BAC Information

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BAC

Clone NameB6Ng01-169K13
Chromosome19 (Build37)
Map Location 43,227,101 - 43,227,925
singlet/doubletsinglet
Overlap geneLOC545291
Upstream geneEG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K13.bB6Ng01-169K13.g
ACCDH960578DH960579
length9371,137
definitionDH960578|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K13, 5' end.DH960579|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctgg
tattacactatcactttgaataaaagctaagtcactgccctacacaggaa
tttaccatcttctaggaagaaggaagtctgagacctaaagaggaaccaga
atagatacttaaaactatagatagctgagttacacccatacacatgtatt
tacaatggcctaagggaaaggtggactatacaatagactaaaataggaac
tatggcaagggcacgaagccctggaccctggcttctaagattaagtgaat
cttaggtggagctctttttgatcccagttgttaacaatgaattctatccc
aggtggttcctgttagacctgtgtttgtattcctctgttttgtgtaagaa
tccagtaatctctttgtaccttgctggtgtgtcacccaacttccttattt
tcttctgtataaaaagtttgatgctcgatttgacaaattaccttcagatt
ctacacaacctctcctgtgtgatttgtctgtcattccatccaatgctttg
cccacctgtgactagagacccattccatgtagacaaaggggcccagaggg
tctgcggcaaataaagaaggaatctattctgcgagtgaaatgttcgcaga
cagccagtggacagaactgcagttagttccagagcactagaacagaaggc
aaggagggaaagacatggaatagaggagataaagttagcaagatggataa
aagtaagattataaatgcttcagtttttaccttttctgagatatttggtg
attaaaatatatatatatattgaggttaaaagaacattttcccctttcct
cccaacaaactctttcatgtaccaccttttgctctcttttctttaattat
tgttttatatgtgtgtctgtgggtgtgtgtgtgtgtg
gaattctaaccccttgcctgggatgaagctggtgaacctttttccgttct
gtgtctgagcatcttgctgttagtttccttgcttcaatttcatgtagtcc
tgtcttttgacattgggagcaagtccctgtgaagttgaagttctgttcag
aaagttgttgcctaccctaagttttaacaagtgttttctgttttcagctt
tttgaatttttaaattaaggtctttgatccatttcaaaatggatttctga
acaaggtcaaagaatgaaaagaaatctcattcttctgcaaatggatattc
agttttgacagcaccatttgttgagtaggcctttttcccaatggtttagc
taccttagtaaaaatataacttggtaggcctatctctgttttgtttctca
gttctgttctgttctgttctgttctgttctgttctgttctgttctgttct
gttctgttctgttctgttctgttctattctattctatccatttgtctgtt
tttatgctggtaccaggccatgtttatcactataattttgtagtataatt
tgaggttgggtattgtactttctctagctgtgttttgttcttcatgaatg
ctttggctagttatggtttttgtggttccatataaagtcttagattgttt
gttctaggcatgtgtaatatgatatcatgattttaataggtattacatta
aacctcgagatctattttggtagtatggctattttcacaacatacatttt
gccaatcccggcccatgaaagatctttccaccatctactgtcttttattt
ccctttagattgtcttgacgtttgcaccgtagagttctttttctttttag
ctagttgtattcataggtggttaatgattttcagtatatggatgaaatat
tttccctaattctttctctcagaatacattgttggtatgtatgaagactg
ctgtgtttttatatccattttctaatctgagctttattttaactggatct
aagatttctagccaactttatagccctctttattagagggaatcatgtca
tttgcgaatcaaaggtggactcttcttattttacactttaaatcttcttt
gtgccactgctttttagaactggaaaattgctagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43227101_43227925
seq2: B6Ng01-169K13.b_161_984

seq1  AGGAAGAAGGAAGTCTGAGACCTAAAGAGGAACCAGAATAGATACTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGGAAGTCTGAGACCTAAAGAGGAACCAGAATAGATACTTAAA  50

seq1  ACTATAGATAGCTGAGTTACACCCATACACATGTATTTACAATGGCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGATAGCTGAGTTACACCCATACACATGTATTTACAATGGCCTAA  100

seq1  GGGAAAGGTGGACTATACAATAGACTAAAATAGGAACTATGGCAAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTGGACTATACAATAGACTAAAATAGGAACTATGGCAAGGGCA  150

seq1  CGAAGCCCTGGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCCTGGACCCTGGCTTCTAAGATTAAGTGAATCTTAGGTGGAGCT  200

seq1  CTTTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGATCCCAGTTGTTAACAATGAATTCTATCCCAGGTGGTTCCTGT  250

seq1  TAGACCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGTGTTTGTATTCCTCTGTTTTGTGTAAGAATCCAGTAATCTCT  300

seq1  TTGTACCTTGCTGGTGTGTCACCCAACTTCCTTATTTTCTTCTGTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTGCTGGTGTGTCACCCAACTTCCTTATTTTCTTCTGTATAAA  350

seq1  AAGTTTGATGCTCGATTTGACAAATTACCTTCAGATTCTACACAACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGATGCTCGATTTGACAAATTACCTTCAGATTCTACACAACCTCT  400

seq1  CCTGTGTGATTTGTCTGTCATTCCATCCAATGCTTTGCCCACCTGTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGATTTGTCTGTCATTCCATCCAATGCTTTGCCCACCTGTGACT  450

seq1  AGAGACCCATTCCATGTAGACAAAGGGGCCCAGAGGGTCTGCGGCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCCATTCCATGTAGACAAAGGGGCCCAGAGGGTCTGCGGCAAATA  500

seq1  AAGAAGGAATCTATTCTGCGAGTGAAATGTTCGCAGACAGCCAGTGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAATCTATTCTGCGAGTGAAATGTTCGCAGACAGCCAGTGGACA  550

seq1  GAACTGCAGTTAGTTCCAGAGCACTAGAACAGAAGGCAAGGAGGGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCAGTTAGTTCCAGAGCACTAGAACAGAAGGCAAGGAGGGAAAGA  600

seq1  CATGGAATAGAGGAGATAAAGTTAGCAAGATGGATAAAAGTAAGATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATAGAGGAGATAAAGTTAGCAAGATGGATAAAAGTAAGATTATA  650

seq1  AATGCTTCAGTTTTTACCTTTTCTGAGATATTTGGTGATTAAAATATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCAGTTTTTACCTTTTCTGAGATATTTGGTGATTAAAATATATA  700

seq1  TATATATTGAGGTTAAAAGAACATTTTCCCCTTTCCTCCCAACAAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGAGGTTAAAAGAACATTTTCCCCTTTCCTCCCAACAAACTCT  750

seq1  TTCATGTACCACCTTTTGCTCTCTTTTTCTTTAATTATTGTTTTATATGT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCATGTACCACCTTTTGCTCTC-TTTTCTTTAATTATTGTTTTATATGT  799

seq1  GTGTCTGTGGGTGTGTGTGTGTGTG  825
      |||||||||||||||||||||||||
seq2  GTGTCTGTGGGTGTGTGTGTGTGTG  824