TCTGCTTCAGCCTCACCATGAGCTCCACGTGCAGCTGCGATCTGCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCAGCCTCACCATGAGCTCCACGTGCAGCTGCGATCTGCAGAGG  325

seq1  TGGCTGTGGTGGGTCTGCCTGGGAGGGCAGCTCCTCAAAGTATAGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGTGGGTCTGCCTGGGAGGGCAGCTCCTCAAAGTATAGGCAGA  375

seq1  CCCCACTTAGCTGCAGCAGCTTGTGGAGGAAGGCAGGCGGCTGGTGCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTAGCTGCAGCAGCTTGTGGAGGAAGGCAGGCGGCTGGTGCACG  425

seq1  TCCACAGGTGGGGCCTGGCTGGGGTCCCGCACTGCTTCGTCACAGTACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGTGGGGCCTGGCTGGGGTCCCGCACTGCTTCGTCACAGTACTC  475

seq1  CAGTCTGCAGAGTGAAGGGCCCGGCCTTGTCCAGACAACCCCAGGCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCAGAGTGAAGGGCCCGGCCTTGTCCAGACAACCCCAGGCTAGA  525

seq1  AGCCCCCTCTTTAGAGCTGTCCCAGCAACATGGAACTGAGGAACCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCTTTAGAGCTGTCCCAGCAACATGGAACTGAGGAACCTGGCT  575

seq1  TCTGTCTTGTGGTTGAGGGGTGTGCTGGTCTAGCCCCCAAAAGAGGAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGTGGTTGAGGGGTGTGCTGGTCTAGCCCCCAAAAGAGGAGCT  625

seq1  GCCTTGAGTATTACATCTACTCGGTGCTTCAACAGGAAGGAGGTGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAGTATTACATCTACTCGGTGCTTCAACAGGAAGGAGGTGACAAT  675

seq1  TGGCTGGCATCATGCTAGGACAAAGTGACAGGGTCTGGGATGAGAGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCATCATGCTAGGACAAAGTGACAGGGTCTGGGATGAGAGACTG  725

seq1  GAAGGAAAGGTGGGGACACTCATAGGAGGAAGGGCAAGCCTGAGGTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGGTGGGGACACTCATAGGAGGAAGGGCAAGCCTGAGGTTTGA  775

seq1  AGTGGGGGAGGGACACTGACAGCTTTGCAAACAGCTTTAGGGAGCGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGAGGGACACTGACAGCTTTGCAAACAGCTTTAGGGAGCGCAGT  825

seq1  AGAAGCAGGGCCTGCTGCTGGGAGGAGCAGAGGTGTACCCCAGCTCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGGCCTGCTGCTGGGAGGAGCAGAGGTGTACCCCAGCTCCATG  875

seq1  AAGGAGAGCTGCTGTGAATGAAGACGACCAGGGCAAACAGCCATGGGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGCTGCTGTGAATGAAGACGACCAGGGCAAACAGCCATGGGGAG  925

seq1  GGAAGGTAGCTGAACGTGTGTCCTCTTTGCTTCCCTCCCATCCCATGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAGCTGAACGTGTGTCCTCTTTGCTTCCCTCCCATCCCATGCTA  975

seq1  GGCAGAGACAGACACTCCCTGGGCCAGTGTGTGGGGTGTGTGTGTGTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGACAGACACTCCCTGGGCCAGTGTGTGGGGTGTGTGTGTGTGTG  1025

seq1  TGGCAGGTGGTGATGGAATTC  1071
      |||||||||||||||||||||
seq2  TGGCAGGTGGTGATGGAATTC  1046